Wall clock time and date at job start Mon Mar 30 2020 05:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47474 * 2 1 4 4 C 1.53006 * 109.47102 * 119.99963 * 2 1 3 5 5 C 1.50698 * 109.47184 * 184.99536 * 4 2 1 6 6 H 1.08005 * 119.99819 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00046 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47261 * 60.00310 * 9 7 5 12 12 H 1.48500 * 109.47454 * 300.00304 * 9 7 5 13 13 N 1.46895 * 109.47068 * 240.00226 * 2 1 3 14 14 C 1.46894 * 111.00510 * 85.00059 * 13 2 1 15 15 C 1.53001 * 109.47532 * 180.02562 * 14 13 2 16 16 H 1.08996 * 109.10355 * 65.86777 * 15 14 13 17 17 C 1.53508 * 109.11511 * 184.99970 * 15 14 13 18 18 N 1.44572 * 109.41910 * 125.08954 * 17 15 14 19 19 C 1.46929 * 110.58474 * 55.50279 * 18 17 15 20 20 C 1.52846 * 109.52339 * 294.66123 * 19 18 17 21 21 N 1.43339 * 109.11295 * 306.79157 * 15 14 13 22 22 C 1.44129 * 119.24732 * 313.65561 * 21 15 14 23 23 C 1.53255 * 110.21608 * 262.09638 * 22 21 15 24 24 C 1.43888 * 117.17380 * 281.62692 * 18 17 15 25 25 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46822 * 300.00115 * 1 2 3 27 27 H 1.09002 * 109.46922 * 59.99402 * 1 2 3 28 28 H 1.09001 * 109.47002 * 65.00132 * 4 2 1 29 29 H 1.08993 * 109.46955 * 304.99694 * 4 2 1 30 30 H 0.97001 * 119.99934 * 359.97438 * 8 7 5 31 31 H 1.00902 * 111.00018 * 208.95930 * 13 2 1 32 32 H 1.09005 * 109.46899 * 300.00430 * 14 13 2 33 33 H 1.09003 * 109.47228 * 59.99627 * 14 13 2 34 34 H 1.09001 * 109.48064 * 245.07134 * 17 15 14 35 35 H 1.09002 * 109.48007 * 5.09779 * 17 15 14 36 36 H 1.09000 * 109.45657 * 54.68363 * 19 18 17 37 37 H 1.09002 * 109.45963 * 174.64205 * 19 18 17 38 38 H 1.09007 * 109.40050 * 132.68198 * 20 19 18 39 39 H 1.08994 * 109.40250 * 252.43038 * 20 19 18 40 40 H 1.09003 * 109.34918 * 22.31737 * 22 21 15 41 41 H 1.08996 * 109.34787 * 142.01845 * 22 21 15 42 42 H 1.08999 * 110.01610 * 180.89515 * 23 22 21 43 43 H 1.08996 * 110.01242 * 302.23194 * 23 22 21 44 44 H 1.09003 * 108.80377 * 217.71244 * 24 18 17 45 45 H 1.09004 * 108.80123 * 335.96761 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0856 0.5395 7 6 4.2303 -1.1928 2.3583 8 7 3.5763 -1.8370 3.3001 9 14 6.0919 -1.0605 2.4373 10 1 6.5870 -1.7606 3.6498 11 1 6.4844 0.3705 2.4966 12 1 6.6845 -1.6866 1.2282 13 7 2.0196 -0.6924 -1.1994 14 6 2.0824 0.2226 -2.3469 15 6 2.5950 -0.5332 -3.5745 16 1 1.8623 -1.2878 -3.8604 17 6 2.7765 0.4561 -4.7342 18 7 4.1303 0.3678 -5.2338 19 6 4.4504 -1.0140 -5.6172 20 6 4.4418 -1.9039 -4.3746 21 7 3.8304 -1.1811 -3.2448 22 6 4.8474 -0.4414 -2.5406 23 6 5.8915 0.0936 -3.5266 24 6 5.1558 1.0320 -4.4739 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.7516 -1.7715 1.2056 29 1 1.6054 -0.2617 2.1369 30 1 2.6096 -1.9054 3.2593 31 1 2.9172 -1.1205 -1.0287 32 1 1.0870 0.6164 -2.5525 33 1 2.7588 1.0462 -2.1182 34 1 2.0773 0.2111 -5.5337 35 1 2.5846 1.4693 -4.3811 36 1 3.7069 -1.3751 -6.3278 37 1 5.4376 -1.0435 -6.0783 38 1 3.8673 -2.8072 -4.5800 39 1 5.4652 -2.1776 -4.1182 40 1 4.3867 0.3944 -2.0139 41 1 5.3368 -1.0967 -1.8201 42 1 6.6674 0.6388 -2.9890 43 1 6.3343 -0.7311 -4.0850 44 1 5.8765 1.4704 -5.1643 45 1 4.6989 1.8321 -3.8914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695792090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:53 Heat of formation + Delta-G solvation = 19.133904 kcal Electronic energy + Delta-G solvation = -22445.066987 eV Core-core repulsion = 19497.318861 eV Total energy + Delta-G solvation = -2947.748126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.21335 -36.78866 -34.37232 -33.68376 -32.67518 -31.71643 -29.31763 -27.05908 -26.14518 -25.61891 -24.21753 -22.91761 -22.13185 -20.18307 -19.59117 -18.49174 -17.19390 -16.69949 -16.51570 -15.84313 -14.91645 -14.53303 -14.10688 -13.95577 -13.69872 -13.39137 -13.09479 -12.91852 -12.68899 -12.57960 -12.10587 -12.00149 -11.81205 -11.61889 -11.32104 -11.25113 -11.22657 -10.97092 -10.89805 -10.70424 -10.51064 -10.35392 -10.21803 -10.10768 -9.45840 -8.55819 -8.51900 -8.32470 -7.59094 -7.47580 -6.34596 -4.03473 3.41382 3.43210 3.61681 3.69287 4.19403 4.54018 4.58470 4.73664 4.84788 4.90130 5.08262 5.25335 5.33224 5.38085 5.44910 5.48459 5.53155 5.60864 5.66934 5.68433 5.78039 5.81862 5.87429 5.91049 5.94950 5.98964 6.08219 6.15705 6.25777 6.28870 6.34375 6.48129 6.83431 6.86623 6.98479 7.28280 7.34427 7.39689 7.46386 7.70865 8.02457 8.19285 8.42805 8.45413 8.89459 9.68410 11.06036 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.006814 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.812797 B = 4108.229472 C = 5154.053110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.093 3.907 3 H 0.025 0.975 4 C 0.007 3.993 5 C -0.598 4.598 6 H 0.044 0.956 7 C 0.018 3.982 8 N -0.911 5.911 9 Si 1.063 2.937 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.287 1.287 13 N -0.675 5.675 14 C 0.066 3.934 15 C 0.085 3.915 16 H 0.086 0.914 17 C 0.043 3.957 18 N -0.573 5.573 19 C 0.042 3.958 20 C 0.035 3.965 21 N -0.560 5.560 22 C 0.068 3.932 23 C -0.188 4.188 24 C 0.082 3.918 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.037 0.963 28 H 0.016 0.984 29 H 0.010 0.990 30 H 0.270 0.730 31 H 0.366 0.634 32 H 0.066 0.934 33 H 0.018 0.982 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.221 3.798 -17.304 17.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.017 4.017 3 H 0.043 0.957 4 C -0.030 4.030 5 C -0.637 4.637 6 H 0.062 0.938 7 C -0.186 4.186 8 N -0.547 5.547 9 Si 0.892 3.108 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.214 1.214 13 N -0.311 5.311 14 C -0.065 4.065 15 C -0.025 4.025 16 H 0.104 0.896 17 C -0.088 4.088 18 N -0.295 5.295 19 C -0.087 4.087 20 C -0.094 4.094 21 N -0.282 5.282 22 C -0.060 4.060 23 C -0.228 4.228 24 C -0.046 4.046 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.028 0.972 30 H 0.080 0.920 31 H 0.189 0.811 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.788 3.100 -16.597 16.978 hybrid contribution -0.318 1.246 -0.473 1.370 sum 1.470 4.346 -17.069 17.675 Atomic orbital electron populations 1.21806 0.96877 1.01246 0.99408 1.21454 0.93164 0.95580 0.91498 0.95717 1.19389 0.96548 0.95556 0.91482 1.21936 0.91852 1.38517 1.11346 0.93806 1.25735 1.06592 0.93528 0.92750 1.70763 1.10471 1.39567 1.33922 0.83627 0.74809 0.76118 0.76261 1.20773 1.21666 1.21359 1.60497 1.36022 1.31113 1.03504 1.22108 0.99020 0.93755 0.91604 1.21561 0.90504 0.95890 0.94588 0.89567 1.22487 0.88960 1.00263 0.97087 1.57640 1.02375 1.18413 1.51060 1.22436 1.01761 0.87096 0.97395 1.22674 1.00081 0.96959 0.89690 1.57128 1.05950 1.36990 1.28106 1.21692 0.90951 0.97787 0.95549 1.23018 0.99789 1.00707 0.99316 1.21197 0.93008 0.95980 0.94396 0.92691 0.93559 0.94407 0.96543 0.97202 0.91992 0.81060 0.91548 0.96388 0.90618 0.91105 0.90835 0.91018 0.91084 0.90553 0.91082 0.90465 0.90655 0.90674 0.91798 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.41 37.16 0.35 -2.14 16 2 C 0.09 1.98 2.59 -67.71 -0.18 1.81 16 3 H 0.02 0.55 7.80 -51.93 -0.40 0.15 16 4 C 0.01 0.19 3.88 -27.88 -0.11 0.08 16 5 C -0.60 -16.64 8.12 -34.44 -0.28 -16.92 16 6 H 0.04 1.19 7.49 -52.48 -0.39 0.80 16 7 C 0.02 0.52 5.46 -17.82 -0.10 0.43 16 8 N -0.91 -27.97 13.65 55.43 0.76 -27.21 16 9 Si 1.06 25.21 29.90 -169.99 -5.08 20.13 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.68 -13.40 6.29 -106.73 -0.67 -14.07 16 14 C 0.07 1.06 4.10 -3.83 -0.02 1.05 16 15 C 0.09 1.20 2.76 -69.34 -0.19 1.01 16 16 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 17 C 0.04 0.51 5.75 -4.81 -0.03 0.49 16 18 N -0.57 -6.81 4.37 -239.24 -1.05 -7.86 16 19 C 0.04 0.45 5.51 -3.89 -0.02 0.43 16 20 C 0.03 0.42 5.71 -3.63 -0.02 0.40 16 21 N -0.56 -8.24 3.51 -230.82 -0.81 -9.05 16 22 C 0.07 1.04 4.58 -5.17 -0.02 1.02 16 23 C -0.19 -2.32 5.75 -26.96 -0.16 -2.47 16 24 C 0.08 0.97 5.74 -5.79 -0.03 0.94 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.61 7.45 -51.93 -0.39 0.23 16 28 H 0.02 0.45 8.01 -51.93 -0.42 0.04 16 29 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 30 H 0.27 8.29 7.22 -40.82 -0.29 8.00 16 31 H 0.37 8.07 5.40 -39.29 -0.21 7.86 16 32 H 0.07 1.01 7.44 -51.93 -0.39 0.62 16 33 H 0.02 0.31 6.43 -51.93 -0.33 -0.02 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.86 7.26 -51.93 -0.38 0.48 16 36 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 37 H 0.07 0.70 7.90 -51.93 -0.41 0.29 16 38 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.08 0.90 6.21 -51.93 -0.32 0.58 16 40 H 0.07 1.22 5.61 -51.93 -0.29 0.93 16 41 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.87 5.30 -51.93 -0.28 0.59 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.79 7.64 -51.93 -0.40 0.39 16 LS Contribution 326.84 15.07 4.93 4.93 Total: -1.00 -29.53 326.84 -10.65 -40.17 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.92 Total: 6.85 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -0.80 Total: -13.88 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -1.77 Total: -58.20 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.53 -10.65 -40.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695792090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.308 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds