Wall clock time and date at job start Mon Mar 30 2020 05:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.47377 * 2 1 4 4 C 1.52999 * 109.47701 * 120.00103 * 2 1 3 5 5 C 1.50709 * 109.47015 * 296.84908 * 4 2 1 6 6 H 1.07999 * 119.99800 * 355.52415 * 5 4 2 7 7 C 1.37865 * 120.00267 * 175.52387 * 5 4 2 8 8 N 1.31517 * 120.00299 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00182 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47310 * 59.99827 * 9 7 5 11 11 H 1.48507 * 109.47188 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47052 * 299.99508 * 9 7 5 13 13 N 1.46900 * 109.47361 * 240.00202 * 2 1 3 14 14 C 1.46957 * 110.99897 * 61.89153 * 13 2 1 15 15 C 1.53054 * 109.36626 * 183.18943 * 14 13 2 16 16 N 1.46959 * 109.36374 * 301.60346 * 15 14 13 17 17 C 1.46894 * 110.99993 * 183.18394 * 16 15 14 18 18 H 1.09002 * 110.77019 * 297.71768 * 17 16 15 19 19 C 1.55404 * 110.84792 * 60.97850 * 17 16 15 20 20 C 1.54904 * 101.74386 * 153.86109 * 19 17 16 21 21 N 1.47839 * 104.79700 * 323.02190 * 20 19 17 22 22 C 1.47446 * 108.56943 * 24.09610 * 21 20 19 23 23 C 1.46957 * 110.88366 * 59.31676 * 16 15 14 24 24 C 1.46951 * 111.00356 * 185.69435 * 13 2 1 25 25 H 1.08995 * 109.47226 * 60.00161 * 1 2 3 26 26 H 1.09007 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47175 * 299.99346 * 1 2 3 28 28 H 1.08997 * 109.47244 * 56.84452 * 4 2 1 29 29 H 1.08996 * 109.47717 * 176.85106 * 4 2 1 30 30 H 0.96994 * 120.00749 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.48683 * 63.22406 * 14 13 2 32 32 H 1.08995 * 109.48899 * 303.15682 * 14 13 2 33 33 H 1.08994 * 109.49040 * 181.63298 * 15 14 13 34 34 H 1.09006 * 109.48411 * 61.56114 * 15 14 13 35 35 H 1.09000 * 110.86710 * 35.77286 * 19 17 16 36 36 H 1.09000 * 111.02389 * 272.02219 * 19 17 16 37 37 H 1.09000 * 110.36961 * 204.18795 * 20 19 17 38 38 H 1.09001 * 110.46548 * 81.90090 * 20 19 17 39 39 H 1.00903 * 111.00171 * 146.36564 * 21 20 19 40 40 H 1.08993 * 109.88832 * 118.41680 * 22 21 20 41 41 H 1.09000 * 109.88727 * 239.44762 * 22 21 20 42 42 H 1.09000 * 109.48683 * 60.64711 * 23 16 15 43 43 H 1.08995 * 109.48899 * 180.71435 * 23 16 15 44 44 H 1.09009 * 109.48775 * 296.77601 * 24 13 2 45 45 H 1.09002 * 109.49205 * 56.84166 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6025 0.0328 2.4785 6 1 1.0817 0.9736 2.3780 7 6 1.8671 -0.4782 3.7313 8 7 2.5009 -1.6241 3.8537 9 14 1.3242 0.4561 5.2550 10 1 -0.1520 0.6166 5.2375 11 1 1.7250 -0.3002 6.4685 12 1 1.9675 1.7945 5.2704 13 7 2.0196 -0.6924 -1.1994 14 6 1.5858 -0.0004 -2.4211 15 6 2.0473 -0.7945 -3.6454 16 7 3.5100 -0.9331 -3.6132 17 6 3.9997 -1.6256 -4.8126 18 1 3.5994 -2.6381 -4.8648 19 6 3.6419 -0.8272 -6.0970 20 6 4.7527 -1.2870 -7.0737 21 7 5.9622 -1.4207 -6.2341 22 6 5.5425 -1.6468 -4.8388 23 6 3.9439 -1.6252 -2.3916 24 6 3.4822 -0.8311 -1.1673 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8901 28 1 1.6313 -1.7313 1.2779 29 1 3.1285 -0.7704 1.2214 30 1 2.6868 -1.9838 4.7351 31 1 2.0236 0.9975 -2.4487 32 1 0.4987 0.0788 -2.4277 33 1 1.7518 -0.2680 -4.5529 34 1 1.5880 -1.7830 -3.6319 35 1 3.7007 0.2460 -5.9160 36 1 2.6556 -1.1055 -6.4683 37 1 4.9101 -0.5375 -7.8493 38 1 4.4935 -2.2465 -7.5213 39 1 6.5485 -2.1737 -6.5618 40 1 5.9059 -2.6150 -4.4945 41 1 5.9350 -0.8552 -4.2006 42 1 3.5061 -2.6230 -2.3640 43 1 5.0309 -1.7043 -2.3850 44 1 3.9416 0.1574 -1.1807 45 1 3.7778 -1.3575 -0.2598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695844043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:38 Heat of formation + Delta-G solvation = 12.558716 kcal Electronic energy + Delta-G solvation = -21292.602134 eV Core-core repulsion = 18344.568887 eV Total energy + Delta-G solvation = -2948.033247 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.71562 -38.03858 -35.47564 -32.94964 -31.17867 -30.91871 -29.51670 -28.26363 -26.89117 -25.06107 -23.67115 -22.60096 -21.05832 -20.63152 -19.77292 -19.02119 -16.94803 -16.90912 -16.24119 -14.87002 -14.61269 -14.55203 -14.50547 -14.26477 -13.84877 -13.78155 -13.41741 -12.72655 -12.66849 -12.51021 -12.34627 -11.97157 -11.68234 -11.56069 -11.28758 -11.22282 -11.05253 -10.99613 -10.86712 -10.78851 -10.63672 -10.30116 -10.13309 -9.80447 -9.17042 -9.04940 -8.68958 -8.32088 -8.29259 -7.65774 -5.98649 -4.00113 3.33866 3.38419 3.40620 3.77699 4.08387 4.37525 4.39196 4.55772 4.64373 4.93419 5.06719 5.10164 5.25305 5.35138 5.36936 5.39549 5.48186 5.57908 5.62963 5.70225 5.70730 5.82242 5.87742 5.94490 5.97821 6.05574 6.15929 6.22282 6.35976 6.40738 6.45212 6.60783 6.72962 6.93730 7.06110 7.11585 7.13843 7.16446 7.56763 7.64623 7.83101 7.88241 8.08961 8.45347 9.05732 9.62891 11.12734 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.040907 B = 0.003691 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.320038 B = 7583.671168 C = 8054.627615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.086 3.914 3 H 0.026 0.974 4 C 0.031 3.969 5 C -0.517 4.517 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.536 5.536 14 C 0.054 3.946 15 C 0.061 3.939 16 N -0.527 5.527 17 C 0.062 3.938 18 H 0.045 0.955 19 C -0.121 4.121 20 C 0.046 3.954 21 N -0.682 5.682 22 C 0.053 3.947 23 C 0.058 3.942 24 C 0.056 3.944 25 H 0.030 0.970 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.027 0.973 29 H 0.016 0.984 30 H 0.260 0.740 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.337 0.663 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.039 0.961 43 H 0.075 0.925 44 H 0.035 0.965 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 -0.707 -19.693 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.021 4.021 3 H 0.044 0.956 4 C -0.007 4.007 5 C -0.556 4.556 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.262 5.262 14 C -0.075 4.075 15 C -0.067 4.067 16 N -0.252 5.252 17 C -0.048 4.048 18 H 0.063 0.937 19 C -0.160 4.160 20 C -0.083 4.083 21 N -0.312 5.312 22 C -0.076 4.076 23 C -0.070 4.070 24 C -0.072 4.072 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.153 0.847 40 H 0.067 0.933 41 H 0.106 0.894 42 H 0.058 0.942 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.775 -0.136 -19.472 19.669 hybrid contribution -0.589 -0.540 0.888 1.195 sum 2.187 -0.676 -18.584 18.724 Atomic orbital electron populations 1.21735 0.95347 1.01497 0.99998 1.21816 0.95002 0.95252 0.90069 0.95570 1.19201 0.95971 0.96214 0.89268 1.21154 1.37098 1.06436 0.90869 0.92744 1.24978 0.95312 0.94985 0.99014 1.69951 1.41194 1.18721 1.23487 0.86687 0.79078 0.79904 0.82492 1.20269 1.21333 1.20308 1.62262 1.10524 1.51278 1.02103 1.22150 1.00121 0.95453 0.89743 1.22149 0.86928 0.99453 0.98211 1.62259 1.11603 1.50149 1.01232 1.22884 0.95428 0.95501 0.90953 0.93739 1.22807 0.97810 1.01728 0.93610 1.22795 0.89495 0.99891 0.96137 1.61867 1.17824 1.49277 1.02206 1.22658 0.93510 1.00896 0.90525 1.22232 0.99703 0.96001 0.89081 1.22192 0.88290 0.99197 0.97539 0.95055 0.92789 0.91532 0.95482 0.96617 0.92988 0.94765 0.90381 0.90896 0.94358 0.89563 0.91142 0.90274 0.94136 0.84745 0.93282 0.89373 0.94227 0.90648 0.94655 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.81 37.15 0.33 -2.16 16 2 C 0.09 1.81 2.11 -67.72 -0.14 1.66 16 3 H 0.03 0.58 8.14 -51.92 -0.42 0.15 16 4 C 0.03 0.79 4.16 -27.88 -0.12 0.67 16 5 C -0.52 -14.39 8.30 -34.44 -0.29 -14.68 16 6 H 0.05 1.47 7.10 -52.49 -0.37 1.10 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.54 -9.89 4.58 -226.49 -1.04 -10.92 16 14 C 0.05 0.83 5.35 -3.77 -0.02 0.81 16 15 C 0.06 0.80 5.43 -3.76 -0.02 0.78 16 16 N -0.53 -7.01 4.53 -224.14 -1.02 -8.02 16 17 C 0.06 0.69 2.65 -65.75 -0.17 0.52 16 18 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 19 C -0.12 -1.17 5.42 -24.45 -0.13 -1.30 16 20 C 0.05 0.39 7.58 -2.30 -0.02 0.38 16 21 N -0.68 -6.55 7.39 -110.80 -0.82 -7.37 16 22 C 0.05 0.57 6.11 -2.83 -0.02 0.55 16 23 C 0.06 0.84 5.41 -3.77 -0.02 0.82 16 24 C 0.06 0.99 5.18 -3.77 -0.02 0.97 16 25 H 0.03 0.51 6.38 -51.93 -0.33 0.18 16 26 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 27 H 0.07 1.36 6.92 -51.93 -0.36 1.00 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.02 0.42 6.08 -51.93 -0.32 0.11 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.15 6.19 -51.93 -0.32 0.83 16 33 H 0.07 0.83 7.00 -51.93 -0.36 0.47 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.60 8.02 -51.93 -0.42 0.18 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.34 2.61 8.91 -39.29 -0.35 2.26 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 1.08 7.68 -51.93 -0.40 0.68 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.99 6.90 -51.93 -0.36 0.63 16 44 H 0.04 0.65 8.14 -51.92 -0.42 0.22 16 45 H 0.09 1.86 5.96 -51.93 -0.31 1.55 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -29.53 335.77 -10.94 -40.46 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -8.10 Total: -0.42 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -0.74 Total: -9.41 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -2.14 Total: -52.27 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.53 -10.94 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695844043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.024 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds