Wall clock time and date at job start Mon Mar 30 2020 05:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47174 * 2 1 4 4 C 1.52998 * 109.47114 * 239.99522 * 2 1 3 5 5 C 1.50711 * 109.46753 * 175.00051 * 4 2 1 6 6 H 1.07996 * 119.99943 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99635 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00296 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99921 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47234 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47344 * 119.99521 * 9 7 5 12 12 H 1.48498 * 109.47320 * 239.99971 * 9 7 5 13 13 N 1.46902 * 109.46946 * 119.99483 * 2 1 3 14 14 C 1.46953 * 111.00101 * 295.00256 * 13 2 1 15 15 C 1.53048 * 109.36590 * 183.18843 * 14 13 2 16 16 N 1.46956 * 109.36625 * 301.59882 * 15 14 13 17 17 C 1.46897 * 110.99891 * 183.18685 * 16 15 14 18 18 H 1.09002 * 110.76944 * 298.24891 * 17 16 15 19 19 C 1.55141 * 110.70341 * 175.05532 * 17 16 15 20 20 C 1.54906 * 101.65274 * 205.96440 * 19 17 16 21 21 N 1.47846 * 104.79743 * 37.06883 * 20 19 17 22 22 C 1.47440 * 108.56252 * 335.90442 * 21 20 19 23 23 C 1.46953 * 110.87881 * 59.31866 * 16 15 14 24 24 C 1.46956 * 111.00201 * 58.80221 * 13 2 1 25 25 H 1.09006 * 109.47252 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47420 * 300.00583 * 1 2 3 27 27 H 1.08995 * 109.46963 * 60.00614 * 1 2 3 28 28 H 1.08996 * 109.47215 * 294.99706 * 4 2 1 29 29 H 1.08999 * 109.47309 * 55.00618 * 4 2 1 30 30 H 0.96999 * 119.99596 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.48982 * 63.22114 * 14 13 2 32 32 H 1.09004 * 109.48658 * 303.15381 * 14 13 2 33 33 H 1.09003 * 109.49085 * 181.62890 * 15 14 13 34 34 H 1.09008 * 109.50780 * 61.57618 * 15 14 13 35 35 H 1.09007 * 110.99330 * 324.05530 * 19 17 16 36 36 H 1.09001 * 110.99588 * 87.86675 * 19 17 16 37 37 H 1.08997 * 110.37274 * 278.23810 * 20 19 17 38 38 H 1.09004 * 110.37092 * 155.89866 * 20 19 17 39 39 H 1.00901 * 110.99770 * 213.64006 * 21 20 19 40 40 H 1.09007 * 109.88586 * 120.39843 * 22 21 20 41 41 H 1.09003 * 109.88838 * 241.42037 * 22 21 20 42 42 H 1.09003 * 109.49263 * 60.65058 * 23 16 15 43 43 H 1.08997 * 109.49218 * 180.71273 * 23 16 15 44 44 H 1.09003 * 109.48619 * 296.77861 * 24 13 2 45 45 H 1.08999 * 109.48438 * 56.81743 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3126 6 1 4.0789 -0.0855 -0.5395 7 6 4.2304 -1.1928 -2.3581 8 7 3.5765 -1.8372 -3.2998 9 14 6.0921 -1.0616 -2.4364 10 1 6.5838 -0.2920 -1.2654 11 1 6.6855 -2.4227 -2.4192 12 1 6.4872 -0.3651 -3.6870 13 7 2.0196 -0.6924 1.1995 14 6 1.6485 0.0396 2.4185 15 6 2.2434 -0.6696 3.6373 16 7 1.7489 -2.0526 3.6859 17 6 2.2386 -2.7450 4.8854 18 1 3.3270 -2.8029 4.8809 19 6 1.6144 -4.1611 4.9945 20 6 1.6763 -4.4135 6.5216 21 7 1.3877 -3.0989 7.1336 22 6 1.7347 -2.0436 6.1642 23 6 2.1201 -2.7846 2.4669 24 6 1.5251 -2.0754 1.2481 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.7517 -1.7716 -1.2054 29 1 1.6055 -0.2619 -2.1369 30 1 4.0609 -2.2439 -4.0352 31 1 0.5626 0.0687 2.5089 32 1 2.0366 1.0567 2.3643 33 1 1.9452 -0.1448 4.5450 34 1 3.3308 -0.6747 3.5607 35 1 0.5836 -4.1619 4.6401 36 1 2.2123 -4.8942 4.4530 37 1 2.6701 -4.7561 6.8096 38 1 0.9221 -5.1431 6.8165 39 1 1.8995 -2.9810 7.9951 40 1 0.8526 -1.4452 5.9359 41 1 2.5187 -1.4067 6.5741 42 1 3.2060 -2.8138 2.3765 43 1 1.7320 -3.8017 2.5210 44 1 0.4378 -2.0703 1.3251 45 1 1.8229 -2.6001 0.3402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695844037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:27 Heat of formation + Delta-G solvation = 15.113047 kcal Electronic energy + Delta-G solvation = -21646.595756 eV Core-core repulsion = 18698.673273 eV Total energy + Delta-G solvation = -2947.922483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.69388 -38.10058 -35.45191 -32.75934 -31.10816 -30.64659 -29.45873 -28.02768 -27.27586 -24.88525 -23.53596 -22.84045 -21.13161 -20.62920 -19.90450 -18.55857 -16.91302 -16.52927 -16.14546 -15.14084 -14.61873 -14.51977 -14.38601 -14.11701 -14.01037 -13.57802 -12.99681 -12.87646 -12.68226 -12.65502 -12.05982 -12.01978 -11.73184 -11.53202 -11.34185 -11.28950 -11.10119 -10.92798 -10.85533 -10.58320 -10.50225 -10.32399 -10.15115 -9.84371 -9.13176 -8.95915 -8.66363 -8.26663 -8.21213 -7.42755 -5.89609 -3.87311 3.36521 3.44174 3.49569 3.85307 4.13235 4.44649 4.54614 4.59364 4.70506 4.99889 5.12485 5.16859 5.32569 5.43888 5.45238 5.47280 5.56550 5.65866 5.71979 5.78442 5.81773 5.84892 5.88101 5.92077 6.00970 6.03539 6.06861 6.13680 6.26455 6.42164 6.50069 6.61963 6.66298 6.74814 7.00229 7.10226 7.19939 7.22611 7.56481 7.70865 7.93359 8.04159 8.12853 8.58033 9.19190 9.74519 11.22338 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.023257 B = 0.004718 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.653559 B = 5933.003072 C = 6459.273715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.028 3.972 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.513 5.513 14 C 0.054 3.946 15 C 0.058 3.942 16 N -0.527 5.527 17 C 0.062 3.938 18 H 0.045 0.955 19 C -0.121 4.121 20 C 0.046 3.954 21 N -0.683 5.683 22 C 0.055 3.945 23 C 0.059 3.941 24 C 0.058 3.942 25 H 0.052 0.948 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.020 0.980 29 H 0.018 0.982 30 H 0.257 0.743 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.336 0.664 40 H 0.086 0.914 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.033 0.967 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.369 -2.030 17.785 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.087 0.913 4 C -0.009 4.009 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.236 5.236 14 C -0.075 4.075 15 C -0.070 4.070 16 N -0.252 5.252 17 C -0.048 4.048 18 H 0.063 0.937 19 C -0.160 4.160 20 C -0.083 4.083 21 N -0.312 5.312 22 C -0.075 4.075 23 C -0.069 4.069 24 C -0.070 4.070 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.152 0.848 40 H 0.105 0.895 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.051 0.949 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.023 -2.115 17.483 18.312 hybrid contribution 2.111 -0.002 -0.127 2.114 sum -2.912 -2.117 17.355 17.725 Atomic orbital electron populations 1.22504 0.99711 1.01346 1.00643 1.21896 0.90117 0.98357 0.91732 0.91302 1.19234 0.96341 0.95372 0.89940 1.21217 0.91829 1.32832 1.06900 0.92161 1.25001 0.97936 0.95929 0.95999 1.69976 1.35075 1.37023 1.12368 0.86596 0.86553 0.77521 0.77663 1.19865 1.21366 1.21368 1.62286 1.58897 1.01426 1.01033 1.22124 0.97987 0.97243 0.90118 1.22159 0.97942 0.88802 0.98072 1.62288 1.59108 1.02286 1.01513 1.22839 0.96617 0.94300 0.91044 0.93718 1.22766 1.02587 0.95371 0.95249 1.22806 0.99435 0.91960 0.94134 1.61874 1.60863 1.02067 1.06403 1.22649 1.00165 0.93947 0.90727 1.22195 0.99006 0.96857 0.88818 1.22159 0.96706 0.90420 0.97714 0.92902 0.94001 0.92659 0.96203 0.96340 0.93386 0.94624 0.91028 0.91063 0.94219 0.89538 0.90974 0.94115 0.90259 0.84841 0.89544 0.93437 0.93969 0.90904 0.94878 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.49 37.16 0.32 -2.89 16 2 C 0.09 1.77 2.30 -67.71 -0.16 1.62 16 3 H 0.07 1.44 8.11 -51.93 -0.42 1.02 16 4 C 0.03 0.71 4.27 -27.88 -0.12 0.59 16 5 C -0.49 -13.65 8.84 -34.44 -0.30 -13.95 16 6 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 9 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 13 N -0.51 -9.76 4.41 -226.50 -1.00 -10.76 16 14 C 0.05 0.85 5.25 -3.77 -0.02 0.83 16 15 C 0.06 0.82 5.41 -3.77 -0.02 0.80 16 16 N -0.53 -7.35 4.53 -224.32 -1.02 -8.36 16 17 C 0.06 0.73 2.64 -65.89 -0.17 0.56 16 18 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 19 C -0.12 -1.30 5.41 -24.59 -0.13 -1.43 16 20 C 0.05 0.42 7.57 -2.30 -0.02 0.41 16 21 N -0.68 -6.73 7.39 -110.79 -0.82 -7.55 16 22 C 0.05 0.58 6.11 -2.84 -0.02 0.56 16 23 C 0.06 0.92 5.43 -3.77 -0.02 0.90 16 24 C 0.06 1.05 4.82 -3.77 -0.02 1.03 16 25 H 0.05 0.93 6.45 -51.93 -0.34 0.60 16 26 H 0.04 0.66 6.59 -51.93 -0.34 0.32 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.02 0.53 6.11 -51.93 -0.32 0.21 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.04 0.56 6.60 -51.93 -0.34 0.22 16 32 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 33 H 0.07 0.86 6.89 -51.93 -0.36 0.50 16 34 H 0.04 0.61 8.14 -51.92 -0.42 0.18 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.73 8.01 -51.93 -0.42 0.31 16 37 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.34 2.67 8.91 -39.29 -0.35 2.32 16 40 H 0.09 1.03 7.68 -51.93 -0.40 0.63 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.03 6.99 -51.93 -0.36 0.66 16 44 H 0.03 0.59 6.46 -51.93 -0.34 0.25 16 45 H 0.09 1.96 6.07 -51.93 -0.32 1.64 16 LS Contribution 334.79 15.07 5.05 5.05 Total: -1.00 -29.72 334.79 -10.92 -40.64 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.06 Total: -0.03 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -0.78 Total: -9.61 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -2.10 Total: -53.05 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.72 -10.92 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695844037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.751 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds