Wall clock time and date at job start Mon Mar 30 2020 05:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47250 * 2 1 4 4 C 1.53001 * 109.47104 * 240.00122 * 2 1 3 5 5 C 1.50704 * 109.46783 * 175.00231 * 4 2 1 6 6 H 1.07994 * 120.00213 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99343 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00374 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99608 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46913 * 60.00013 * 9 7 5 11 11 H 1.48499 * 109.47178 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47309 * 300.00170 * 9 7 5 13 13 N 1.46899 * 109.46811 * 119.99718 * 2 1 3 14 14 C 1.46893 * 111.00276 * 274.99689 * 13 2 1 15 15 C 1.52997 * 109.47230 * 179.97438 * 14 13 2 16 16 H 1.08998 * 109.40545 * 295.17003 * 15 14 13 17 17 C 1.52849 * 109.40574 * 175.41163 * 15 14 13 18 18 N 1.46928 * 109.52251 * 227.32249 * 17 15 14 19 19 C 1.44563 * 110.58821 * 65.33925 * 18 17 15 20 20 C 1.53516 * 109.41790 * 304.48957 * 19 18 17 21 21 N 1.43342 * 111.28939 * 355.38039 * 20 19 18 22 22 C 1.44122 * 119.24203 * 285.87446 * 21 20 19 23 23 C 1.53243 * 110.21994 * 97.91102 * 22 21 20 24 24 C 1.43880 * 114.62606 * 290.19896 * 18 17 15 25 25 H 1.09002 * 109.47215 * 59.99776 * 1 2 3 26 26 H 1.09002 * 109.47250 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47270 * 300.00160 * 1 2 3 28 28 H 1.09002 * 109.46588 * 294.99612 * 4 2 1 29 29 H 1.08998 * 109.47307 * 54.99880 * 4 2 1 30 30 H 0.97003 * 119.99688 * 180.02562 * 8 7 5 31 31 H 1.00909 * 110.99529 * 151.04442 * 13 2 1 32 32 H 1.09003 * 109.46873 * 60.00517 * 14 13 2 33 33 H 1.08999 * 109.47304 * 300.00263 * 14 13 2 34 34 H 1.08996 * 109.46174 * 347.33572 * 17 15 14 35 35 H 1.08998 * 109.46181 * 107.30570 * 17 15 14 36 36 H 1.09001 * 109.47976 * 184.51207 * 19 18 17 37 37 H 1.08998 * 109.48286 * 64.47165 * 19 18 17 38 38 H 1.08998 * 109.11445 * 115.84579 * 20 19 18 39 39 H 1.09004 * 109.11555 * 234.97327 * 20 19 18 40 40 H 1.09005 * 109.34694 * 218.14074 * 22 21 20 41 41 H 1.08999 * 109.35207 * 337.67483 * 22 21 20 42 42 H 1.09001 * 110.01782 * 179.10949 * 23 22 21 43 43 H 1.08990 * 110.10209 * 57.71017 * 23 22 21 44 44 H 1.09008 * 108.80677 * 156.09951 * 24 18 17 45 45 H 1.08996 * 108.80897 * 274.47747 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0855 -0.5395 7 6 4.2304 -1.1935 -2.3577 8 7 3.5765 -1.8386 -3.2989 9 14 6.0920 -1.0611 -2.4367 10 1 6.6845 -1.6862 -1.2270 11 1 6.5872 -1.7623 -3.6485 12 1 6.4844 0.3697 -2.4971 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2226 2.3469 15 6 2.5949 -0.5331 3.5745 16 1 1.8741 -1.3016 3.8536 17 6 2.7684 0.4443 4.7367 18 7 4.0792 0.2318 5.3655 19 6 5.1439 0.5681 4.4473 20 6 4.9751 -0.2390 3.1524 21 7 3.8871 -1.1666 3.2554 22 6 4.0492 -2.3562 4.0527 23 6 3.4366 -2.1501 5.4421 24 6 4.2030 -1.0047 6.0906 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.7516 -1.7715 -1.2055 29 1 1.6054 -0.2617 -2.1370 30 1 4.0610 -2.2460 -4.0340 31 1 2.9173 -1.1205 1.0287 32 1 1.0870 0.6163 2.5525 33 1 2.7588 1.0462 2.1182 34 1 2.7059 1.4666 4.3639 35 1 1.9814 0.2773 5.4722 36 1 6.1052 0.3287 4.9020 37 1 5.1046 1.6333 4.2193 38 1 4.7829 0.4464 2.3270 39 1 5.8945 -0.7894 2.9524 40 1 3.5527 -3.1919 3.5595 41 1 5.1110 -2.5800 4.1557 42 1 3.5470 -3.0568 6.0368 43 1 2.3822 -1.8896 5.3517 44 1 5.2575 -1.2750 6.1470 45 1 3.8236 -0.8585 7.1019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695792087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:41 Heat of formation + Delta-G solvation = -0.385724 kcal Electronic energy + Delta-G solvation = -22224.976991 eV Core-core repulsion = 19276.382431 eV Total energy + Delta-G solvation = -2948.594560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.15565 -38.15091 -35.46755 -34.80216 -34.11175 -33.26167 -30.74411 -29.25143 -27.16887 -26.59453 -25.51497 -24.75321 -23.23771 -21.24301 -20.98169 -19.70558 -18.49261 -18.06298 -17.46808 -16.73139 -16.50415 -16.12421 -15.80473 -15.27561 -14.84468 -14.66633 -14.30093 -14.21546 -13.78125 -13.66891 -13.46205 -13.28558 -13.09731 -13.06787 -12.87462 -12.66286 -12.58399 -12.46355 -12.34691 -12.24102 -11.86333 -11.76246 -11.49269 -11.43669 -11.12379 -10.95940 -10.55809 -9.54156 -9.03322 -8.47607 -8.17740 -6.27091 1.37493 1.40147 1.47573 2.40470 2.72977 3.14121 3.21798 3.48662 3.70114 3.87803 3.96875 4.05926 4.16003 4.32030 4.39068 4.42538 4.45803 4.51622 4.60246 4.65329 4.68772 4.76095 4.78686 4.80952 4.87438 4.93656 4.99481 5.03863 5.05787 5.11035 5.14872 5.19019 5.25766 5.35594 5.52082 5.58472 5.85909 6.02313 6.23833 6.33643 6.46669 6.57749 6.67264 6.84829 6.87587 7.40729 8.93902 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.019159 B = 0.006173 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.106744 B = 4535.146499 C = 5381.976943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.094 3.906 3 H 0.016 0.984 4 C 0.029 3.971 5 C -0.525 4.525 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.958 3.042 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.270 1.270 13 N -0.677 5.677 14 C 0.074 3.926 15 C 0.078 3.922 16 H 0.088 0.912 17 C 0.054 3.946 18 N -0.575 5.575 19 C 0.048 3.952 20 C 0.053 3.947 21 N -0.584 5.584 22 C 0.081 3.919 23 C -0.177 4.177 24 C 0.082 3.918 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.062 0.938 28 H -0.006 1.006 29 H -0.008 1.008 30 H 0.262 0.738 31 H 0.351 0.649 32 H 0.076 0.924 33 H 0.007 0.993 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.615 2.991 20.203 20.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.016 4.016 3 H 0.034 0.966 4 C -0.008 4.008 5 C -0.563 4.563 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.572 5.572 9 Si 0.783 3.217 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.195 1.195 13 N -0.311 5.311 14 C -0.057 4.057 15 C -0.032 4.032 16 H 0.106 0.894 17 C -0.076 4.076 18 N -0.297 5.297 19 C -0.083 4.083 20 C -0.077 4.077 21 N -0.306 5.306 22 C -0.046 4.046 23 C -0.218 4.218 24 C -0.046 4.046 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.071 0.929 31 H 0.172 0.828 32 H 0.094 0.906 33 H 0.026 0.974 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.100 2.766 20.141 20.331 hybrid contribution 1.727 0.098 -0.971 1.984 sum 1.827 2.863 19.170 19.468 Atomic orbital electron populations 1.21690 0.94566 1.01269 1.00798 1.21420 0.95069 0.94441 0.90664 0.96553 1.19117 0.94872 0.94532 0.92301 1.21404 0.93175 1.33797 1.07941 0.92932 1.25851 1.03147 0.94911 0.95385 1.70090 1.37485 1.36827 1.12775 0.85611 0.80088 0.78403 0.77595 1.19295 1.21015 1.19531 1.60533 1.34861 1.31885 1.03806 1.22063 0.99240 0.93163 0.91220 1.22248 0.90286 0.96716 0.93922 0.89387 1.22414 0.90824 0.99206 0.95109 1.57706 1.03096 1.34928 1.33935 1.22348 0.94299 1.00090 0.91545 1.21868 0.93021 0.94648 0.98203 1.56840 1.03480 1.10098 1.60224 1.21507 1.00497 0.91174 0.91447 1.22931 1.01053 1.00655 0.97114 1.21267 1.00333 0.85929 0.97058 0.93188 0.93338 0.91888 0.98760 0.98948 0.92922 0.82839 0.90557 0.97442 0.90734 0.89225 0.90190 0.90563 0.92909 0.91520 0.92389 0.91980 0.89036 0.90696 0.91657 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.41 71.98 0.68 -3.86 16 2 C 0.09 4.06 2.59 44.92 0.12 4.17 16 3 H 0.02 0.73 7.80 -2.39 -0.02 0.71 16 4 C 0.03 1.58 4.57 29.85 0.14 1.71 16 5 C -0.53 -29.95 8.12 25.60 0.21 -29.74 16 6 H 0.05 2.92 7.49 -2.91 -0.02 2.90 16 7 C 0.00 0.29 5.46 84.65 0.46 0.75 16 8 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 9 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 13 N -0.68 -26.74 6.30 -491.59 -3.10 -29.84 16 14 C 0.07 2.29 4.61 86.30 0.40 2.69 16 15 C 0.08 2.01 2.05 44.77 0.09 2.10 16 16 H 0.09 2.31 6.21 -2.39 -0.01 2.30 16 17 C 0.05 1.15 5.14 86.25 0.44 1.59 16 18 N -0.57 -11.95 4.37 -910.84 -3.98 -15.94 16 19 C 0.05 1.04 6.10 86.91 0.53 1.57 16 20 C 0.05 1.44 5.83 87.14 0.51 1.95 16 21 N -0.58 -16.44 3.12 -884.79 -2.76 -19.20 16 22 C 0.08 1.96 5.80 86.90 0.50 2.46 16 23 C -0.18 -3.23 5.75 30.45 0.18 -3.05 16 24 C 0.08 1.46 5.74 86.64 0.50 1.95 16 25 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 1.92 7.45 -2.39 -0.02 1.90 16 28 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.35 15.78 6.35 -89.69 -0.57 15.21 16 32 H 0.08 2.15 7.44 -2.39 -0.02 2.13 16 33 H 0.01 0.25 7.10 -2.39 -0.02 0.23 16 34 H 0.07 1.62 7.57 -2.39 -0.02 1.61 16 35 H 0.09 1.63 7.90 -2.39 -0.02 1.61 16 36 H 0.08 1.55 7.82 -2.39 -0.02 1.53 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 1.69 7.13 -2.39 -0.02 1.67 16 39 H 0.07 1.83 8.02 -2.39 -0.02 1.81 16 40 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.06 1.44 7.85 -2.39 -0.02 1.43 16 42 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.43 5.30 -2.39 -0.01 1.42 16 44 H 0.06 1.14 7.64 -2.38 -0.02 1.12 16 45 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -63.36 331.63 -2.40 -65.77 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.38 Total: 25.03 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 4.75 Total: -15.71 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -9.55 Total: -122.14 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -63.36 -2.40 -65.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695792087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.380 kcal (2) G-P(sol) polarization free energy of solvation -63.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds