Wall clock time and date at job start Mon Mar 30 2020 05:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47174 * 2 1 4 4 C 1.52998 * 109.47114 * 239.99522 * 2 1 3 5 5 C 1.50711 * 109.46753 * 175.00051 * 4 2 1 6 6 H 1.07996 * 119.99943 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99635 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00296 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99921 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47234 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47344 * 119.99521 * 9 7 5 12 12 H 1.48498 * 109.47320 * 239.99971 * 9 7 5 13 13 N 1.46902 * 109.46946 * 119.99483 * 2 1 3 14 14 C 1.46953 * 111.00101 * 295.00256 * 13 2 1 15 15 C 1.53048 * 109.36590 * 183.18843 * 14 13 2 16 16 N 1.46956 * 109.36625 * 301.59882 * 15 14 13 17 17 C 1.46897 * 110.99891 * 183.18685 * 16 15 14 18 18 H 1.09002 * 110.76944 * 298.24891 * 17 16 15 19 19 C 1.55141 * 110.70341 * 175.05532 * 17 16 15 20 20 C 1.54906 * 101.65274 * 205.96440 * 19 17 16 21 21 N 1.47846 * 104.79743 * 37.06883 * 20 19 17 22 22 C 1.47440 * 108.56252 * 335.90442 * 21 20 19 23 23 C 1.46953 * 110.87881 * 59.31866 * 16 15 14 24 24 C 1.46956 * 111.00201 * 58.80221 * 13 2 1 25 25 H 1.09006 * 109.47252 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47420 * 300.00583 * 1 2 3 27 27 H 1.08995 * 109.46963 * 60.00614 * 1 2 3 28 28 H 1.08996 * 109.47215 * 294.99706 * 4 2 1 29 29 H 1.08999 * 109.47309 * 55.00618 * 4 2 1 30 30 H 0.96999 * 119.99596 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.48982 * 63.22114 * 14 13 2 32 32 H 1.09004 * 109.48658 * 303.15381 * 14 13 2 33 33 H 1.09003 * 109.49085 * 181.62890 * 15 14 13 34 34 H 1.09008 * 109.50780 * 61.57618 * 15 14 13 35 35 H 1.09007 * 110.99330 * 324.05530 * 19 17 16 36 36 H 1.09001 * 110.99588 * 87.86675 * 19 17 16 37 37 H 1.08997 * 110.37274 * 278.23810 * 20 19 17 38 38 H 1.09004 * 110.37092 * 155.89866 * 20 19 17 39 39 H 1.00901 * 110.99770 * 213.64006 * 21 20 19 40 40 H 1.09007 * 109.88586 * 120.39843 * 22 21 20 41 41 H 1.09003 * 109.88838 * 241.42037 * 22 21 20 42 42 H 1.09003 * 109.49263 * 60.65058 * 23 16 15 43 43 H 1.08997 * 109.49218 * 180.71273 * 23 16 15 44 44 H 1.09003 * 109.48619 * 296.77861 * 24 13 2 45 45 H 1.08999 * 109.48438 * 56.81743 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3126 6 1 4.0789 -0.0855 -0.5395 7 6 4.2304 -1.1928 -2.3581 8 7 3.5765 -1.8372 -3.2998 9 14 6.0921 -1.0616 -2.4364 10 1 6.5838 -0.2920 -1.2654 11 1 6.6855 -2.4227 -2.4192 12 1 6.4872 -0.3651 -3.6870 13 7 2.0196 -0.6924 1.1995 14 6 1.6485 0.0396 2.4185 15 6 2.2434 -0.6696 3.6373 16 7 1.7489 -2.0526 3.6859 17 6 2.2386 -2.7450 4.8854 18 1 3.3270 -2.8029 4.8809 19 6 1.6144 -4.1611 4.9945 20 6 1.6763 -4.4135 6.5216 21 7 1.3877 -3.0989 7.1336 22 6 1.7347 -2.0436 6.1642 23 6 2.1201 -2.7846 2.4669 24 6 1.5251 -2.0754 1.2481 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.7517 -1.7716 -1.2054 29 1 1.6055 -0.2619 -2.1369 30 1 4.0609 -2.2439 -4.0352 31 1 0.5626 0.0687 2.5089 32 1 2.0366 1.0567 2.3643 33 1 1.9452 -0.1448 4.5450 34 1 3.3308 -0.6747 3.5607 35 1 0.5836 -4.1619 4.6401 36 1 2.2123 -4.8942 4.4530 37 1 2.6701 -4.7561 6.8096 38 1 0.9221 -5.1431 6.8165 39 1 1.8995 -2.9810 7.9951 40 1 0.8526 -1.4452 5.9359 41 1 2.5187 -1.4067 6.5741 42 1 3.2060 -2.8138 2.3765 43 1 1.7320 -3.8017 2.5210 44 1 0.4378 -2.0703 1.3251 45 1 1.8229 -2.6001 0.3402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695844037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:27 Heat of formation + Delta-G solvation = -7.005210 kcal Electronic energy + Delta-G solvation = -21647.554876 eV Core-core repulsion = 18698.673273 eV Total energy + Delta-G solvation = -2948.881603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85962 -39.26102 -36.74096 -34.77289 -32.54736 -31.96138 -30.41669 -29.31130 -28.91944 -26.18368 -25.15629 -24.43233 -22.10530 -21.75506 -21.10268 -20.03393 -18.35847 -17.74699 -17.61666 -16.55035 -16.49995 -15.78477 -15.57400 -15.53861 -15.20037 -14.64203 -14.61548 -14.06634 -13.86041 -13.70014 -13.56782 -13.44977 -13.24658 -12.96900 -12.73211 -12.61650 -12.48908 -12.36821 -12.24818 -12.04359 -11.90009 -11.82746 -11.58252 -11.38162 -11.08151 -10.92694 -10.48415 -9.46860 -9.30151 -8.90472 -8.10785 -6.15456 1.39264 1.40437 1.53163 2.46090 2.80540 3.11510 3.26902 3.33336 3.57069 3.88825 3.98630 4.10581 4.11845 4.27887 4.35731 4.38758 4.39335 4.46215 4.46725 4.48988 4.59851 4.66014 4.69272 4.85552 4.91049 4.95156 4.99014 4.99823 5.03000 5.09375 5.12514 5.19781 5.22188 5.32088 5.50057 5.70304 5.86558 5.89839 6.00547 6.11693 6.33328 6.44259 6.48817 6.54257 6.98470 7.50433 9.01383 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.023257 B = 0.004718 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.653559 B = 5933.003072 C = 6459.273715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.095 3.905 3 H 0.065 0.935 4 C 0.035 3.965 5 C -0.498 4.498 6 H 0.055 0.945 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.954 3.046 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.281 1.281 13 N -0.532 5.532 14 C 0.056 3.944 15 C 0.063 3.937 16 N -0.526 5.526 17 C 0.059 3.941 18 H 0.041 0.959 19 C -0.121 4.121 20 C 0.050 3.950 21 N -0.690 5.690 22 C 0.061 3.939 23 C 0.069 3.931 24 C 0.065 3.935 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.056 0.944 28 H -0.001 1.001 29 H -0.009 1.009 30 H 0.258 0.742 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.349 0.651 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.023 0.977 43 H 0.087 0.913 44 H 0.038 0.962 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.069 -1.736 20.106 20.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.014 4.014 3 H 0.083 0.917 4 C -0.002 4.002 5 C -0.536 4.536 6 H 0.074 0.926 7 C -0.199 4.199 8 N -0.581 5.581 9 Si 0.781 3.219 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.256 5.256 14 C -0.072 4.072 15 C -0.065 4.065 16 N -0.251 5.251 17 C -0.050 4.050 18 H 0.059 0.941 19 C -0.159 4.159 20 C -0.079 4.079 21 N -0.321 5.321 22 C -0.068 4.068 23 C -0.059 4.059 24 C -0.063 4.063 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.017 0.983 29 H 0.010 0.990 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.045 0.955 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.165 0.835 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.041 0.959 43 H 0.105 0.895 44 H 0.056 0.944 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.724 -1.814 19.832 20.467 hybrid contribution 1.991 -0.103 -0.831 2.160 sum -2.733 -1.917 19.001 19.292 Atomic orbital electron populations 1.22355 0.97287 1.01472 1.01919 1.21606 0.92004 0.97277 0.90480 0.91699 1.19080 0.95194 0.94462 0.91470 1.21495 0.93247 1.32312 1.06576 0.92638 1.25818 1.02694 0.95673 0.95727 1.70099 1.36945 1.38027 1.13057 0.85551 0.80869 0.77616 0.77888 1.19153 1.20940 1.20728 1.62192 1.59702 1.01986 1.01771 1.22192 0.98533 0.97412 0.89096 1.22154 0.97010 0.89007 0.98318 1.62300 1.59068 1.02285 1.01462 1.22917 0.96438 0.95057 0.90598 0.94134 1.22754 1.01769 0.94782 0.96624 1.22803 1.00468 0.91867 0.92759 1.61843 1.61388 1.02044 1.06797 1.22541 0.99973 0.94120 0.90193 1.22029 0.97539 0.97513 0.88805 1.22005 0.96993 0.89990 0.97346 0.93324 0.91558 0.92479 0.98287 0.99034 0.93273 0.93939 0.90316 0.88352 0.95518 0.90676 0.90618 0.92818 0.89536 0.83462 0.90631 0.92088 0.95916 0.89484 0.94366 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.89 8.49 71.98 0.61 -5.27 16 2 C 0.09 3.89 2.30 44.91 0.10 4.00 16 3 H 0.06 2.70 8.11 -2.39 -0.02 2.69 16 4 C 0.04 1.83 4.27 29.85 0.13 1.96 16 5 C -0.50 -28.40 8.84 25.60 0.23 -28.17 16 6 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 7 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 8 N -0.94 -57.69 13.29 21.45 0.28 -57.40 16 9 Si 0.95 45.66 29.54 68.60 2.03 47.69 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 N -0.53 -20.22 4.41 -870.50 -3.84 -24.06 16 14 C 0.06 1.67 5.25 86.31 0.45 2.12 16 15 C 0.06 1.66 5.41 86.31 0.47 2.12 16 16 N -0.53 -13.88 4.53 -863.61 -3.91 -17.79 16 17 C 0.06 1.30 2.64 46.09 0.12 1.42 16 18 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 19 C -0.12 -2.37 5.41 31.98 0.17 -2.20 16 20 C 0.05 0.80 7.57 86.77 0.66 1.45 16 21 N -0.69 -11.74 7.39 -504.44 -3.73 -15.47 16 22 C 0.06 1.15 6.11 86.64 0.53 1.67 16 23 C 0.07 2.15 5.43 86.31 0.47 2.61 16 24 C 0.06 2.38 4.82 86.31 0.42 2.80 16 25 H 0.05 1.70 6.45 -2.38 -0.02 1.68 16 26 H 0.07 1.95 6.59 -2.39 -0.02 1.94 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.00 -0.06 6.11 -2.39 -0.01 -0.08 16 29 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 30 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.04 1.23 6.60 -2.39 -0.02 1.21 16 32 H 0.08 2.24 8.12 -2.38 -0.02 2.22 16 33 H 0.10 2.07 6.89 -2.39 -0.02 2.06 16 34 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.08 1.41 8.01 -2.39 -0.02 1.39 16 37 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.35 4.50 8.91 -89.69 -0.80 3.70 16 40 H 0.08 1.61 7.68 -2.38 -0.02 1.59 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.09 2.41 6.99 -2.39 -0.02 2.39 16 44 H 0.04 1.35 6.46 -2.39 -0.02 1.33 16 45 H 0.06 2.53 6.07 -2.39 -0.01 2.51 16 Total: -1.00 -64.29 334.79 -4.21 -68.50 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.15 Total: 13.74 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 4.82 Total: -15.20 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -11.20 Total: -114.73 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -64.29 -4.21 -68.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695844037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.495 kcal (2) G-P(sol) polarization free energy of solvation -64.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds