Wall clock time and date at job start Mon Mar 30 2020 05:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46932 * 2 1 4 4 C 1.53005 * 109.47253 * 239.99648 * 2 1 3 5 5 C 1.50690 * 109.47089 * 175.00032 * 4 2 1 6 6 H 1.08007 * 120.00300 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00100 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99844 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00024 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47407 * 59.99485 * 9 7 5 11 11 H 1.48495 * 109.47067 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46941 * 299.99679 * 9 7 5 13 13 N 1.46906 * 109.46816 * 119.99941 * 2 1 3 14 14 C 1.46958 * 110.99597 * 294.99995 * 13 2 1 15 15 C 1.53049 * 109.36045 * 183.18883 * 14 13 2 16 16 N 1.46954 * 109.36888 * 301.60061 * 15 14 13 17 17 C 1.46893 * 111.00319 * 183.18867 * 16 15 14 18 18 H 1.08998 * 110.76849 * 296.88086 * 17 16 15 19 19 C 1.55402 * 110.84622 * 60.14240 * 17 16 15 20 20 C 1.54910 * 101.74130 * 153.86210 * 19 17 16 21 21 N 1.47846 * 104.79773 * 323.01998 * 20 19 17 22 22 C 1.47446 * 108.56552 * 24.09721 * 21 20 19 23 23 C 1.46954 * 110.88055 * 59.31820 * 16 15 14 24 24 C 1.46958 * 111.00002 * 58.79903 * 13 2 1 25 25 H 1.09000 * 109.46932 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47594 * 300.00175 * 1 2 3 27 27 H 1.08997 * 109.46844 * 60.00365 * 1 2 3 28 28 H 1.09002 * 109.46880 * 295.00461 * 4 2 1 29 29 H 1.08999 * 109.46913 * 55.00001 * 4 2 1 30 30 H 0.96999 * 119.99913 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.48925 * 63.22570 * 14 13 2 32 32 H 1.08997 * 109.48711 * 303.15442 * 14 13 2 33 33 H 1.09004 * 109.48882 * 181.62964 * 15 14 13 34 34 H 1.09009 * 109.49030 * 61.56867 * 15 14 13 35 35 H 1.09000 * 110.87201 * 35.77716 * 19 17 16 36 36 H 1.08995 * 111.02484 * 272.01850 * 19 17 16 37 37 H 1.08998 * 110.37228 * 204.19177 * 20 19 17 38 38 H 1.09005 * 110.46701 * 81.89797 * 20 19 17 39 39 H 1.00896 * 111.00002 * 146.35869 * 21 20 19 40 40 H 1.08998 * 109.88736 * 118.41499 * 22 21 20 41 41 H 1.09000 * 109.88760 * 239.44146 * 22 21 20 42 42 H 1.08994 * 109.49124 * 60.65018 * 23 16 15 43 43 H 1.09000 * 109.49275 * 180.72039 * 23 16 15 44 44 H 1.08997 * 109.49104 * 296.77683 * 24 13 2 45 45 H 1.08998 * 109.48711 * 56.84628 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0855 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 3.5764 -1.8362 -3.3004 9 14 6.0921 -1.0615 -2.4365 10 1 6.6839 -1.6884 -1.2273 11 1 6.5872 -1.7615 -3.6489 12 1 6.4855 0.3693 -2.4951 13 7 2.0196 -0.6925 1.1995 14 6 1.6484 0.0395 2.4185 15 6 2.2433 -0.6698 3.6373 16 7 1.7489 -2.0528 3.6858 17 6 2.2385 -2.7452 4.8852 18 1 3.3255 -2.8245 4.8691 19 6 1.7601 -2.0224 6.1750 20 6 1.7570 -3.1812 7.2031 21 7 1.2984 -4.3616 6.4401 22 6 1.5915 -4.1405 5.0121 23 6 2.1200 -2.7848 2.4667 24 6 1.5251 -2.0755 1.2479 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7516 -1.7716 -1.2055 29 1 1.6054 -0.2619 -2.1370 30 1 4.0608 -2.2430 -4.0358 31 1 0.5626 0.0686 2.5088 32 1 2.0366 1.0566 2.3643 33 1 1.9452 -0.1450 4.5449 34 1 3.3307 -0.6749 3.5603 35 1 0.7578 -1.6150 6.0429 36 1 2.4617 -1.2417 6.4688 37 1 1.0661 -2.9640 8.0176 38 1 2.7614 -3.3478 7.5926 39 1 1.7433 -5.2033 6.7743 40 1 2.2820 -4.9035 4.6528 41 1 0.6679 -4.1748 4.4344 42 1 3.2058 -2.8139 2.3764 43 1 1.7319 -3.8019 2.5208 44 1 0.4378 -2.0705 1.3250 45 1 1.8232 -2.6003 0.3403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695844039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:30 Heat of formation + Delta-G solvation = -6.971287 kcal Electronic energy + Delta-G solvation = -21645.326748 eV Core-core repulsion = 18696.446616 eV Total energy + Delta-G solvation = -2948.880132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.85239 -39.25005 -36.74115 -34.77098 -32.49763 -32.05387 -30.26397 -29.45313 -28.88966 -26.16764 -25.10033 -24.50517 -22.01857 -21.81873 -21.10868 -20.02623 -18.34889 -17.75238 -17.63149 -16.56214 -16.42917 -15.80563 -15.64399 -15.52556 -15.17063 -14.70279 -14.51096 -14.09079 -13.89405 -13.69925 -13.55949 -13.44052 -13.17384 -12.98093 -12.72639 -12.61147 -12.52973 -12.43074 -12.20024 -12.02831 -11.91666 -11.81117 -11.57476 -11.38141 -11.10405 -10.92510 -10.47318 -9.47393 -9.30443 -8.90496 -8.10287 -6.15125 1.40364 1.42565 1.50235 2.46307 2.80171 3.11582 3.27145 3.33966 3.55803 3.89086 3.97885 4.10729 4.11723 4.28322 4.35467 4.39107 4.39602 4.44112 4.47613 4.49803 4.59882 4.66355 4.68504 4.85828 4.91715 4.95156 4.99514 5.00242 5.01958 5.09853 5.12430 5.20685 5.22340 5.32142 5.49997 5.70282 5.86700 5.89853 6.00678 6.11479 6.33397 6.44073 6.47162 6.54279 6.98308 7.50581 9.01518 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.023202 B = 0.004712 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.492744 B = 5940.677333 C = 6449.464834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.095 3.905 3 H 0.065 0.935 4 C 0.036 3.964 5 C -0.500 4.500 6 H 0.055 0.945 7 C -0.002 4.002 8 N -0.939 5.939 9 Si 0.955 3.045 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.532 5.532 14 C 0.056 3.944 15 C 0.065 3.935 16 N -0.526 5.526 17 C 0.059 3.941 18 H 0.040 0.960 19 C -0.116 4.116 20 C 0.048 3.952 21 N -0.690 5.690 22 C 0.058 3.942 23 C 0.067 3.933 24 C 0.065 3.935 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.056 0.944 28 H -0.001 1.001 29 H -0.009 1.009 30 H 0.259 0.741 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.026 0.974 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.348 0.652 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.022 0.978 43 H 0.086 0.914 44 H 0.039 0.961 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 -1.104 20.420 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.014 4.014 3 H 0.083 0.917 4 C -0.001 4.001 5 C -0.539 4.539 6 H 0.074 0.926 7 C -0.199 4.199 8 N -0.581 5.581 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.256 5.256 14 C -0.073 4.073 15 C -0.063 4.063 16 N -0.251 5.251 17 C -0.050 4.050 18 H 0.058 0.942 19 C -0.154 4.154 20 C -0.081 4.081 21 N -0.321 5.321 22 C -0.072 4.072 23 C -0.061 4.061 24 C -0.063 4.063 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.017 0.983 29 H 0.009 0.991 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.044 0.956 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.164 0.836 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.041 0.959 43 H 0.105 0.895 44 H 0.057 0.943 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.660 -1.001 20.237 20.791 hybrid contribution 1.983 -0.283 -0.899 2.196 sum -2.677 -1.284 19.338 19.565 Atomic orbital electron populations 1.22355 0.97290 1.01472 1.01917 1.21610 0.92002 0.97273 0.90477 0.91684 1.19068 0.95165 0.94443 0.91466 1.21436 0.93258 1.32525 1.06654 0.92638 1.25817 1.02698 0.95640 0.95696 1.70080 1.37108 1.37926 1.12976 0.85661 0.80784 0.78379 0.77105 1.19987 1.21230 1.19490 1.62196 1.59696 1.01973 1.01783 1.22199 0.98530 0.97419 0.89104 1.22133 0.96972 0.88875 0.98305 1.62286 1.59089 1.02350 1.01373 1.22951 0.96334 0.94972 0.90751 0.94158 1.22787 1.02423 0.97726 0.92464 1.22838 0.99471 0.89312 0.96452 1.61849 1.62107 1.05903 1.02225 1.22536 0.99705 0.94636 0.90308 1.22051 0.97548 0.97519 0.88961 1.21998 0.96998 0.89995 0.97315 0.93331 0.91544 0.92488 0.98321 0.99058 0.93253 0.93956 0.90294 0.88286 0.95551 0.90402 0.89842 0.89360 0.92804 0.83578 0.92816 0.91029 0.95920 0.89542 0.94333 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.89 8.49 71.98 0.61 -5.28 16 2 C 0.09 3.90 2.30 44.92 0.10 4.00 16 3 H 0.06 2.71 8.11 -2.39 -0.02 2.69 16 4 C 0.04 1.87 4.27 29.85 0.13 2.00 16 5 C -0.50 -28.55 8.84 25.60 0.23 -28.33 16 6 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -57.76 13.29 21.45 0.28 -57.47 16 9 Si 0.95 45.65 29.54 68.60 2.03 47.68 16 10 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 N -0.53 -20.22 4.41 -870.45 -3.84 -24.06 16 14 C 0.06 1.66 5.25 86.31 0.45 2.11 16 15 C 0.07 1.70 5.42 86.31 0.47 2.17 16 16 N -0.53 -13.90 4.53 -863.07 -3.91 -17.81 16 17 C 0.06 1.30 2.65 46.19 0.12 1.42 16 18 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 19 C -0.12 -2.03 5.38 32.07 0.17 -1.86 16 20 C 0.05 0.73 7.58 86.77 0.66 1.39 16 21 N -0.69 -12.34 7.39 -504.41 -3.73 -16.07 16 22 C 0.06 1.20 6.12 86.65 0.53 1.73 16 23 C 0.07 2.10 5.42 86.31 0.47 2.56 16 24 C 0.07 2.40 4.82 86.31 0.42 2.81 16 25 H 0.05 1.70 6.46 -2.39 -0.02 1.68 16 26 H 0.07 1.95 6.59 -2.39 -0.02 1.94 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 28 H 0.00 -0.08 6.12 -2.39 -0.01 -0.09 16 29 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.04 1.22 6.60 -2.39 -0.02 1.21 16 32 H 0.08 2.24 8.12 -2.39 -0.02 2.22 16 33 H 0.10 2.07 6.97 -2.38 -0.02 2.05 16 34 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.25 8.02 -2.39 -0.02 1.23 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.35 4.93 8.91 -89.70 -0.80 4.13 16 40 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.73 7.73 -2.39 -0.02 1.71 16 42 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.09 2.41 6.95 -2.39 -0.02 2.40 16 44 H 0.04 1.36 6.47 -2.39 -0.02 1.35 16 45 H 0.06 2.53 6.07 -2.39 -0.01 2.52 16 Total: -1.00 -64.34 334.92 -4.20 -68.55 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.15 Total: 14.13 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 4.82 Total: -14.94 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -11.20 Total: -115.42 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -64.34 -4.20 -68.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695844039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.574 kcal (2) G-P(sol) polarization free energy of solvation -64.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds