Wall clock time and date at job start Mon Mar 30 2020 04:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99735 * 2 1 4 4 C 1.53002 * 109.46911 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47053 * 65.00374 * 4 3 2 6 6 C 1.46895 * 110.99789 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47030 * 179.97438 * 6 5 4 8 8 C 1.39866 * 126.04243 * 269.69664 * 7 6 5 9 9 N 1.30835 * 108.20239 * 179.81568 * 8 7 6 10 10 N 1.40079 * 108.20792 * 0.43604 * 9 8 7 11 11 C 1.46498 * 126.04110 * 179.74150 * 10 9 8 12 12 H 1.09010 * 109.46899 * 334.97231 * 11 10 9 13 13 C 1.53002 * 109.47171 * 214.97737 * 11 10 9 14 14 C 1.53001 * 109.47245 * 94.96990 * 11 10 9 15 15 C 1.50699 * 109.46935 * 184.99896 * 14 11 10 16 16 H 1.07999 * 120.00548 * 0.02562 * 15 14 11 17 17 C 1.37882 * 119.99758 * 180.02562 * 15 14 11 18 18 N 1.31517 * 120.00082 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00025 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46878 * 90.00310 * 19 17 15 21 21 H 1.48499 * 109.47370 * 210.00186 * 19 17 15 22 22 H 1.48501 * 109.47295 * 330.00337 * 19 17 15 23 23 C 1.34947 * 107.92440 * 359.71701 * 10 9 8 24 24 H 1.09007 * 109.46652 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46730 * 299.99656 * 1 2 3 26 26 H 1.08996 * 109.47304 * 60.00237 * 1 2 3 27 27 H 1.09003 * 109.46726 * 60.00388 * 3 2 1 28 28 H 1.09002 * 109.47214 * 300.00341 * 3 2 1 29 29 H 1.08992 * 109.47056 * 305.00044 * 4 3 2 30 30 H 1.09004 * 109.47006 * 185.00161 * 4 3 2 31 31 H 1.00899 * 110.99484 * 303.95475 * 5 4 3 32 32 H 1.08996 * 109.47424 * 299.99656 * 6 5 4 33 33 H 1.09002 * 109.47411 * 60.00282 * 6 5 4 34 34 H 1.08006 * 125.89526 * 359.97438 * 8 7 6 35 35 H 1.08995 * 109.47157 * 60.00106 * 13 11 10 36 36 H 1.09004 * 109.46701 * 180.02562 * 13 11 10 37 37 H 1.09002 * 109.46847 * 299.99206 * 13 11 10 38 38 H 1.09000 * 109.47206 * 305.00774 * 14 11 10 39 39 H 1.09002 * 109.46527 * 65.00693 * 14 11 10 40 40 H 0.96991 * 120.00178 * 179.97438 * 18 17 15 41 41 H 1.08002 * 126.13136 * 179.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5624 -1.2544 6 6 5.4405 0.4305 -1.2895 7 6 5.8560 -0.2109 -2.5884 8 6 6.0080 -1.5823 -2.8174 9 7 6.3740 -1.7507 -4.0621 10 7 6.4764 -0.4894 -4.6627 11 6 6.8649 -0.2243 -6.0502 12 1 7.4737 -1.0491 -6.4209 13 6 7.6717 1.0741 -6.1147 14 6 5.6096 -0.0884 -6.9143 15 6 6.0087 0.0616 -8.3597 16 1 7.0531 0.0598 -8.6347 17 6 5.0403 0.2012 -9.3313 18 7 3.7685 0.2040 -8.9965 19 14 5.5348 0.3865 -11.1231 20 1 5.6218 -0.9551 -11.7538 21 1 4.5193 1.2033 -11.8350 22 1 6.8565 1.0586 -11.2049 23 6 6.1534 0.4385 -3.7377 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6885 1.8464 0.8901 28 1 1.6885 1.8465 -0.8900 29 1 3.8507 0.5686 0.8426 30 1 3.9784 2.1767 0.0902 31 1 3.5304 -0.3314 -1.3921 32 1 5.8963 1.4173 -1.2091 33 1 5.7694 -0.1907 -0.4564 34 1 5.8481 -2.3669 -2.0925 35 1 8.5660 0.9772 -5.4992 36 1 7.9604 1.2715 -7.1471 37 1 7.0630 1.8988 -5.7441 38 1 4.9908 -0.9782 -6.7986 39 1 5.0457 0.7898 -6.6000 40 1 3.0873 0.3025 -9.6799 41 1 6.1358 1.5080 -3.8876 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693478244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:38 Heat of formation + Delta-G solvation = -3.055600 kcal Electronic energy + Delta-G solvation = -19908.612210 eV Core-core repulsion = 16824.068780 eV Total energy + Delta-G solvation = -3084.543429 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.10095 -39.02133 -37.32890 -36.47486 -34.50039 -32.21353 -31.20947 -29.54351 -28.86928 -27.13483 -26.07402 -24.97600 -23.20317 -22.73413 -21.14367 -20.75434 -18.68465 -17.57743 -17.40704 -16.98062 -16.68332 -16.40769 -15.86716 -15.62516 -15.57245 -15.12624 -14.82511 -14.46006 -14.20597 -13.80172 -13.71879 -13.22605 -13.09735 -12.96487 -12.86162 -12.70265 -12.67046 -12.38505 -12.34688 -12.01560 -11.91271 -11.68792 -11.40890 -11.30618 -10.62037 -10.58694 -10.24094 -9.37847 -9.09420 -8.23663 -6.36752 1.12438 1.41298 1.42939 1.53784 1.74349 1.92091 2.40531 2.93751 3.10644 3.51739 3.71808 4.04977 4.12983 4.19588 4.23020 4.35701 4.40068 4.43711 4.46465 4.55081 4.56167 4.63526 4.82744 4.83063 4.89124 4.91461 4.94836 4.97682 5.02034 5.22983 5.29777 5.36937 5.48098 5.69720 5.86938 6.04814 6.19494 6.29966 6.32891 6.51537 6.78029 6.93276 7.33214 8.88791 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.018795 B = 0.003797 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.429053 B = 7372.259628 C = 8324.393608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.417 6.417 3 C 0.059 3.941 4 C 0.063 3.937 5 N -0.701 5.701 6 C 0.152 3.848 7 C -0.251 4.251 8 C 0.041 3.959 9 N -0.347 5.347 10 N -0.364 5.364 11 C 0.162 3.838 12 H 0.080 0.920 13 C -0.136 4.136 14 C 0.034 3.966 15 C -0.534 4.534 16 H 0.076 0.924 17 C 0.001 3.999 18 N -0.934 5.934 19 Si 0.970 3.030 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.254 1.254 23 C 0.070 3.930 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.100 0.900 31 H 0.341 0.659 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.201 0.799 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.064 0.936 38 H -0.025 1.025 39 H -0.002 1.002 40 H 0.264 0.736 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 4.360 19.162 19.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C -0.018 4.018 4 C -0.066 4.066 5 N -0.333 5.333 6 C 0.023 3.977 7 C -0.263 4.263 8 C -0.145 4.145 9 N -0.168 5.168 10 N -0.145 5.145 11 C 0.061 3.939 12 H 0.098 0.902 13 C -0.194 4.194 14 C -0.004 4.004 15 C -0.573 4.573 16 H 0.094 0.906 17 C -0.197 4.197 18 N -0.574 5.574 19 Si 0.794 3.206 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.178 1.178 23 C -0.078 4.078 24 H 0.109 0.891 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.159 0.841 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.218 0.782 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.083 0.917 38 H -0.006 1.006 39 H 0.016 0.984 40 H 0.073 0.927 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.871 3.981 17.700 18.163 hybrid contribution -0.748 -0.145 0.022 0.763 sum 0.123 3.836 17.722 18.133 Atomic orbital electron populations 1.22848 0.79881 1.03445 1.00578 1.87811 1.21179 1.29156 1.95568 1.22713 0.93640 0.84468 1.00953 1.22040 0.93188 1.00859 0.90513 1.60554 1.06864 1.30346 1.35552 1.20027 0.87118 0.99621 0.90959 1.20102 1.15912 0.92596 0.97698 1.24170 0.99226 0.97502 0.93565 1.77261 1.25681 1.03881 1.09978 1.49140 1.51168 1.03657 1.10515 1.21476 0.97354 0.99722 0.75305 0.90159 1.21967 0.98965 0.94407 1.04106 1.19240 0.91988 0.94640 0.94578 1.21467 0.93834 1.50330 0.91634 0.90631 1.26018 0.94701 0.94557 1.04416 1.70135 1.01042 1.50824 1.35363 0.85369 0.78645 0.78245 0.78328 1.20216 1.20953 1.17761 1.22657 0.98969 0.97145 0.89053 0.89112 0.92585 0.94195 0.90897 0.93339 0.94111 0.88194 0.84086 0.89628 0.93372 0.78237 0.90999 0.89600 0.91709 1.00627 0.98387 0.92738 0.80050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -9.27 10.22 -148.98 -1.52 -10.79 16 3 C 0.06 1.08 6.28 71.98 0.45 1.53 16 4 C 0.06 1.14 6.11 86.30 0.53 1.67 16 5 N -0.70 -16.97 6.49 -517.93 -3.36 -20.33 16 6 C 0.15 3.44 6.17 85.56 0.53 3.97 16 7 C -0.25 -7.60 5.61 -20.14 -0.11 -7.71 16 8 C 0.04 1.34 11.96 85.24 1.02 2.36 16 9 N -0.35 -14.27 12.57 -57.02 -0.72 -14.99 16 10 N -0.36 -14.76 3.53 -327.48 -1.15 -15.92 16 11 C 0.16 6.92 3.35 44.99 0.15 7.07 16 12 H 0.08 3.53 8.14 -2.38 -0.02 3.51 16 13 C -0.14 -4.62 8.65 71.98 0.62 -4.00 16 14 C 0.03 1.80 4.77 29.85 0.14 1.95 16 15 C -0.53 -29.43 8.41 25.60 0.22 -29.22 16 16 H 0.08 3.84 7.06 -2.91 -0.02 3.82 16 17 C 0.00 0.07 5.46 84.66 0.46 0.54 16 18 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 19 Si 0.97 43.42 29.54 68.60 2.03 45.44 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 22 H -0.25 -10.52 7.11 99.48 0.71 -9.82 16 23 C 0.07 2.41 10.50 83.54 0.88 3.28 16 24 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 26 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.34 9.28 8.28 -89.69 -0.74 8.54 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.20 5.03 8.06 -2.91 -0.02 5.01 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.09 2.97 6.95 -2.39 -0.02 2.95 16 37 H 0.06 2.09 7.16 -2.39 -0.02 2.07 16 38 H -0.02 -1.55 8.14 -2.39 -0.02 -1.57 16 39 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 41 H 0.18 5.40 7.26 -2.91 -0.02 5.38 16 Total: -1.00 -70.11 344.14 1.94 -68.16 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.26 Total: 22.26 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 6.13 Total: -16.84 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -4.95 Total: -108.24 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -1.52 Total: -10.79 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -70.11 1.94 -68.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693478244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.107 kcal (2) G-P(sol) polarization free energy of solvation -70.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds