Wall clock time and date at job start Mon Mar 30 2020 04:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00313 * 2 1 4 4 C 1.52997 * 109.47396 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47254 * 64.99580 * 4 3 2 6 6 C 1.46904 * 111.00029 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.46800 * 180.02562 * 6 5 4 8 8 C 1.39870 * 126.03816 * 90.03207 * 7 6 5 9 9 N 1.30841 * 108.20125 * 179.97438 * 8 7 6 10 10 N 1.40080 * 108.20578 * 359.97438 * 9 8 7 11 11 C 1.46500 * 126.03706 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47462 * 305.02670 * 11 10 9 13 13 C 1.53004 * 109.47372 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47027 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00083 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99977 * 179.97438 * 14 13 12 17 17 N 1.31505 * 120.00149 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99704 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47072 * 89.99770 * 18 16 14 20 20 H 1.48502 * 109.46800 * 210.00010 * 18 16 14 21 21 H 1.48497 * 109.47106 * 329.99711 * 18 16 14 22 22 C 1.34949 * 107.92705 * 359.75646 * 10 9 8 23 23 H 1.08998 * 109.47187 * 59.99969 * 1 2 3 24 24 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46799 * 300.00326 * 1 2 3 26 26 H 1.09001 * 109.46993 * 59.99365 * 3 2 1 27 27 H 1.09004 * 109.46505 * 300.00140 * 3 2 1 28 28 H 1.09002 * 109.47153 * 304.99576 * 4 3 2 29 29 H 1.09001 * 109.46832 * 184.99767 * 4 3 2 30 30 H 1.00908 * 110.99847 * 56.04959 * 5 4 3 31 31 H 1.08995 * 109.47167 * 300.00240 * 6 5 4 32 32 H 1.09003 * 109.46442 * 60.00214 * 6 5 4 33 33 H 1.07996 * 125.90411 * 359.94840 * 8 7 6 34 34 H 1.09007 * 109.46764 * 65.03003 * 11 10 9 35 35 H 1.09002 * 109.47426 * 185.02520 * 11 10 9 36 36 H 1.08994 * 109.47275 * 300.00222 * 12 11 10 37 37 H 1.09004 * 109.46871 * 60.00076 * 12 11 10 38 38 H 1.08997 * 109.46810 * 300.00025 * 13 12 11 39 39 H 1.09000 * 109.46452 * 60.00010 * 13 12 11 40 40 H 0.97003 * 120.00213 * 180.02562 * 17 16 14 41 41 H 1.07996 * 126.12826 * 180.23677 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9769 0.5626 -1.2561 6 6 5.4396 0.4307 -1.2925 7 6 5.8539 -0.2092 -2.5923 8 6 6.1611 0.4634 -3.7796 9 7 6.4755 -0.4277 -4.6846 10 7 6.3787 -1.6973 -4.1008 11 6 6.6452 -2.9747 -4.7667 12 6 5.7856 -3.0816 -6.0279 13 6 6.0645 -4.4154 -6.7237 14 6 5.2173 -4.5208 -7.9656 15 1 4.5474 -3.7167 -8.2322 16 6 5.2983 -5.6434 -8.7621 17 7 4.5594 -5.7352 -9.8461 18 14 6.4575 -7.0338 -8.3014 19 1 5.7450 -8.0052 -7.4331 20 1 6.9224 -7.7196 -9.5338 21 1 7.6268 -6.4820 -7.5710 22 6 6.0013 -1.5358 -2.8153 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8515 0.5683 0.8410 29 1 3.9785 2.1765 0.0889 30 1 3.6409 1.0809 -2.0541 31 1 5.8955 1.4175 -1.2121 32 1 5.7690 -0.1907 -0.4598 33 1 6.1418 1.5334 -3.9245 34 1 7.6992 -3.0293 -5.0396 35 1 6.4020 -3.7946 -4.0908 36 1 4.7318 -3.0270 -5.7551 37 1 6.0289 -2.2617 -6.7039 38 1 7.1183 -4.4695 -6.9967 39 1 5.8215 -5.2354 -6.0479 40 1 4.6161 -6.5251 -10.4063 41 1 5.8423 -2.3241 -2.0945 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693537897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:45 Heat of formation + Delta-G solvation = -2.535127 kcal Electronic energy + Delta-G solvation = -19339.725072 eV Core-core repulsion = 16255.204212 eV Total energy + Delta-G solvation = -3084.520860 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.06912 -38.93349 -37.08559 -36.42844 -34.63978 -32.65202 -32.04185 -29.90145 -28.65434 -27.00104 -25.51436 -24.60678 -22.83099 -22.40131 -21.61494 -20.84900 -18.96409 -17.75127 -17.54434 -16.89294 -16.52342 -16.43159 -16.19284 -15.58645 -15.49122 -15.11814 -15.03525 -14.74068 -14.37455 -13.93141 -13.81190 -13.48405 -13.30816 -12.96072 -12.89327 -12.65734 -12.52036 -12.38749 -11.92269 -11.85936 -11.78601 -11.61278 -11.43126 -11.25543 -10.78071 -10.52589 -10.31209 -9.38741 -9.08304 -8.30740 -6.36871 1.07857 1.37142 1.40354 1.52116 1.69995 1.90037 2.36448 2.98855 3.04502 3.51229 3.63434 4.02884 4.08797 4.15040 4.21380 4.28875 4.39834 4.42253 4.47812 4.55546 4.57347 4.61386 4.69532 4.74297 4.79157 4.88332 4.90882 4.92044 5.01197 5.03572 5.30374 5.42060 5.49913 5.62041 5.81704 6.16793 6.21401 6.27796 6.37160 6.57367 6.71187 6.87348 7.27612 8.86775 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.003103 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.409051 B = 9020.289823 C = 9875.784147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.059 3.941 4 C 0.061 3.939 5 N -0.696 5.696 6 C 0.151 3.849 7 C -0.248 4.248 8 C 0.043 3.957 9 N -0.341 5.341 10 N -0.375 5.375 11 C 0.136 3.864 12 C -0.098 4.098 13 C -0.006 4.006 14 C -0.539 4.539 15 H 0.021 0.979 16 C -0.001 4.001 17 N -0.955 5.955 18 Si 0.960 3.040 19 H -0.262 1.262 20 H -0.286 1.286 21 H -0.238 1.238 22 C 0.070 3.930 23 H 0.041 0.959 24 H 0.085 0.915 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.339 0.661 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.199 0.801 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.029 0.971 39 H 0.033 0.967 40 H 0.267 0.733 41 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.126 14.026 25.681 29.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C -0.017 4.017 4 C -0.068 4.068 5 N -0.328 5.328 6 C 0.022 3.978 7 C -0.260 4.260 8 C -0.143 4.143 9 N -0.163 5.163 10 N -0.156 5.156 11 C 0.015 3.985 12 C -0.136 4.136 13 C -0.044 4.044 14 C -0.577 4.577 15 H 0.039 0.961 16 C -0.197 4.197 17 N -0.596 5.596 18 Si 0.782 3.218 19 H -0.187 1.187 20 H -0.212 1.212 21 H -0.162 1.162 22 C -0.077 4.077 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.157 0.843 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.216 0.784 34 H 0.108 0.892 35 H 0.141 0.859 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 0.495 12.785 24.497 27.637 hybrid contribution -0.333 0.697 -0.140 0.785 sum 0.163 13.482 24.357 27.840 Atomic orbital electron populations 1.22840 0.80536 1.03192 1.00451 1.87973 1.20369 1.28757 1.95447 1.22699 0.93676 0.84577 1.00790 1.22012 0.93165 0.98484 0.93091 1.60449 1.11163 1.56890 1.04343 1.20023 0.86752 0.98569 0.92477 1.20116 1.15575 0.92342 0.98006 1.24212 0.98791 1.00267 0.91050 1.77348 1.25946 0.89032 1.23966 1.48861 1.52191 1.05898 1.08692 1.21954 1.00919 0.80594 0.95022 1.21478 0.98344 0.98463 0.95359 1.19454 0.96539 0.94092 0.94285 1.21465 1.23838 1.03544 1.08886 0.96100 1.26156 0.97524 1.01662 0.94341 1.70090 1.42591 1.30530 1.16356 0.85523 0.79933 0.78176 0.78183 1.18682 1.21185 1.16152 1.22895 0.98466 0.99378 0.87000 0.94001 0.89637 0.92857 0.91242 0.93302 0.90503 0.91797 0.84312 0.93284 0.90125 0.78392 0.89228 0.85880 0.94039 0.93962 0.95276 0.94830 0.92407 0.78751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -8.39 10.65 -148.98 -1.59 -9.97 16 3 C 0.06 0.85 6.22 71.98 0.45 1.30 16 4 C 0.06 0.84 6.07 86.30 0.52 1.37 16 5 N -0.70 -12.77 6.44 -517.93 -3.34 -16.11 16 6 C 0.15 2.56 6.17 85.55 0.53 3.09 16 7 C -0.25 -5.76 5.61 -20.14 -0.11 -5.87 16 8 C 0.04 1.12 11.96 85.24 1.02 2.14 16 9 N -0.34 -11.62 12.42 -57.02 -0.71 -12.33 16 10 N -0.38 -11.66 3.68 -348.06 -1.28 -12.94 16 11 C 0.14 4.15 6.51 86.38 0.56 4.71 16 12 C -0.10 -4.03 5.34 30.59 0.16 -3.87 16 13 C -0.01 -0.27 4.04 29.85 0.12 -0.15 16 14 C -0.54 -32.21 9.66 25.60 0.25 -31.96 16 15 H 0.02 1.40 7.99 -2.91 -0.02 1.37 16 16 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 17 N -0.96 -61.51 13.96 21.45 0.30 -61.21 16 18 Si 0.96 43.94 27.47 68.60 1.88 45.83 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.24 -9.83 6.54 99.48 0.65 -9.17 16 22 C 0.07 1.76 11.36 83.54 0.95 2.71 16 23 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.34 6.31 8.72 -89.69 -0.78 5.53 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.20 3.84 8.06 -2.91 -0.02 3.82 16 34 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 35 H 0.12 2.97 8.07 -2.39 -0.02 2.95 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.03 1.29 7.20 -2.39 -0.02 1.28 16 39 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 40 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 41 H 0.20 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -76.17 346.46 1.59 -74.58 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.15 Total: 16.61 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: 6.16 Total: -24.46 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -5.02 Total: -102.59 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -1.59 Total: -9.97 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.83 kcal Total: -76.17 1.59 -74.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693537897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.049 kcal (2) G-P(sol) polarization free energy of solvation -76.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds