Wall clock time and date at job start Mon Mar 30 2020 05:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46932 * 2 1 4 4 C 1.53005 * 109.47253 * 239.99648 * 2 1 3 5 5 C 1.50690 * 109.47089 * 175.00032 * 4 2 1 6 6 H 1.08007 * 120.00300 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00100 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99844 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00024 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47407 * 59.99485 * 9 7 5 11 11 H 1.48495 * 109.47067 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46941 * 299.99679 * 9 7 5 13 13 N 1.46906 * 109.46816 * 119.99941 * 2 1 3 14 14 C 1.46958 * 110.99597 * 294.99995 * 13 2 1 15 15 C 1.53049 * 109.36045 * 183.18883 * 14 13 2 16 16 N 1.46954 * 109.36888 * 301.60061 * 15 14 13 17 17 C 1.46893 * 111.00319 * 183.18867 * 16 15 14 18 18 H 1.08998 * 110.76849 * 296.88086 * 17 16 15 19 19 C 1.55402 * 110.84622 * 60.14240 * 17 16 15 20 20 C 1.54910 * 101.74130 * 153.86210 * 19 17 16 21 21 N 1.47846 * 104.79773 * 323.01998 * 20 19 17 22 22 C 1.47446 * 108.56552 * 24.09721 * 21 20 19 23 23 C 1.46954 * 110.88055 * 59.31820 * 16 15 14 24 24 C 1.46958 * 111.00002 * 58.79903 * 13 2 1 25 25 H 1.09000 * 109.46932 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47594 * 300.00175 * 1 2 3 27 27 H 1.08997 * 109.46844 * 60.00365 * 1 2 3 28 28 H 1.09002 * 109.46880 * 295.00461 * 4 2 1 29 29 H 1.08999 * 109.46913 * 55.00001 * 4 2 1 30 30 H 0.96999 * 119.99913 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.48925 * 63.22570 * 14 13 2 32 32 H 1.08997 * 109.48711 * 303.15442 * 14 13 2 33 33 H 1.09004 * 109.48882 * 181.62964 * 15 14 13 34 34 H 1.09009 * 109.49030 * 61.56867 * 15 14 13 35 35 H 1.09000 * 110.87201 * 35.77716 * 19 17 16 36 36 H 1.08995 * 111.02484 * 272.01850 * 19 17 16 37 37 H 1.08998 * 110.37228 * 204.19177 * 20 19 17 38 38 H 1.09005 * 110.46701 * 81.89797 * 20 19 17 39 39 H 1.00896 * 111.00002 * 146.35869 * 21 20 19 40 40 H 1.08998 * 109.88736 * 118.41499 * 22 21 20 41 41 H 1.09000 * 109.88760 * 239.44146 * 22 21 20 42 42 H 1.08994 * 109.49124 * 60.65018 * 23 16 15 43 43 H 1.09000 * 109.49275 * 180.72039 * 23 16 15 44 44 H 1.08997 * 109.49104 * 296.77683 * 24 13 2 45 45 H 1.08998 * 109.48711 * 56.84628 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0855 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 3.5764 -1.8362 -3.3004 9 14 6.0921 -1.0615 -2.4365 10 1 6.6839 -1.6884 -1.2273 11 1 6.5872 -1.7615 -3.6489 12 1 6.4855 0.3693 -2.4951 13 7 2.0196 -0.6925 1.1995 14 6 1.6484 0.0395 2.4185 15 6 2.2433 -0.6698 3.6373 16 7 1.7489 -2.0528 3.6858 17 6 2.2385 -2.7452 4.8852 18 1 3.3255 -2.8245 4.8691 19 6 1.7601 -2.0224 6.1750 20 6 1.7570 -3.1812 7.2031 21 7 1.2984 -4.3616 6.4401 22 6 1.5915 -4.1405 5.0121 23 6 2.1200 -2.7848 2.4667 24 6 1.5251 -2.0755 1.2479 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7516 -1.7716 -1.2055 29 1 1.6054 -0.2619 -2.1370 30 1 4.0608 -2.2430 -4.0358 31 1 0.5626 0.0686 2.5088 32 1 2.0366 1.0566 2.3643 33 1 1.9452 -0.1450 4.5449 34 1 3.3307 -0.6749 3.5603 35 1 0.7578 -1.6150 6.0429 36 1 2.4617 -1.2417 6.4688 37 1 1.0661 -2.9640 8.0176 38 1 2.7614 -3.3478 7.5926 39 1 1.7433 -5.2033 6.7743 40 1 2.2820 -4.9035 4.6528 41 1 0.6679 -4.1748 4.4344 42 1 3.2058 -2.8139 2.3764 43 1 1.7319 -3.8019 2.5208 44 1 0.4378 -2.0705 1.3250 45 1 1.8232 -2.6003 0.3403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695844039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:31 Heat of formation + Delta-G solvation = 15.119924 kcal Electronic energy + Delta-G solvation = -21644.368801 eV Core-core repulsion = 18696.446616 eV Total energy + Delta-G solvation = -2947.922185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.68224 -38.09062 -35.45037 -32.75362 -30.99136 -30.82947 -29.32279 -28.12012 -27.25565 -24.85956 -23.52332 -22.87373 -21.10800 -20.63400 -19.91426 -18.54747 -16.90330 -16.54337 -16.14489 -15.05205 -14.67000 -14.50030 -14.40763 -14.23875 -13.93303 -13.53223 -13.00602 -12.89123 -12.68387 -12.65538 -12.06368 -11.89295 -11.74871 -11.60117 -11.35977 -11.32218 -11.07274 -10.94887 -10.81621 -10.60248 -10.51327 -10.32970 -10.14183 -9.83871 -9.12916 -8.97912 -8.64942 -8.25730 -8.21012 -7.42719 -5.89039 -3.86879 3.39570 3.43516 3.46936 3.85572 4.13859 4.43697 4.54748 4.59409 4.69204 4.99533 5.13416 5.17270 5.31672 5.44676 5.45651 5.48014 5.56427 5.65507 5.69566 5.76525 5.81860 5.84096 5.87961 5.94149 6.00280 6.04015 6.05631 6.14150 6.26143 6.42231 6.50024 6.64098 6.65926 6.75042 7.00362 7.11310 7.20730 7.22469 7.56663 7.70960 7.93360 8.04303 8.13164 8.58393 9.18945 9.74742 11.22856 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.023202 B = 0.004712 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.492744 B = 5940.677333 C = 6449.464834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.029 3.971 5 C -0.491 4.491 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.513 5.513 14 C 0.054 3.946 15 C 0.060 3.940 16 N -0.527 5.527 17 C 0.062 3.938 18 H 0.045 0.955 19 C -0.121 4.121 20 C 0.046 3.954 21 N -0.683 5.683 22 C 0.054 3.946 23 C 0.057 3.943 24 C 0.058 3.942 25 H 0.052 0.948 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.020 0.980 29 H 0.018 0.982 30 H 0.258 0.742 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.040 0.960 39 H 0.337 0.663 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.033 0.967 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 -1.596 17.996 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.087 0.913 4 C -0.008 4.008 5 C -0.530 4.530 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.236 5.236 14 C -0.075 4.075 15 C -0.068 4.068 16 N -0.252 5.252 17 C -0.048 4.048 18 H 0.063 0.937 19 C -0.159 4.159 20 C -0.083 4.083 21 N -0.312 5.312 22 C -0.076 4.076 23 C -0.071 4.071 24 C -0.070 4.070 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.152 0.848 40 H 0.067 0.933 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.052 0.948 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.975 -1.499 17.784 18.528 hybrid contribution 2.110 -0.118 -0.170 2.120 sum -2.865 -1.617 17.614 17.919 Atomic orbital electron populations 1.22504 0.99710 1.01357 1.00633 1.21900 0.90119 0.98349 0.91741 0.91313 1.19219 0.96291 0.95363 0.89925 1.21135 0.91833 1.33045 1.06950 0.92288 1.24995 0.97914 0.95906 0.95977 1.69949 1.35275 1.36905 1.12309 0.86709 0.86482 0.78008 0.77023 1.20521 1.21634 1.20495 1.62291 1.58893 1.01429 1.01030 1.22129 0.97979 0.97241 0.90143 1.22136 0.97909 0.88703 0.98034 1.62273 1.59133 1.02339 1.01446 1.22877 0.96565 0.94344 0.90997 0.93717 1.22804 1.02697 0.97100 0.93334 1.22795 0.98413 0.90364 0.96751 1.61877 1.61585 1.04889 1.02834 1.22652 1.00521 0.94860 0.89533 1.22217 0.99038 0.96863 0.88938 1.22155 0.96711 0.90408 0.97703 0.92887 0.94010 0.92664 0.96211 0.96355 0.93261 0.94646 0.91043 0.91053 0.94239 0.89622 0.91158 0.90326 0.94147 0.84784 0.93291 0.89422 0.93947 0.90914 0.94848 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.49 37.16 0.32 -2.89 16 2 C 0.09 1.77 2.30 -67.71 -0.16 1.62 16 3 H 0.07 1.44 8.11 -51.93 -0.42 1.01 16 4 C 0.03 0.73 4.27 -27.89 -0.12 0.61 16 5 C -0.49 -13.71 8.84 -34.44 -0.30 -14.01 16 6 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 9 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.51 -9.77 4.41 -226.48 -1.00 -10.77 16 14 C 0.05 0.85 5.25 -3.77 -0.02 0.83 16 15 C 0.06 0.85 5.42 -3.77 -0.02 0.83 16 16 N -0.53 -7.36 4.53 -224.15 -1.02 -8.37 16 17 C 0.06 0.74 2.65 -65.75 -0.17 0.56 16 18 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 19 C -0.12 -1.23 5.38 -24.45 -0.13 -1.36 16 20 C 0.05 0.42 7.58 -2.30 -0.02 0.40 16 21 N -0.68 -6.88 7.39 -110.78 -0.82 -7.70 16 22 C 0.05 0.60 6.12 -2.83 -0.02 0.58 16 23 C 0.06 0.90 5.42 -3.77 -0.02 0.87 16 24 C 0.06 1.06 4.82 -3.77 -0.02 1.04 16 25 H 0.05 0.93 6.46 -51.93 -0.34 0.60 16 26 H 0.04 0.66 6.59 -51.93 -0.34 0.31 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.02 0.53 6.12 -51.93 -0.32 0.21 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 31 H 0.04 0.56 6.60 -51.93 -0.34 0.22 16 32 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 33 H 0.07 0.86 6.97 -51.93 -0.36 0.50 16 34 H 0.04 0.61 8.14 -51.92 -0.42 0.18 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.65 8.02 -51.93 -0.42 0.23 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.34 2.78 8.91 -39.29 -0.35 2.43 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 1.11 7.73 -51.93 -0.40 0.71 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 1.02 6.95 -51.93 -0.36 0.66 16 44 H 0.03 0.59 6.47 -51.93 -0.34 0.26 16 45 H 0.09 1.96 6.07 -51.93 -0.32 1.65 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -29.67 334.92 -10.92 -40.59 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.07 Total: 0.08 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -0.78 Total: -9.54 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -2.10 Total: -53.22 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.67 -10.92 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695844039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.712 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds