Wall clock time and date at job start Mon Mar 30 2020 05:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47474 * 2 1 4 4 C 1.53006 * 109.47102 * 119.99963 * 2 1 3 5 5 C 1.50698 * 109.47184 * 184.99536 * 4 2 1 6 6 H 1.08005 * 119.99819 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00046 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47261 * 60.00310 * 9 7 5 12 12 H 1.48500 * 109.47454 * 300.00304 * 9 7 5 13 13 N 1.46895 * 109.47068 * 240.00226 * 2 1 3 14 14 C 1.46894 * 111.00510 * 85.00059 * 13 2 1 15 15 C 1.53001 * 109.47532 * 180.02562 * 14 13 2 16 16 H 1.08996 * 109.10355 * 65.86777 * 15 14 13 17 17 C 1.53508 * 109.11511 * 184.99970 * 15 14 13 18 18 N 1.44572 * 109.41910 * 125.08954 * 17 15 14 19 19 C 1.46929 * 110.58474 * 55.50279 * 18 17 15 20 20 C 1.52846 * 109.52339 * 294.66123 * 19 18 17 21 21 N 1.43339 * 109.11295 * 306.79157 * 15 14 13 22 22 C 1.44129 * 119.24732 * 313.65561 * 21 15 14 23 23 C 1.53255 * 110.21608 * 262.09638 * 22 21 15 24 24 C 1.43888 * 117.17380 * 281.62692 * 18 17 15 25 25 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46822 * 300.00115 * 1 2 3 27 27 H 1.09002 * 109.46922 * 59.99402 * 1 2 3 28 28 H 1.09001 * 109.47002 * 65.00132 * 4 2 1 29 29 H 1.08993 * 109.46955 * 304.99694 * 4 2 1 30 30 H 0.97001 * 119.99934 * 359.97438 * 8 7 5 31 31 H 1.00902 * 111.00018 * 208.95930 * 13 2 1 32 32 H 1.09005 * 109.46899 * 300.00430 * 14 13 2 33 33 H 1.09003 * 109.47228 * 59.99627 * 14 13 2 34 34 H 1.09001 * 109.48064 * 245.07134 * 17 15 14 35 35 H 1.09002 * 109.48007 * 5.09779 * 17 15 14 36 36 H 1.09000 * 109.45657 * 54.68363 * 19 18 17 37 37 H 1.09002 * 109.45963 * 174.64205 * 19 18 17 38 38 H 1.09007 * 109.40050 * 132.68198 * 20 19 18 39 39 H 1.08994 * 109.40250 * 252.43038 * 20 19 18 40 40 H 1.09003 * 109.34918 * 22.31737 * 22 21 15 41 41 H 1.08996 * 109.34787 * 142.01845 * 22 21 15 42 42 H 1.08999 * 110.01610 * 180.89515 * 23 22 21 43 43 H 1.08996 * 110.01242 * 302.23194 * 23 22 21 44 44 H 1.09003 * 108.80377 * 217.71244 * 24 18 17 45 45 H 1.09004 * 108.80123 * 335.96761 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0856 0.5395 7 6 4.2303 -1.1928 2.3583 8 7 3.5763 -1.8370 3.3001 9 14 6.0919 -1.0605 2.4373 10 1 6.5870 -1.7606 3.6498 11 1 6.4844 0.3705 2.4966 12 1 6.6845 -1.6866 1.2282 13 7 2.0196 -0.6924 -1.1994 14 6 2.0824 0.2226 -2.3469 15 6 2.5950 -0.5332 -3.5745 16 1 1.8623 -1.2878 -3.8604 17 6 2.7765 0.4561 -4.7342 18 7 4.1303 0.3678 -5.2338 19 6 4.4504 -1.0140 -5.6172 20 6 4.4418 -1.9039 -4.3746 21 7 3.8304 -1.1811 -3.2448 22 6 4.8474 -0.4414 -2.5406 23 6 5.8915 0.0936 -3.5266 24 6 5.1558 1.0320 -4.4739 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.7516 -1.7715 1.2056 29 1 1.6054 -0.2617 2.1369 30 1 2.6096 -1.9054 3.2593 31 1 2.9172 -1.1205 -1.0287 32 1 1.0870 0.6164 -2.5525 33 1 2.7588 1.0462 -2.1182 34 1 2.0773 0.2111 -5.5337 35 1 2.5846 1.4693 -4.3811 36 1 3.7069 -1.3751 -6.3278 37 1 5.4376 -1.0435 -6.0783 38 1 3.8673 -2.8072 -4.5800 39 1 5.4652 -2.1776 -4.1182 40 1 4.3867 0.3944 -2.0139 41 1 5.3368 -1.0967 -1.8201 42 1 6.6674 0.6388 -2.9890 43 1 6.3343 -0.7311 -4.0850 44 1 5.8765 1.4704 -5.1643 45 1 4.6989 1.8321 -3.8914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695792090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:52 Heat of formation + Delta-G solvation = -1.722808 kcal Electronic energy + Delta-G solvation = -22445.971401 eV Core-core repulsion = 19497.318861 eV Total energy + Delta-G solvation = -2948.652541 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.25088 -38.41386 -35.73591 -35.01109 -34.30251 -32.91450 -30.73095 -28.97595 -27.32605 -26.66469 -25.51167 -24.81510 -23.34284 -21.36164 -21.17145 -19.59986 -18.90367 -18.20203 -17.59274 -17.07807 -16.20007 -16.09919 -15.66742 -15.24996 -15.21360 -14.87286 -14.46729 -14.14558 -13.84956 -13.77269 -13.47198 -13.25746 -13.10790 -13.06237 -12.98387 -12.72487 -12.56481 -12.52169 -12.31227 -12.18892 -11.99602 -11.78398 -11.54143 -11.41376 -11.23656 -10.65408 -10.55711 -9.57714 -9.19732 -8.67504 -8.50635 -6.36853 1.47761 1.56213 1.74629 2.54143 2.69603 3.12988 3.18870 3.38010 3.64604 3.82708 3.88723 4.04463 4.13457 4.15418 4.21815 4.33079 4.39797 4.44723 4.50389 4.56058 4.64353 4.65004 4.69401 4.77966 4.84431 4.87339 4.91549 4.94531 5.02368 5.04384 5.05742 5.12745 5.13770 5.15819 5.28582 5.42468 5.96388 6.03419 6.17423 6.28288 6.34884 6.44174 6.56748 6.61529 6.70722 7.43923 8.73194 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.006814 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.812797 B = 4108.229472 C = 5154.053110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.099 3.901 3 H 0.015 0.985 4 C 0.012 3.988 5 C -0.601 4.601 6 H 0.046 0.954 7 C -0.035 4.035 8 N -0.938 5.938 9 Si 1.110 2.890 10 H -0.285 1.285 11 H -0.271 1.271 12 H -0.267 1.267 13 N -0.678 5.678 14 C 0.069 3.931 15 C 0.093 3.907 16 H 0.084 0.916 17 C 0.050 3.950 18 N -0.574 5.574 19 C 0.048 3.952 20 C 0.035 3.965 21 N -0.581 5.581 22 C 0.075 3.925 23 C -0.178 4.178 24 C 0.084 3.916 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.064 0.936 28 H -0.009 1.009 29 H -0.011 1.011 30 H 0.255 0.745 31 H 0.351 0.649 32 H 0.081 0.919 33 H 0.008 0.992 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.048 0.952 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.005 4.533 -19.866 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.011 4.011 3 H 0.033 0.967 4 C -0.025 4.025 5 C -0.639 4.639 6 H 0.064 0.936 7 C -0.233 4.233 8 N -0.576 5.576 9 Si 0.931 3.069 10 H -0.210 1.210 11 H -0.197 1.197 12 H -0.192 1.192 13 N -0.312 5.312 14 C -0.061 4.061 15 C -0.018 4.018 16 H 0.102 0.898 17 C -0.081 4.081 18 N -0.296 5.296 19 C -0.081 4.081 20 C -0.093 4.093 21 N -0.304 5.304 22 C -0.053 4.053 23 C -0.219 4.219 24 C -0.044 4.044 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.009 0.991 29 H 0.008 0.992 30 H 0.064 0.936 31 H 0.172 0.828 32 H 0.099 0.901 33 H 0.026 0.974 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.543 3.851 -19.194 19.741 hybrid contribution -0.612 0.999 0.330 1.217 sum 1.932 4.851 -18.865 19.574 Atomic orbital electron populations 1.21707 0.94258 1.01436 1.01028 1.21315 0.95218 0.94239 0.90287 0.96657 1.19298 0.95834 0.94309 0.93092 1.22239 0.92952 1.37672 1.11014 0.93582 1.27258 1.10942 0.92725 0.92352 1.70904 1.09664 1.41669 1.35314 0.83036 0.69685 0.77280 0.76852 1.21047 1.19654 1.19203 1.60559 1.35002 1.31851 1.03781 1.22194 0.99740 0.93105 0.91066 1.21492 0.90041 0.96084 0.94176 0.89815 1.22437 0.89656 0.99415 0.96571 1.57752 1.02190 1.19037 1.50580 1.22459 1.03090 0.85922 0.96643 1.22738 0.99951 0.97078 0.89563 1.57046 1.06242 1.37459 1.29616 1.21488 0.91680 0.96256 0.95883 1.22951 0.98994 1.01168 0.98751 1.21195 0.93238 0.95498 0.94446 0.93186 0.93041 0.91681 0.99114 0.99247 0.93597 0.82776 0.90115 0.97377 0.88824 0.91232 0.89593 0.89532 0.90894 0.90443 0.93507 0.93410 0.90177 0.89493 0.90170 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 9.41 71.98 0.68 -3.87 16 2 C 0.10 4.30 2.59 44.92 0.12 4.41 16 3 H 0.02 0.69 7.80 -2.39 -0.02 0.67 16 4 C 0.01 0.64 3.88 29.85 0.12 0.76 16 5 C -0.60 -34.22 8.12 25.60 0.21 -34.02 16 6 H 0.05 2.56 7.49 -2.91 -0.02 2.54 16 7 C -0.04 -2.05 5.46 84.65 0.46 -1.59 16 8 N -0.94 -59.19 13.65 21.45 0.29 -58.89 16 9 Si 1.11 50.86 29.90 68.60 2.05 52.91 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 13 N -0.68 -27.01 6.29 -491.58 -3.09 -30.11 16 14 C 0.07 2.17 4.10 86.30 0.35 2.52 16 15 C 0.09 2.47 2.76 45.75 0.13 2.59 16 16 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 17 C 0.05 1.07 5.75 86.91 0.50 1.57 16 18 N -0.57 -11.96 4.37 -910.83 -3.98 -15.95 16 19 C 0.05 0.86 5.51 86.25 0.47 1.34 16 20 C 0.04 0.78 5.71 86.16 0.49 1.27 16 21 N -0.58 -16.60 3.51 -884.18 -3.11 -19.71 16 22 C 0.07 2.29 4.58 86.91 0.40 2.69 16 23 C -0.18 -4.09 5.75 30.45 0.18 -3.91 16 24 C 0.08 1.79 5.74 86.63 0.50 2.29 16 25 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.06 1.98 7.45 -2.39 -0.02 1.96 16 28 H -0.01 -0.55 8.01 -2.39 -0.02 -0.57 16 29 H -0.01 -0.61 8.01 -2.39 -0.02 -0.63 16 30 H 0.25 16.37 7.22 -92.71 -0.67 15.70 16 31 H 0.35 15.84 5.40 -89.69 -0.48 15.35 16 32 H 0.08 2.30 7.44 -2.38 -0.02 2.28 16 33 H 0.01 0.28 6.43 -2.39 -0.02 0.26 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.53 7.26 -2.39 -0.02 1.51 16 36 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 37 H 0.09 1.36 7.90 -2.39 -0.02 1.34 16 38 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.08 1.69 6.21 -2.39 -0.01 1.68 16 40 H 0.05 1.63 5.61 -2.39 -0.01 1.62 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 43 H 0.09 1.80 5.30 -2.39 -0.01 1.79 16 44 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.05 1.22 7.64 -2.38 -0.02 1.20 16 Total: -1.00 -64.78 326.84 -2.67 -67.46 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.57 Total: 28.23 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 4.60 Total: -23.95 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -9.89 Total: -124.66 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.05 Total: 52.91 kcal Total: -64.78 -2.67 -67.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695792090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.735 kcal (2) G-P(sol) polarization free energy of solvation -64.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds