Wall clock time and date at job start Mon Mar 30 2020 04:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99788 * 2 1 4 4 C 1.53000 * 109.47340 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47003 * 65.00023 * 4 3 2 6 6 C 1.46896 * 111.00178 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47320 * 180.02562 * 6 5 4 8 8 C 1.34670 * 125.99226 * 95.00048 * 7 6 5 9 9 N 1.36879 * 106.81946 * 179.97438 * 8 7 6 10 10 C 1.46496 * 126.39676 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.47241 * 0.02562 * 10 9 8 12 12 C 1.53001 * 109.47017 * 119.99979 * 10 9 8 13 13 C 1.52997 * 109.47484 * 240.00284 * 10 9 8 14 14 C 1.50701 * 109.47212 * 175.00064 * 13 10 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 10 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.35043 * 107.20336 * 0.26430 * 9 8 7 23 23 N 1.30503 * 108.70144 * 359.55784 * 22 9 8 24 24 H 1.09000 * 109.47340 * 60.00231 * 1 2 3 25 25 H 1.09006 * 109.47057 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47211 * 299.99877 * 1 2 3 27 27 H 1.09004 * 109.47046 * 59.99979 * 3 2 1 28 28 H 1.09007 * 109.47411 * 299.99856 * 3 2 1 29 29 H 1.08999 * 109.46856 * 305.00449 * 4 3 2 30 30 H 1.09000 * 109.47548 * 184.99939 * 4 3 2 31 31 H 1.00906 * 110.99887 * 303.95514 * 5 4 3 32 32 H 1.09002 * 109.47558 * 59.99802 * 6 5 4 33 33 H 1.08999 * 109.46998 * 300.00172 * 6 5 4 34 34 H 1.08002 * 126.58729 * 359.96055 * 8 7 6 35 35 H 1.09008 * 109.46731 * 60.00158 * 12 10 9 36 36 H 1.08998 * 109.47430 * 180.02562 * 12 10 9 37 37 H 1.08996 * 109.47271 * 300.00777 * 12 10 9 38 38 H 1.09002 * 109.47153 * 55.00066 * 13 10 9 39 39 H 1.09001 * 109.46832 * 295.00256 * 13 10 9 40 40 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 41 41 H 1.08003 * 125.64532 * 179.72019 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9779 0.5624 -1.2543 6 6 5.4404 0.4295 -1.2890 7 6 5.8560 -0.2108 -2.5884 8 6 6.2435 0.4389 -3.7025 9 7 6.5307 -0.5172 -4.6390 10 6 6.9923 -0.2810 -6.0091 11 1 7.0781 0.7915 -6.1839 12 6 8.3586 -0.9404 -6.2077 13 6 5.9885 -0.8803 -6.9960 14 6 6.3986 -0.5317 -8.4036 15 1 7.2866 0.0579 -8.5770 16 6 5.6406 -0.9665 -9.4702 17 7 4.5595 -1.6849 -9.2590 18 14 6.1493 -0.5350 -11.2149 19 1 7.5011 -1.0864 -11.4872 20 1 5.1749 -1.1166 -12.1728 21 1 6.1761 0.9415 -11.3720 22 6 6.3029 -1.7186 -4.0660 23 7 5.9052 -1.5278 -2.8378 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8507 0.5686 0.8427 30 1 3.9784 2.1766 0.0902 31 1 3.5305 -0.3315 -1.3920 32 1 5.7687 -0.1921 -0.4559 33 1 5.8969 1.4159 -1.2082 34 1 6.3139 1.5088 -3.8322 35 1 8.2732 -2.0130 -6.0328 36 1 8.7023 -0.7644 -7.2270 37 1 9.0737 -0.5136 -5.5046 38 1 4.9964 -0.4757 -6.7958 39 1 5.9688 -1.9641 -6.8811 40 1 4.0260 -1.9904 -10.0093 41 1 6.4313 -2.6785 -4.5442 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695883684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:49 Heat of formation + Delta-G solvation = 1.190610 kcal Electronic energy + Delta-G solvation = -19834.737400 eV Core-core repulsion = 16750.378100 eV Total energy + Delta-G solvation = -3084.359300 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.52883 -38.21555 -36.14483 -35.21996 -32.69464 -30.85577 -30.14369 -28.30075 -27.17155 -26.33412 -24.50751 -23.76224 -21.95448 -21.80170 -20.05859 -18.96089 -16.82175 -16.73640 -16.19223 -16.05305 -15.43441 -14.92165 -14.82600 -14.58581 -14.03888 -13.81407 -13.63736 -13.20700 -13.11189 -12.48509 -12.40162 -12.13197 -11.98026 -11.67927 -11.61196 -11.52712 -11.14969 -11.06615 -11.00786 -10.63622 -10.31275 -9.93139 -9.81030 -9.50399 -9.30213 -8.79944 -8.51502 -8.31615 -7.82497 -6.15363 -4.20786 2.65911 3.24339 3.29825 3.30647 3.49756 3.53546 3.67025 4.34138 4.47531 4.92161 5.02014 5.13694 5.17934 5.20397 5.25320 5.27400 5.34268 5.47371 5.50514 5.56211 5.59732 5.67438 5.74647 5.77317 5.87436 5.94097 6.28314 6.33619 6.53369 6.64420 6.95724 6.98426 7.08780 7.26857 7.41921 7.49488 7.55185 7.72987 7.89296 8.16522 8.64352 8.83596 9.44264 10.95622 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.003539 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.158114 B = 7910.851479 C = 8775.377010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.061 3.939 4 C 0.061 3.939 5 N -0.684 5.684 6 C 0.153 3.847 7 C -0.018 4.018 8 C -0.036 4.036 9 N -0.437 5.437 10 C 0.127 3.873 11 H 0.088 0.912 12 C -0.146 4.146 13 C 0.021 3.979 14 C -0.527 4.527 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.896 3.104 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.190 3.810 23 N -0.503 5.503 24 H 0.042 0.958 25 H 0.084 0.916 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.084 0.916 31 H 0.355 0.645 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.165 0.835 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.264 0.736 41 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.180 5.729 15.932 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.016 4.016 4 C -0.068 4.068 5 N -0.317 5.317 6 C 0.023 3.977 7 C -0.148 4.148 8 C -0.173 4.173 9 N -0.117 5.117 10 C 0.025 3.975 11 H 0.106 0.894 12 C -0.204 4.204 13 C -0.016 4.016 14 C -0.565 4.565 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.526 5.526 18 Si 0.724 3.276 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.093 4.093 23 N -0.223 5.223 24 H 0.061 0.939 25 H 0.103 0.897 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.174 0.826 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.182 0.818 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -1.356 5.465 15.883 16.852 hybrid contribution 0.221 0.344 -1.110 1.183 sum -1.135 5.809 14.773 15.914 Atomic orbital electron populations 1.22709 0.81045 1.02739 0.99781 1.87874 1.19738 1.28063 1.95384 1.22627 0.93671 0.84924 1.00363 1.21955 0.93070 1.00170 0.91644 1.60543 1.06432 1.31059 1.33653 1.19931 0.87559 0.98277 0.91890 1.20230 1.08552 0.89949 0.96091 1.22368 1.09394 0.95438 0.90088 1.46027 1.46692 1.06599 1.12377 1.21964 0.96476 1.01592 0.77436 0.89424 1.22036 0.94889 1.00674 1.02800 1.19430 0.93265 0.96666 0.92257 1.20967 1.10713 1.34620 0.90238 0.92227 1.24998 0.94803 0.94853 0.99438 1.69955 1.15308 1.35587 1.31751 0.86592 0.78396 0.78777 0.83872 1.20091 1.21164 1.20129 1.24655 1.03670 0.91072 0.89928 1.70084 1.20418 1.17132 1.14621 0.93927 0.89708 0.94409 0.93180 0.92221 0.94637 0.89801 0.82568 0.94496 0.90553 0.81788 0.92461 0.89693 0.93996 0.95788 0.95647 0.92617 0.78637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.76 10.22 -35.23 -0.36 -5.12 16 3 C 0.06 0.62 6.28 37.16 0.23 0.86 16 4 C 0.06 0.66 6.11 -3.82 -0.02 0.63 16 5 N -0.68 -9.50 6.49 -115.06 -0.75 -10.25 16 6 C 0.15 2.14 6.22 -4.98 -0.03 2.11 16 7 C -0.02 -0.32 6.60 -82.85 -0.55 -0.86 16 8 C -0.04 -0.63 11.45 -16.56 -0.19 -0.82 16 9 N -0.44 -8.15 2.62 -111.46 -0.29 -8.44 16 10 C 0.13 2.44 3.00 -67.93 -0.20 2.24 16 11 H 0.09 1.65 8.08 -51.92 -0.42 1.23 16 12 C -0.15 -2.50 9.06 37.16 0.34 -2.16 16 13 C 0.02 0.52 4.44 -27.88 -0.12 0.39 16 14 C -0.53 -13.74 8.41 -34.44 -0.29 -14.03 16 15 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 18 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 C 0.19 3.57 11.65 -90.37 -1.05 2.52 16 23 N -0.50 -9.65 11.25 -10.87 -0.12 -9.77 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.36 5.61 8.28 -39.29 -0.33 5.29 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.16 2.43 8.06 -52.49 -0.42 2.00 16 35 H 0.06 0.96 7.95 -51.92 -0.41 0.55 16 36 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.20 3.34 8.06 -52.48 -0.42 2.92 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -30.36 344.80 -8.43 -38.79 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.94 Total: 5.08 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.88 Total: -6.11 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.42 Total: -53.45 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.36 Total: -5.12 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.36 -8.43 -38.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695883684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.979 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds