Wall clock time and date at job start Mon Mar 30 2020 04:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99762 * 2 1 4 4 C 1.53010 * 109.46643 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.46686 * 65.00708 * 4 3 2 6 6 C 1.46903 * 110.99711 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47197 * 179.97438 * 6 5 4 8 8 C 1.39864 * 126.04185 * 270.00127 * 7 6 5 9 9 N 1.30846 * 108.20128 * 179.74308 * 8 7 6 10 10 N 1.40078 * 108.20341 * 0.40055 * 9 8 7 11 11 C 1.46504 * 126.03647 * 179.85800 * 10 9 8 12 12 H 1.09002 * 109.46865 * 24.68715 * 11 10 9 13 13 C 1.53002 * 109.47132 * 144.69060 * 11 10 9 14 14 C 1.53002 * 109.47165 * 264.68843 * 11 10 9 15 15 C 1.50696 * 109.46919 * 174.99802 * 14 11 10 16 16 H 1.07999 * 120.00202 * 359.97438 * 15 14 11 17 17 C 1.37884 * 119.99746 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99573 * 0.27650 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47035 * 60.00183 * 19 17 15 21 21 H 1.48503 * 109.46845 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47237 * 299.99939 * 19 17 15 23 23 C 1.34947 * 107.92604 * 359.59257 * 10 9 8 24 24 H 1.08997 * 109.47126 * 59.99465 * 1 2 3 25 25 H 1.08997 * 109.47490 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46949 * 299.99805 * 1 2 3 27 27 H 1.09005 * 109.46932 * 60.01000 * 3 2 1 28 28 H 1.08994 * 109.47469 * 300.00326 * 3 2 1 29 29 H 1.08993 * 109.47387 * 305.00055 * 4 3 2 30 30 H 1.09000 * 109.46936 * 185.00286 * 4 3 2 31 31 H 1.00894 * 111.00335 * 56.04710 * 5 4 3 32 32 H 1.09001 * 109.46843 * 59.99369 * 6 5 4 33 33 H 1.09004 * 109.46704 * 299.99618 * 6 5 4 34 34 H 1.07998 * 125.89664 * 359.97438 * 8 7 6 35 35 H 1.09001 * 109.46743 * 299.99875 * 13 11 10 36 36 H 1.08994 * 109.47199 * 60.00032 * 13 11 10 37 37 H 1.09000 * 109.47048 * 180.02562 * 13 11 10 38 38 H 1.09000 * 109.46497 * 55.00067 * 14 11 10 39 39 H 1.08999 * 109.46623 * 295.00131 * 14 11 10 40 40 H 0.97001 * 120.00651 * 359.71956 * 18 17 15 41 41 H 1.08009 * 126.12437 * 180.22370 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9778 0.5624 -1.2544 6 6 5.4405 0.4304 -1.2896 7 6 5.8559 -0.2110 -2.5884 8 6 6.0020 -1.5827 -2.8192 9 7 6.3686 -1.7510 -4.0639 10 7 6.4764 -0.4893 -4.6628 11 6 6.8649 -0.2241 -6.0502 12 1 6.6409 -1.0971 -6.6634 13 6 6.0853 0.9826 -6.5765 14 6 8.3648 0.0713 -6.1123 15 6 8.7879 0.2228 -7.5507 16 1 8.0599 0.1183 -8.3416 17 6 10.1046 0.4937 -7.8571 18 7 10.9923 0.6145 -6.8943 19 14 10.6292 0.6808 -9.6402 20 1 9.8783 1.8009 -10.2621 21 1 12.0850 0.9677 -9.7004 22 1 10.3412 -0.5769 -10.3755 23 6 6.1534 0.4386 -3.7376 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6887 1.8463 0.8901 28 1 1.6886 1.8465 -0.8899 29 1 3.8508 0.5685 0.8426 30 1 3.9785 2.1765 0.0903 31 1 3.6425 1.0804 -2.0526 32 1 5.7693 -0.1908 -0.4564 33 1 5.8963 1.4173 -1.2091 34 1 5.8369 -2.3676 -2.0959 35 1 5.0167 0.7720 -6.5323 36 1 6.3093 1.8554 -5.9634 37 1 6.3740 1.1795 -7.6089 38 1 8.9162 -0.7508 -5.6560 39 1 8.5759 0.9943 -5.5723 40 1 10.7200 0.5171 -5.9684 41 1 6.1358 1.5080 -3.8876 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693478253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:42 Heat of formation + Delta-G solvation = 17.298962 kcal Electronic energy + Delta-G solvation = -19823.124093 eV Core-core repulsion = 16739.463303 eV Total energy + Delta-G solvation = -3083.660789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.80116 -38.24154 -36.17837 -35.32507 -32.71605 -31.22131 -29.60429 -28.54237 -26.83374 -26.38643 -24.68147 -23.37980 -22.15002 -21.70904 -19.93296 -19.42886 -16.98480 -16.87908 -16.38423 -16.17950 -15.40318 -14.81880 -14.67307 -14.27894 -14.18612 -13.74980 -13.72710 -13.39777 -12.85946 -12.73661 -12.43889 -12.08835 -11.95268 -11.82098 -11.62833 -11.48609 -11.31836 -11.16379 -10.87362 -10.35463 -10.25693 -10.10392 -10.06151 -9.86995 -8.93277 -8.72164 -8.44329 -8.41844 -7.90444 -6.47390 -4.19055 2.41262 3.08241 3.15159 3.38336 3.40394 3.58756 3.59231 4.30346 4.46821 4.80384 4.91645 5.00311 5.09874 5.12680 5.16889 5.21896 5.29549 5.32093 5.38536 5.45720 5.53158 5.59144 5.65467 5.67971 5.82722 5.95387 6.17093 6.35004 6.42156 6.46667 6.59084 6.90291 7.02741 7.07893 7.17065 7.26730 7.38119 7.58178 8.01727 8.25863 8.30864 8.73086 9.53789 10.92893 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.039881 B = 0.003048 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.928429 B = 9185.126650 C = 9293.415249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.064 3.936 4 C 0.058 3.942 5 N -0.677 5.677 6 C 0.145 3.855 7 C -0.255 4.255 8 C 0.053 3.947 9 N -0.301 5.301 10 N -0.345 5.345 11 C 0.160 3.840 12 H 0.093 0.907 13 C -0.147 4.147 14 C 0.007 3.993 15 C -0.603 4.603 16 H 0.054 0.946 17 C 0.018 3.982 18 N -0.907 5.907 19 Si 1.070 2.930 20 H -0.287 1.287 21 H -0.282 1.282 22 H -0.286 1.286 23 C 0.065 3.935 24 H 0.038 0.962 25 H 0.084 0.916 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.338 0.662 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.174 0.826 35 H 0.046 0.954 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.016 0.984 39 H 0.012 0.988 40 H 0.269 0.731 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.488 3.636 12.634 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.013 4.013 4 C -0.071 4.071 5 N -0.309 5.309 6 C 0.016 3.984 7 C -0.267 4.267 8 C -0.133 4.133 9 N -0.122 5.122 10 N -0.125 5.125 11 C 0.060 3.940 12 H 0.111 0.889 13 C -0.205 4.205 14 C -0.031 4.031 15 C -0.641 4.641 16 H 0.073 0.927 17 C -0.186 4.186 18 N -0.542 5.542 19 Si 0.898 3.102 20 H -0.213 1.213 21 H -0.207 1.207 22 H -0.213 1.213 23 C -0.085 4.085 24 H 0.057 0.943 25 H 0.103 0.897 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.156 0.844 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.192 0.808 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.080 0.920 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.810 2.283 10.820 19.293 hybrid contribution -1.506 1.500 1.515 2.610 sum -17.315 3.783 12.335 21.594 Atomic orbital electron populations 1.22725 0.81762 1.02674 0.99500 1.88034 1.18821 1.27125 1.95208 1.22555 0.93798 0.85215 0.99719 1.21982 0.92952 0.97685 0.94515 1.60488 1.11333 1.55770 1.03321 1.20029 0.86352 0.97716 0.94322 1.19719 1.17202 0.93563 0.96251 1.23580 0.99590 0.96101 0.94022 1.77359 1.23180 1.02776 1.08891 1.49275 1.49170 1.03188 1.10893 1.21644 0.98251 0.98984 0.75149 0.88937 1.22054 0.98049 0.96837 1.03550 1.19607 0.88159 0.96569 0.98766 1.21853 0.96972 1.54420 0.90902 0.92739 1.25883 0.92883 0.93611 1.06261 1.70776 1.36602 1.45562 1.01266 0.83519 0.76364 0.76596 0.73709 1.21317 1.20686 1.21276 1.22187 1.00358 0.96315 0.89654 0.94310 0.89724 0.94540 0.93194 0.93537 0.90119 0.93980 0.84390 0.90596 0.95250 0.80849 0.93537 0.92609 0.89122 0.96569 0.96958 0.92021 0.82068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.37 -4.14 10.65 -35.23 -0.38 -4.52 16 3 C 0.06 0.56 6.22 37.16 0.23 0.79 16 4 C 0.06 0.53 6.07 -3.82 -0.02 0.51 16 5 N -0.68 -7.81 6.44 -115.05 -0.74 -8.56 16 6 C 0.15 1.78 6.17 -4.98 -0.03 1.75 16 7 C -0.25 -3.97 5.61 -105.06 -0.59 -4.56 16 8 C 0.05 0.90 11.96 -17.36 -0.21 0.69 16 9 N -0.30 -6.14 12.58 30.62 0.39 -5.75 16 10 N -0.34 -6.85 3.53 -54.86 -0.19 -7.04 16 11 C 0.16 3.34 3.35 -67.93 -0.23 3.11 16 12 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 13 C -0.15 -2.57 8.64 37.16 0.32 -2.25 16 14 C 0.01 0.18 4.08 -27.88 -0.11 0.06 16 15 C -0.60 -16.43 8.41 -34.44 -0.29 -16.71 16 16 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 17 C 0.02 0.52 5.46 -17.82 -0.10 0.42 16 18 N -0.91 -27.54 13.65 55.43 0.76 -26.78 16 19 Si 1.07 24.63 29.90 -169.99 -5.08 19.55 16 20 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.06 1.09 10.50 -17.22 -0.18 0.91 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.34 3.81 8.72 -39.29 -0.34 3.47 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.17 2.47 8.06 -52.49 -0.42 2.04 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.92 7.16 -51.93 -0.37 0.55 16 37 H 0.09 1.65 6.95 -51.93 -0.36 1.29 16 38 H 0.02 0.45 8.00 -51.93 -0.42 0.04 16 39 H 0.01 0.32 8.01 -51.93 -0.42 -0.09 16 40 H 0.27 8.24 7.22 -40.82 -0.29 7.95 16 41 H 0.16 2.33 7.26 -52.48 -0.38 1.95 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -32.28 343.55 -6.99 -39.27 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.82 Total: 2.58 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -0.10 Total: -13.93 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.21 Total: -48.13 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.38 Total: -4.52 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.08 Total: 19.55 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.28 -6.99 -39.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693478253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.568 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds