Wall clock time and date at job start Mon Mar 30 2020 05:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.47377 * 2 1 4 4 C 1.52999 * 109.47701 * 120.00103 * 2 1 3 5 5 C 1.50709 * 109.47015 * 296.84908 * 4 2 1 6 6 H 1.07999 * 119.99800 * 355.52415 * 5 4 2 7 7 C 1.37865 * 120.00267 * 175.52387 * 5 4 2 8 8 N 1.31517 * 120.00299 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00182 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47310 * 59.99827 * 9 7 5 11 11 H 1.48507 * 109.47188 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47052 * 299.99508 * 9 7 5 13 13 N 1.46900 * 109.47361 * 240.00202 * 2 1 3 14 14 C 1.46957 * 110.99897 * 61.89153 * 13 2 1 15 15 C 1.53054 * 109.36626 * 183.18943 * 14 13 2 16 16 N 1.46959 * 109.36374 * 301.60346 * 15 14 13 17 17 C 1.46894 * 110.99993 * 183.18394 * 16 15 14 18 18 H 1.09002 * 110.77019 * 297.71768 * 17 16 15 19 19 C 1.55404 * 110.84792 * 60.97850 * 17 16 15 20 20 C 1.54904 * 101.74386 * 153.86109 * 19 17 16 21 21 N 1.47839 * 104.79700 * 323.02190 * 20 19 17 22 22 C 1.47446 * 108.56943 * 24.09610 * 21 20 19 23 23 C 1.46957 * 110.88366 * 59.31676 * 16 15 14 24 24 C 1.46951 * 111.00356 * 185.69435 * 13 2 1 25 25 H 1.08995 * 109.47226 * 60.00161 * 1 2 3 26 26 H 1.09007 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47175 * 299.99346 * 1 2 3 28 28 H 1.08997 * 109.47244 * 56.84452 * 4 2 1 29 29 H 1.08996 * 109.47717 * 176.85106 * 4 2 1 30 30 H 0.96994 * 120.00749 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.48683 * 63.22406 * 14 13 2 32 32 H 1.08995 * 109.48899 * 303.15682 * 14 13 2 33 33 H 1.08994 * 109.49040 * 181.63298 * 15 14 13 34 34 H 1.09006 * 109.48411 * 61.56114 * 15 14 13 35 35 H 1.09000 * 110.86710 * 35.77286 * 19 17 16 36 36 H 1.09000 * 111.02389 * 272.02219 * 19 17 16 37 37 H 1.09000 * 110.36961 * 204.18795 * 20 19 17 38 38 H 1.09001 * 110.46548 * 81.90090 * 20 19 17 39 39 H 1.00903 * 111.00171 * 146.36564 * 21 20 19 40 40 H 1.08993 * 109.88832 * 118.41680 * 22 21 20 41 41 H 1.09000 * 109.88727 * 239.44762 * 22 21 20 42 42 H 1.09000 * 109.48683 * 60.64711 * 23 16 15 43 43 H 1.08995 * 109.48899 * 180.71435 * 23 16 15 44 44 H 1.09009 * 109.48775 * 296.77601 * 24 13 2 45 45 H 1.09002 * 109.49205 * 56.84166 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6025 0.0328 2.4785 6 1 1.0817 0.9736 2.3780 7 6 1.8671 -0.4782 3.7313 8 7 2.5009 -1.6241 3.8537 9 14 1.3242 0.4561 5.2550 10 1 -0.1520 0.6166 5.2375 11 1 1.7250 -0.3002 6.4685 12 1 1.9675 1.7945 5.2704 13 7 2.0196 -0.6924 -1.1994 14 6 1.5858 -0.0004 -2.4211 15 6 2.0473 -0.7945 -3.6454 16 7 3.5100 -0.9331 -3.6132 17 6 3.9997 -1.6256 -4.8126 18 1 3.5994 -2.6381 -4.8648 19 6 3.6419 -0.8272 -6.0970 20 6 4.7527 -1.2870 -7.0737 21 7 5.9622 -1.4207 -6.2341 22 6 5.5425 -1.6468 -4.8388 23 6 3.9439 -1.6252 -2.3916 24 6 3.4822 -0.8311 -1.1673 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8901 28 1 1.6313 -1.7313 1.2779 29 1 3.1285 -0.7704 1.2214 30 1 2.6868 -1.9838 4.7351 31 1 2.0236 0.9975 -2.4487 32 1 0.4987 0.0788 -2.4277 33 1 1.7518 -0.2680 -4.5529 34 1 1.5880 -1.7830 -3.6319 35 1 3.7007 0.2460 -5.9160 36 1 2.6556 -1.1055 -6.4683 37 1 4.9101 -0.5375 -7.8493 38 1 4.4935 -2.2465 -7.5213 39 1 6.5485 -2.1737 -6.5618 40 1 5.9059 -2.6150 -4.4945 41 1 5.9350 -0.8552 -4.2006 42 1 3.5061 -2.6230 -2.3640 43 1 5.0309 -1.7043 -2.3850 44 1 3.9416 0.1574 -1.1807 45 1 3.7778 -1.3575 -0.2598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695844043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:38 Heat of formation + Delta-G solvation = -9.606633 kcal Electronic energy + Delta-G solvation = -21293.563296 eV Core-core repulsion = 18344.568887 eV Total energy + Delta-G solvation = -2948.994409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.82541 -39.18929 -36.80475 -34.88435 -32.70292 -32.22261 -30.39225 -29.47500 -28.59015 -26.42438 -25.28642 -24.06503 -21.88309 -21.73544 -21.02673 -20.58429 -18.72246 -17.69857 -17.62943 -16.60429 -16.15013 -15.79450 -15.68985 -15.65852 -15.29667 -14.83036 -14.55641 -14.20527 -13.79708 -13.68198 -13.52539 -13.43222 -13.22291 -12.97541 -12.67011 -12.63234 -12.56482 -12.35223 -12.21693 -12.12645 -11.91680 -11.74807 -11.59335 -11.49856 -11.14428 -10.93964 -10.50232 -9.48042 -9.31612 -9.15793 -8.17811 -6.27373 1.40258 1.42949 1.50581 2.41028 2.77564 3.03891 3.15663 3.33801 3.54742 3.87071 3.96044 4.09992 4.10933 4.21138 4.27672 4.37545 4.38521 4.42001 4.45776 4.57786 4.60925 4.66532 4.71290 4.82384 4.91812 4.93158 4.96831 4.99145 5.00995 5.09853 5.13547 5.21254 5.23228 5.42185 5.48615 5.70941 5.78633 5.87288 5.98018 6.06110 6.17331 6.34524 6.38759 6.47718 6.87926 7.40539 8.94108 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.040907 B = 0.003691 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.320038 B = 7583.671168 C = 8054.627615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.095 3.905 3 H 0.017 0.983 4 C 0.041 3.959 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.932 5.932 9 Si 0.961 3.039 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.269 1.269 13 N -0.543 5.543 14 C 0.054 3.946 15 C 0.067 3.933 16 N -0.533 5.533 17 C 0.061 3.939 18 H 0.047 0.953 19 C -0.117 4.117 20 C 0.048 3.952 21 N -0.692 5.692 22 C 0.057 3.943 23 C 0.070 3.930 24 C 0.059 3.941 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.053 0.947 28 H -0.007 1.007 29 H -0.008 1.008 30 H 0.262 0.738 31 H 0.029 0.971 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.348 0.652 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.033 0.967 43 H 0.088 0.912 44 H 0.025 0.975 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.811 -0.009 -21.417 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.013 4.013 3 H 0.035 0.965 4 C 0.004 3.996 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.786 3.214 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.194 1.194 13 N -0.268 5.268 14 C -0.074 4.074 15 C -0.061 4.061 16 N -0.259 5.259 17 C -0.048 4.048 18 H 0.065 0.935 19 C -0.155 4.155 20 C -0.081 4.081 21 N -0.323 5.323 22 C -0.073 4.073 23 C -0.058 4.058 24 C -0.069 4.069 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.165 0.835 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.052 0.948 43 H 0.106 0.894 44 H 0.044 0.956 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.994 0.567 -21.229 21.330 hybrid contribution -0.297 -0.772 1.368 1.599 sum 1.697 -0.205 -19.861 19.934 Atomic orbital electron populations 1.21631 0.93676 1.01321 1.01080 1.21546 0.96243 0.94025 0.89494 0.96509 1.19006 0.94371 0.94766 0.91466 1.21550 1.36960 1.06777 0.91898 0.92163 1.25908 0.95271 0.95874 1.02543 1.70096 1.42404 1.20419 1.24329 0.85559 0.79098 0.78607 0.78133 1.19093 1.20993 1.19360 1.62233 1.10816 1.51417 1.02368 1.22259 1.00856 0.95277 0.89000 1.22132 0.86791 0.99214 0.97990 1.62250 1.11779 1.50409 1.01415 1.22946 0.95719 0.95656 0.90484 0.93504 1.22793 0.99106 1.00690 0.92914 1.22834 0.88520 1.00919 0.95796 1.61825 1.18610 1.50046 1.01819 1.22545 0.93119 1.00559 0.91056 1.22048 1.00332 0.94951 0.88505 1.22087 0.88074 0.98721 0.98023 0.91577 0.93529 0.92789 0.98845 0.98943 0.92892 0.95237 0.89117 0.88276 0.94632 0.90754 0.89591 0.89557 0.92567 0.83523 0.92506 0.91377 0.94850 0.89411 0.95648 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.56 8.81 71.98 0.63 -3.93 16 2 C 0.09 4.07 2.11 44.91 0.09 4.16 16 3 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 4 C 0.04 2.21 4.16 29.85 0.12 2.34 16 5 C -0.53 -30.36 8.30 25.60 0.21 -30.15 16 6 H 0.06 3.28 7.10 -2.91 -0.02 3.26 16 7 C 0.00 0.10 5.46 84.65 0.46 0.57 16 8 N -0.93 -57.18 13.29 21.44 0.28 -56.90 16 9 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 N -0.54 -20.19 4.58 -870.48 -3.98 -24.17 16 14 C 0.05 1.59 5.35 86.31 0.46 2.05 16 15 C 0.07 1.62 5.43 86.31 0.47 2.09 16 16 N -0.53 -13.47 4.53 -863.05 -3.91 -17.38 16 17 C 0.06 1.24 2.65 46.19 0.12 1.36 16 18 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 19 C -0.12 -1.93 5.42 32.07 0.17 -1.76 16 20 C 0.05 0.69 7.58 86.77 0.66 1.35 16 21 N -0.69 -11.89 7.39 -504.45 -3.73 -15.62 16 22 C 0.06 1.12 6.11 86.65 0.53 1.65 16 23 C 0.07 2.03 5.41 86.31 0.47 2.49 16 24 C 0.06 2.17 5.18 86.31 0.45 2.62 16 25 H 0.07 2.04 6.38 -2.39 -0.02 2.03 16 26 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.05 2.17 6.92 -2.39 -0.02 2.16 16 28 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H -0.01 -0.44 6.08 -2.39 -0.01 -0.45 16 30 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 2.43 6.19 -2.39 -0.01 2.42 16 33 H 0.10 1.94 7.00 -2.39 -0.02 1.92 16 34 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 36 H 0.09 1.16 8.02 -2.39 -0.02 1.14 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.35 4.64 8.91 -89.69 -0.80 3.84 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.62 7.68 -2.39 -0.02 1.61 16 42 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.09 2.31 6.90 -2.39 -0.02 2.29 16 44 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.06 2.70 5.96 -2.39 -0.01 2.69 16 Total: -1.00 -64.74 335.77 -4.31 -69.04 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.15 Total: 13.61 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 4.86 Total: -15.16 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -11.34 Total: -114.07 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -64.74 -4.31 -69.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695844043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.438 kcal (2) G-P(sol) polarization free energy of solvation -64.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds