Wall clock time and date at job start Mon Mar 30 2020 05:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47132 * 2 1 4 4 C 1.53000 * 109.46627 * 240.00821 * 2 1 3 5 5 C 1.50708 * 109.46973 * 174.99914 * 4 2 1 6 6 H 1.07991 * 119.99789 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00008 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00089 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99938 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 269.99556 * 9 7 5 11 11 H 1.48503 * 109.47261 * 149.99737 * 9 7 5 12 12 H 1.48500 * 109.47454 * 29.99730 * 9 7 5 13 13 N 1.46893 * 109.47262 * 120.00649 * 2 1 3 14 14 C 1.46902 * 110.99914 * 274.99877 * 13 2 1 15 15 C 1.53002 * 109.46924 * 180.02562 * 14 13 2 16 16 H 1.08997 * 109.10685 * 65.86602 * 15 14 13 17 17 C 1.53513 * 109.11202 * 184.99949 * 15 14 13 18 18 N 1.44568 * 109.41667 * 125.09000 * 17 15 14 19 19 C 1.46931 * 110.58683 * 55.50418 * 18 17 15 20 20 C 1.52846 * 109.52401 * 294.66018 * 19 18 17 21 21 N 1.43344 * 109.11539 * 306.79281 * 15 14 13 22 22 C 1.44133 * 119.24342 * 313.65067 * 21 15 14 23 23 C 1.53241 * 110.22089 * 262.10011 * 22 21 15 24 24 C 1.43878 * 117.17479 * 281.62281 * 18 17 15 25 25 H 1.08998 * 109.47155 * 59.99494 * 1 2 3 26 26 H 1.09001 * 109.47546 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47094 * 299.99543 * 1 2 3 28 28 H 1.08994 * 109.48028 * 54.99972 * 4 2 1 29 29 H 1.09000 * 109.47206 * 294.99826 * 4 2 1 30 30 H 0.96997 * 119.99848 * 180.02562 * 8 7 5 31 31 H 1.00899 * 110.99667 * 151.04297 * 13 2 1 32 32 H 1.09001 * 109.46786 * 299.99654 * 14 13 2 33 33 H 1.08994 * 109.47208 * 59.99977 * 14 13 2 34 34 H 1.09001 * 109.47712 * 245.06999 * 17 15 14 35 35 H 1.08995 * 109.48051 * 5.09245 * 17 15 14 36 36 H 1.08998 * 109.45917 * 54.67354 * 19 18 17 37 37 H 1.08999 * 109.46149 * 174.64611 * 19 18 17 38 38 H 1.08997 * 109.40270 * 132.68065 * 20 19 18 39 39 H 1.08994 * 109.40368 * 252.52036 * 20 19 18 40 40 H 1.09007 * 109.34087 * 22.32833 * 22 21 15 41 41 H 1.08997 * 109.34219 * 142.01478 * 22 21 15 42 42 H 1.08993 * 110.01816 * 180.89395 * 23 22 21 43 43 H 1.09007 * 110.01111 * 302.23624 * 23 22 21 44 44 H 1.08996 * 108.80605 * 217.71280 * 24 18 17 45 45 H 1.09004 * 108.80583 * 335.97414 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3129 6 1 4.0789 -0.0862 -0.5394 7 6 4.2303 -1.1932 -2.3581 8 7 5.5411 -1.1009 -2.4133 9 14 3.3013 -2.1082 -3.6957 10 1 3.1697 -3.5382 -3.3175 11 1 4.0451 -2.0014 -4.9766 12 1 1.9506 -1.5124 -3.8565 13 7 2.0197 -0.6926 1.1993 14 6 2.0825 0.2224 2.3468 15 6 2.5963 -0.5332 3.5740 16 1 3.6297 -0.8338 3.4011 17 6 2.5404 0.3949 4.7956 18 7 1.7748 -0.2385 5.8457 19 6 2.3328 -1.5592 6.1672 20 6 2.1735 -2.4878 4.9636 21 7 1.7950 -1.7049 3.7734 22 6 0.3593 -1.5958 3.7065 23 6 -0.2294 -1.4808 5.1166 24 6 0.3415 -0.2065 5.7246 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6053 -0.2616 -2.1371 29 1 1.7515 -1.7714 -1.2059 30 1 6.0253 -1.5076 -3.1488 31 1 2.9173 -1.1206 1.0284 32 1 2.7590 1.0460 2.1182 33 1 1.0872 0.6161 2.5525 34 1 3.5524 0.5898 5.1505 35 1 2.0658 1.3354 4.5161 36 1 3.3905 -1.4572 6.4097 37 1 1.8030 -1.9789 7.0223 38 1 3.1164 -3.0008 4.7748 39 1 1.3969 -3.2231 5.1739 40 1 0.0910 -0.7105 3.1298 41 1 -0.0477 -2.4815 3.2187 42 1 -1.3160 -1.4144 5.0630 43 1 0.0624 -2.3445 5.7142 44 1 -0.0916 -0.0650 6.7148 45 1 0.0607 0.6390 5.0965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695792088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:45 Heat of formation + Delta-G solvation = 27.102671 kcal Electronic energy + Delta-G solvation = -22110.578461 eV Core-core repulsion = 19163.175887 eV Total energy + Delta-G solvation = -2947.402574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15900 -36.77104 -34.31625 -33.62061 -32.50725 -31.74077 -29.58626 -27.85149 -26.08484 -25.59106 -24.38131 -22.73638 -21.99741 -20.10315 -19.39967 -18.45137 -17.24144 -16.77444 -16.48391 -15.65489 -15.01185 -14.55854 -14.35451 -14.04243 -13.69717 -13.34183 -12.95646 -12.83347 -12.75197 -12.41801 -12.20215 -12.00108 -11.94105 -11.68626 -11.57149 -11.50383 -11.30202 -11.09888 -10.86913 -10.67250 -10.52032 -10.31797 -10.08333 -9.77952 -9.43244 -9.18286 -8.53684 -8.51998 -7.55681 -7.40958 -6.04991 -4.02869 3.33049 3.39968 3.44159 3.70765 4.22658 4.46254 4.58965 4.74705 4.83758 4.89076 5.09043 5.16830 5.30456 5.37133 5.39029 5.49260 5.55210 5.61154 5.63257 5.70607 5.77785 5.83521 5.86291 5.90351 5.93698 5.99151 6.07169 6.13718 6.20458 6.30278 6.31664 6.45458 6.75146 6.81500 7.00075 7.22447 7.30684 7.33362 7.47651 7.75781 7.79000 8.00699 8.34969 8.50827 8.97076 9.58196 11.08124 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.028940 B = 0.004821 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.275518 B = 5806.523744 C = 6092.030037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.095 3.905 3 H 0.030 0.970 4 C -0.015 4.015 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.069 3.931 8 N -0.903 5.903 9 Si 0.882 3.118 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.266 1.266 13 N -0.666 5.666 14 C 0.066 3.934 15 C 0.085 3.915 16 H 0.081 0.919 17 C 0.043 3.957 18 N -0.573 5.573 19 C 0.041 3.959 20 C 0.033 3.967 21 N -0.547 5.547 22 C 0.086 3.914 23 C -0.192 4.192 24 C 0.083 3.917 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.018 0.982 29 H 0.021 0.979 30 H 0.262 0.738 31 H 0.359 0.641 32 H 0.029 0.971 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.073 0.329 16.497 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.015 4.015 3 H 0.048 0.952 4 C -0.053 4.053 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.133 4.133 8 N -0.542 5.542 9 Si 0.709 3.291 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.300 5.300 14 C -0.065 4.065 15 C -0.026 4.026 16 H 0.099 0.901 17 C -0.088 4.088 18 N -0.295 5.295 19 C -0.088 4.088 20 C -0.097 4.097 21 N -0.268 5.268 22 C -0.042 4.042 23 C -0.233 4.233 24 C -0.045 4.045 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.181 0.819 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.379 0.092 16.508 19.500 hybrid contribution 0.118 0.083 -1.026 1.036 sum -10.261 0.175 15.482 18.574 Atomic orbital electron populations 1.21809 0.96918 1.01188 0.99375 1.21387 0.93045 0.95863 0.91168 0.95161 1.19745 0.96952 0.95957 0.92634 1.21068 0.89899 1.35149 1.09729 0.91352 1.25000 0.94663 0.95718 0.97872 1.69917 1.06583 1.45350 1.32312 0.86749 0.80356 0.80609 0.81359 1.20245 1.21601 1.19107 1.60491 1.35333 1.31000 1.03192 1.22109 0.99044 0.93955 0.91376 1.21538 0.97680 0.89007 0.94402 0.90125 1.22481 0.98528 0.97354 0.90438 1.57621 1.04282 1.22451 1.45166 1.22445 1.00191 0.88277 0.97888 1.22707 1.01750 0.96233 0.88963 1.56948 1.05748 1.25089 1.39004 1.21461 0.85824 1.02830 0.94062 1.23099 1.01198 0.99432 0.99549 1.21178 0.85855 0.97261 1.00198 0.93551 0.92684 0.94531 0.96338 0.96086 0.92785 0.81922 0.95290 0.92298 0.90592 0.91053 0.90829 0.91149 0.91179 0.90802 0.90809 0.91557 0.91055 0.90915 0.92013 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.41 37.16 0.35 -1.93 16 2 C 0.10 1.90 2.59 -67.72 -0.18 1.72 16 3 H 0.03 0.64 7.80 -51.93 -0.40 0.23 16 4 C -0.02 -0.36 3.64 -27.88 -0.10 -0.46 16 5 C -0.52 -14.45 8.67 -34.44 -0.30 -14.75 16 6 H 0.07 2.03 7.73 -52.49 -0.41 1.63 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 9 Si 0.88 21.88 27.47 -169.99 -4.67 17.22 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 N -0.67 -12.41 5.82 -106.73 -0.62 -13.03 16 14 C 0.07 1.02 3.98 -3.82 -0.02 1.01 16 15 C 0.08 1.17 2.69 -69.33 -0.19 0.99 16 16 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 17 C 0.04 0.51 5.75 -4.81 -0.03 0.49 16 18 N -0.57 -6.55 4.37 -239.25 -1.05 -7.60 16 19 C 0.04 0.43 5.51 -3.89 -0.02 0.41 16 20 C 0.03 0.38 5.72 -3.62 -0.02 0.35 16 21 N -0.55 -7.44 3.89 -230.82 -0.90 -8.34 16 22 C 0.09 1.10 5.41 -5.18 -0.03 1.07 16 23 C -0.19 -1.98 5.75 -26.97 -0.16 -2.13 16 24 C 0.08 0.88 5.74 -5.79 -0.03 0.85 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.04 0.55 7.45 -51.93 -0.39 0.17 16 28 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 29 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.36 7.69 7.21 -39.29 -0.28 7.41 16 32 H 0.03 0.48 8.06 -51.93 -0.42 0.06 16 33 H 0.06 0.88 5.81 -51.93 -0.30 0.58 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.85 7.26 -51.93 -0.38 0.47 16 36 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 37 H 0.07 0.66 7.90 -51.93 -0.41 0.25 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.80 6.20 -51.93 -0.32 0.48 16 40 H 0.07 1.03 5.64 -51.93 -0.29 0.74 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.73 5.29 -51.93 -0.27 0.45 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 LS Contribution 326.94 15.07 4.93 4.93 Total: -1.00 -29.04 326.94 -10.36 -39.40 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -8.01 Total: 4.75 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -0.81 Total: -10.51 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -1.79 Total: -55.78 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.04 -10.36 -39.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695792088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.500 kcal (2) G-P(sol) polarization free energy of solvation -29.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds