Wall clock time and date at job start Mon Mar 30 2020 05:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47250 * 2 1 4 4 C 1.53001 * 109.47104 * 240.00122 * 2 1 3 5 5 C 1.50704 * 109.46783 * 175.00231 * 4 2 1 6 6 H 1.07994 * 120.00213 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99343 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00374 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99608 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46913 * 60.00013 * 9 7 5 11 11 H 1.48499 * 109.47178 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47309 * 300.00170 * 9 7 5 13 13 N 1.46899 * 109.46811 * 119.99718 * 2 1 3 14 14 C 1.46893 * 111.00276 * 274.99689 * 13 2 1 15 15 C 1.52997 * 109.47230 * 179.97438 * 14 13 2 16 16 H 1.08998 * 109.40545 * 295.17003 * 15 14 13 17 17 C 1.52849 * 109.40574 * 175.41163 * 15 14 13 18 18 N 1.46928 * 109.52251 * 227.32249 * 17 15 14 19 19 C 1.44563 * 110.58821 * 65.33925 * 18 17 15 20 20 C 1.53516 * 109.41790 * 304.48957 * 19 18 17 21 21 N 1.43342 * 111.28939 * 355.38039 * 20 19 18 22 22 C 1.44122 * 119.24203 * 285.87446 * 21 20 19 23 23 C 1.53243 * 110.21994 * 97.91102 * 22 21 20 24 24 C 1.43880 * 114.62606 * 290.19896 * 18 17 15 25 25 H 1.09002 * 109.47215 * 59.99776 * 1 2 3 26 26 H 1.09002 * 109.47250 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47270 * 300.00160 * 1 2 3 28 28 H 1.09002 * 109.46588 * 294.99612 * 4 2 1 29 29 H 1.08998 * 109.47307 * 54.99880 * 4 2 1 30 30 H 0.97003 * 119.99688 * 180.02562 * 8 7 5 31 31 H 1.00909 * 110.99529 * 151.04442 * 13 2 1 32 32 H 1.09003 * 109.46873 * 60.00517 * 14 13 2 33 33 H 1.08999 * 109.47304 * 300.00263 * 14 13 2 34 34 H 1.08996 * 109.46174 * 347.33572 * 17 15 14 35 35 H 1.08998 * 109.46181 * 107.30570 * 17 15 14 36 36 H 1.09001 * 109.47976 * 184.51207 * 19 18 17 37 37 H 1.08998 * 109.48286 * 64.47165 * 19 18 17 38 38 H 1.08998 * 109.11445 * 115.84579 * 20 19 18 39 39 H 1.09004 * 109.11555 * 234.97327 * 20 19 18 40 40 H 1.09005 * 109.34694 * 218.14074 * 22 21 20 41 41 H 1.08999 * 109.35207 * 337.67483 * 22 21 20 42 42 H 1.09001 * 110.01782 * 179.10949 * 23 22 21 43 43 H 1.08990 * 110.10209 * 57.71017 * 23 22 21 44 44 H 1.09008 * 108.80677 * 156.09951 * 24 18 17 45 45 H 1.08996 * 108.80897 * 274.47747 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0855 -0.5395 7 6 4.2304 -1.1935 -2.3577 8 7 3.5765 -1.8386 -3.2989 9 14 6.0920 -1.0611 -2.4367 10 1 6.6845 -1.6862 -1.2270 11 1 6.5872 -1.7623 -3.6485 12 1 6.4844 0.3697 -2.4971 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2226 2.3469 15 6 2.5949 -0.5331 3.5745 16 1 1.8741 -1.3016 3.8536 17 6 2.7684 0.4443 4.7367 18 7 4.0792 0.2318 5.3655 19 6 5.1439 0.5681 4.4473 20 6 4.9751 -0.2390 3.1524 21 7 3.8871 -1.1666 3.2554 22 6 4.0492 -2.3562 4.0527 23 6 3.4366 -2.1501 5.4421 24 6 4.2030 -1.0047 6.0906 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.7516 -1.7715 -1.2055 29 1 1.6054 -0.2617 -2.1370 30 1 4.0610 -2.2460 -4.0340 31 1 2.9173 -1.1205 1.0287 32 1 1.0870 0.6163 2.5525 33 1 2.7588 1.0462 2.1182 34 1 2.7059 1.4666 4.3639 35 1 1.9814 0.2773 5.4722 36 1 6.1052 0.3287 4.9020 37 1 5.1046 1.6333 4.2193 38 1 4.7829 0.4464 2.3270 39 1 5.8945 -0.7894 2.9524 40 1 3.5527 -3.1919 3.5595 41 1 5.1110 -2.5800 4.1557 42 1 3.5470 -3.0568 6.0368 43 1 2.3822 -1.8896 5.3517 44 1 5.2575 -1.2750 6.1470 45 1 3.8236 -0.8585 7.1019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695792087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:42 Heat of formation + Delta-G solvation = 19.739772 kcal Electronic energy + Delta-G solvation = -22224.104284 eV Core-core repulsion = 19276.382431 eV Total energy + Delta-G solvation = -2947.721853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.15703 -36.52268 -34.30940 -33.36516 -32.72065 -31.84030 -29.30943 -27.30641 -26.05186 -25.65314 -24.21674 -22.95358 -22.00023 -20.26621 -19.29091 -18.64893 -17.01700 -16.41550 -16.25637 -15.63293 -14.80969 -14.51566 -14.43182 -13.96296 -13.73895 -13.40748 -13.22790 -12.91343 -12.38153 -12.34773 -12.13378 -11.89754 -11.75648 -11.67613 -11.45718 -11.22451 -11.12902 -10.95590 -10.81512 -10.66971 -10.45596 -10.41495 -10.22216 -10.06340 -9.14433 -8.99268 -8.57502 -8.32676 -7.54700 -7.35418 -5.96117 -3.97900 3.34207 3.38825 3.40739 3.69074 4.20691 4.48381 4.59839 4.69301 4.86464 4.94045 5.11951 5.25143 5.29358 5.36767 5.41546 5.54883 5.58387 5.60997 5.68270 5.72932 5.75053 5.87374 5.94631 5.96268 5.97767 6.08004 6.10552 6.24509 6.28806 6.35006 6.43012 6.62439 6.97330 7.01593 7.06232 7.29046 7.42029 7.65096 7.71522 7.73171 8.04367 8.22608 8.44196 8.60602 9.07568 9.65301 11.15021 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.019159 B = 0.006173 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.106744 B = 4535.146499 C = 5381.976943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.086 3.914 3 H 0.024 0.976 4 C 0.022 3.978 5 C -0.516 4.516 6 H 0.050 0.950 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.676 5.676 14 C 0.071 3.929 15 C 0.069 3.931 16 H 0.089 0.911 17 C 0.047 3.953 18 N -0.574 5.574 19 C 0.039 3.961 20 C 0.049 3.951 21 N -0.561 5.561 22 C 0.082 3.918 23 C -0.189 4.189 24 C 0.083 3.917 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.034 0.966 28 H 0.024 0.976 29 H 0.018 0.982 30 H 0.260 0.740 31 H 0.366 0.634 32 H 0.061 0.939 33 H 0.018 0.982 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 2.435 17.872 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.042 0.958 4 C -0.016 4.016 5 C -0.554 4.554 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.716 3.284 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.312 5.312 14 C -0.060 4.060 15 C -0.040 4.040 16 H 0.107 0.893 17 C -0.083 4.083 18 N -0.296 5.296 19 C -0.091 4.091 20 C -0.081 4.081 21 N -0.283 5.283 22 C -0.046 4.046 23 C -0.229 4.229 24 C -0.045 4.045 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.189 0.811 32 H 0.080 0.920 33 H 0.036 0.964 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.467 2.197 17.782 17.923 hybrid contribution 1.933 0.294 -0.220 1.967 sum 1.466 2.491 17.562 17.798 Atomic orbital electron populations 1.21790 0.97068 1.01133 0.99209 1.21593 0.93113 0.95703 0.91935 0.95817 1.19258 0.95382 0.96120 0.90810 1.21111 0.92197 1.34121 1.07989 0.93139 1.24966 0.98014 0.95324 0.95784 1.69953 1.35448 1.35800 1.12054 0.86722 0.86250 0.78024 0.77365 1.20224 1.21400 1.20492 1.60483 1.35934 1.31176 1.03581 1.21962 0.98490 0.93813 0.91693 1.22332 0.90645 0.96591 0.94481 0.89308 1.22486 0.90119 1.00027 0.95620 1.57616 1.03387 1.34181 1.34404 1.22426 0.93521 1.00480 0.92648 1.21967 0.93397 0.94943 0.97768 1.56936 1.03086 1.09379 1.58888 1.21520 1.00266 0.92435 0.90362 1.23043 1.01587 0.99723 0.98596 1.21197 0.99969 0.86581 0.96773 0.93586 0.92771 0.94682 0.95728 0.96330 0.93027 0.81057 0.92016 0.96422 0.90559 0.90909 0.91448 0.90683 0.90322 0.91095 0.90834 0.92213 0.90863 0.90421 0.92046 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.41 37.16 0.35 -2.13 16 2 C 0.09 1.84 2.59 -67.71 -0.18 1.67 16 3 H 0.02 0.52 7.80 -51.93 -0.40 0.12 16 4 C 0.02 0.56 4.57 -27.88 -0.13 0.44 16 5 C -0.52 -14.38 8.12 -34.44 -0.28 -14.66 16 6 H 0.05 1.38 7.49 -52.49 -0.39 0.98 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.68 -13.30 6.30 -106.73 -0.67 -13.97 16 14 C 0.07 1.14 4.61 -3.83 -0.02 1.13 16 15 C 0.07 0.94 2.05 -67.51 -0.14 0.80 16 16 H 0.09 1.24 6.21 -51.93 -0.32 0.92 16 17 C 0.05 0.55 5.14 -3.89 -0.02 0.53 16 18 N -0.57 -6.72 4.37 -239.25 -1.05 -7.76 16 19 C 0.04 0.47 6.10 -4.81 -0.03 0.44 16 20 C 0.05 0.69 5.83 -5.44 -0.03 0.66 16 21 N -0.56 -8.08 3.12 -231.01 -0.72 -8.80 16 22 C 0.08 1.04 5.80 -5.18 -0.03 1.01 16 23 C -0.19 -1.96 5.75 -26.96 -0.16 -2.12 16 24 C 0.08 0.87 5.74 -5.79 -0.03 0.83 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.03 0.57 7.45 -51.93 -0.39 0.18 16 28 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.37 8.07 6.35 -39.29 -0.25 7.82 16 32 H 0.06 0.93 7.44 -51.93 -0.39 0.55 16 33 H 0.02 0.30 7.10 -51.93 -0.37 -0.07 16 34 H 0.08 0.92 7.57 -51.93 -0.39 0.52 16 35 H 0.07 0.79 7.90 -51.93 -0.41 0.38 16 36 H 0.07 0.73 7.82 -51.93 -0.41 0.33 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.24 7.13 -51.93 -0.37 0.87 16 39 H 0.07 0.98 8.02 -51.93 -0.42 0.57 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.85 5.30 -51.93 -0.28 0.57 16 44 H 0.06 0.63 7.64 -51.92 -0.40 0.23 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -29.17 331.63 -10.62 -39.79 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.10 Total: 5.01 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -0.79 Total: -9.78 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -1.70 Total: -56.73 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.17 -10.62 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695792087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.529 kcal (2) G-P(sol) polarization free energy of solvation -29.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds