Wall clock time and date at job start Mon Mar 30 2020 04:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99788 * 2 1 4 4 C 1.53000 * 109.47340 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47003 * 65.00023 * 4 3 2 6 6 C 1.46896 * 111.00178 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47320 * 180.02562 * 6 5 4 8 8 C 1.34670 * 125.99226 * 95.00048 * 7 6 5 9 9 N 1.36879 * 106.81946 * 179.97438 * 8 7 6 10 10 C 1.46496 * 126.39676 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.47241 * 0.02562 * 10 9 8 12 12 C 1.53001 * 109.47017 * 119.99979 * 10 9 8 13 13 C 1.52997 * 109.47484 * 240.00284 * 10 9 8 14 14 C 1.50701 * 109.47212 * 175.00064 * 13 10 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 10 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.35043 * 107.20336 * 0.26430 * 9 8 7 23 23 N 1.30503 * 108.70144 * 359.55784 * 22 9 8 24 24 H 1.09000 * 109.47340 * 60.00231 * 1 2 3 25 25 H 1.09006 * 109.47057 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47211 * 299.99877 * 1 2 3 27 27 H 1.09004 * 109.47046 * 59.99979 * 3 2 1 28 28 H 1.09007 * 109.47411 * 299.99856 * 3 2 1 29 29 H 1.08999 * 109.46856 * 305.00449 * 4 3 2 30 30 H 1.09000 * 109.47548 * 184.99939 * 4 3 2 31 31 H 1.00906 * 110.99887 * 303.95514 * 5 4 3 32 32 H 1.09002 * 109.47558 * 59.99802 * 6 5 4 33 33 H 1.08999 * 109.46998 * 300.00172 * 6 5 4 34 34 H 1.08002 * 126.58729 * 359.96055 * 8 7 6 35 35 H 1.09008 * 109.46731 * 60.00158 * 12 10 9 36 36 H 1.08998 * 109.47430 * 180.02562 * 12 10 9 37 37 H 1.08996 * 109.47271 * 300.00777 * 12 10 9 38 38 H 1.09002 * 109.47153 * 55.00066 * 13 10 9 39 39 H 1.09001 * 109.46832 * 295.00256 * 13 10 9 40 40 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 41 41 H 1.08003 * 125.64532 * 179.72019 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9779 0.5624 -1.2543 6 6 5.4404 0.4295 -1.2890 7 6 5.8560 -0.2108 -2.5884 8 6 6.2435 0.4389 -3.7025 9 7 6.5307 -0.5172 -4.6390 10 6 6.9923 -0.2810 -6.0091 11 1 7.0781 0.7915 -6.1839 12 6 8.3586 -0.9404 -6.2077 13 6 5.9885 -0.8803 -6.9960 14 6 6.3986 -0.5317 -8.4036 15 1 7.2866 0.0579 -8.5770 16 6 5.6406 -0.9665 -9.4702 17 7 4.5595 -1.6849 -9.2590 18 14 6.1493 -0.5350 -11.2149 19 1 7.5011 -1.0864 -11.4872 20 1 5.1749 -1.1166 -12.1728 21 1 6.1761 0.9415 -11.3720 22 6 6.3029 -1.7186 -4.0660 23 7 5.9052 -1.5278 -2.8378 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8507 0.5686 0.8427 30 1 3.9784 2.1766 0.0902 31 1 3.5305 -0.3315 -1.3920 32 1 5.7687 -0.1921 -0.4559 33 1 5.8969 1.4159 -1.2082 34 1 6.3139 1.5088 -3.8322 35 1 8.2732 -2.0130 -6.0328 36 1 8.7023 -0.7644 -7.2270 37 1 9.0737 -0.5136 -5.5046 38 1 4.9964 -0.4757 -6.7958 39 1 5.9688 -1.9641 -6.8811 40 1 4.0260 -1.9904 -10.0093 41 1 6.4313 -2.6785 -4.5442 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695883684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:49 Heat of formation + Delta-G solvation = -17.966382 kcal Electronic energy + Delta-G solvation = -19835.568110 eV Core-core repulsion = 16750.378100 eV Total energy + Delta-G solvation = -3085.190009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.94826 -39.05432 -37.50946 -36.50510 -34.61240 -32.07121 -31.59811 -29.47678 -28.89828 -27.13619 -25.92788 -25.25249 -23.51411 -22.76055 -21.46563 -20.40471 -18.69318 -17.67640 -17.46979 -17.02681 -16.61445 -16.57046 -16.09688 -15.73646 -15.31540 -15.13045 -14.93872 -14.64204 -14.41464 -14.16328 -13.77049 -13.32189 -13.11695 -12.96925 -12.86504 -12.71917 -12.62265 -12.39836 -12.35710 -12.07363 -12.00009 -11.66607 -11.40541 -10.83884 -10.60530 -10.59498 -10.33067 -9.40887 -9.15621 -8.22896 -6.35110 1.25358 1.43040 1.44971 1.52745 2.04888 2.14012 2.42279 2.92787 3.12186 3.44076 3.75941 3.85215 4.07615 4.12531 4.23724 4.29410 4.37333 4.42222 4.45182 4.48386 4.54314 4.59031 4.73803 4.80439 4.86268 4.88772 4.93513 4.96873 5.05909 5.24546 5.32278 5.37700 5.65795 5.72013 5.89155 6.06845 6.12822 6.27800 6.37911 6.43070 6.79726 7.22918 7.35098 8.89045 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.003539 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.158114 B = 7910.851479 C = 8775.377010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.421 6.421 3 C 0.060 3.940 4 C 0.061 3.939 5 N -0.694 5.694 6 C 0.157 3.843 7 C -0.025 4.025 8 C -0.043 4.043 9 N -0.443 5.443 10 C 0.139 3.861 11 H 0.098 0.902 12 C -0.138 4.138 13 C 0.031 3.969 14 C -0.534 4.534 15 H 0.076 0.924 16 C 0.003 3.997 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.263 1.263 20 H -0.290 1.290 21 H -0.266 1.266 22 C 0.172 3.828 23 N -0.522 5.522 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.036 0.964 30 H 0.107 0.893 31 H 0.340 0.660 32 H 0.036 0.964 33 H 0.102 0.898 34 H 0.191 0.809 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.066 0.934 38 H -0.017 1.017 39 H 0.001 0.999 40 H 0.263 0.737 41 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.039 7.470 16.360 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.341 6.341 3 C -0.017 4.017 4 C -0.067 4.067 5 N -0.326 5.326 6 C 0.028 3.972 7 C -0.155 4.155 8 C -0.178 4.178 9 N -0.123 5.123 10 C 0.037 3.963 11 H 0.116 0.884 12 C -0.195 4.195 13 C -0.006 4.006 14 C -0.572 4.572 15 H 0.094 0.906 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.187 1.187 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.110 4.110 23 N -0.242 5.242 24 H 0.061 0.939 25 H 0.107 0.893 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.125 0.875 31 H 0.157 0.843 32 H 0.054 0.946 33 H 0.120 0.880 34 H 0.208 0.792 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.002 0.998 39 H 0.019 0.981 40 H 0.072 0.928 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.200 7.229 16.337 17.866 hybrid contribution -0.197 -0.197 -1.156 1.189 sum -0.397 7.032 15.181 16.735 Atomic orbital electron populations 1.22852 0.79748 1.03413 1.00717 1.87836 1.21349 1.29314 1.95588 1.22711 0.93259 0.84441 1.01242 1.22089 0.93617 1.00917 0.90127 1.60587 1.06162 1.30146 1.35668 1.20013 0.87869 0.99258 0.90068 1.20807 1.07851 0.89324 0.97488 1.22876 1.08815 0.96463 0.89682 1.45993 1.47135 1.06932 1.12202 1.21692 0.96014 1.01864 0.76737 0.88374 1.21950 0.93815 1.00503 1.03276 1.19216 0.92723 0.95152 0.93548 1.21429 1.10875 1.33930 0.90990 0.90605 1.25960 0.94744 0.94768 1.04102 1.70112 1.16857 1.37315 1.32939 0.85479 0.78282 0.78860 0.78319 1.18711 1.21538 1.19080 1.24882 1.04293 0.91617 0.90231 1.70095 1.20778 1.18523 1.14837 0.93924 0.89302 0.92476 0.90621 0.92891 0.94610 0.87541 0.84316 0.94611 0.87964 0.79206 0.92712 0.89981 0.91478 0.99844 0.98063 0.92786 0.78100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.42 -9.99 10.22 -148.98 -1.52 -11.51 16 3 C 0.06 1.14 6.28 71.98 0.45 1.59 16 4 C 0.06 1.21 6.11 86.30 0.53 1.74 16 5 N -0.69 -18.61 6.49 -517.93 -3.36 -21.98 16 6 C 0.16 4.16 6.22 85.56 0.53 4.69 16 7 C -0.03 -0.85 6.60 41.39 0.27 -0.58 16 8 C -0.04 -1.42 11.45 83.09 0.95 -0.47 16 9 N -0.44 -16.29 2.62 -506.54 -1.33 -17.61 16 10 C 0.14 5.25 3.00 44.99 0.14 5.39 16 11 H 0.10 3.52 8.08 -2.38 -0.02 3.50 16 12 C -0.14 -4.48 9.06 71.98 0.65 -3.83 16 13 C 0.03 1.55 4.44 29.85 0.13 1.68 16 14 C -0.53 -27.78 8.41 25.60 0.22 -27.57 16 15 H 0.08 3.62 7.06 -2.91 -0.02 3.60 16 16 C 0.00 0.15 5.46 84.66 0.46 0.61 16 17 N -0.93 -55.31 13.29 21.45 0.28 -55.02 16 18 Si 0.97 42.01 29.54 68.60 2.03 44.04 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 20 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 C 0.17 6.56 11.65 180.26 2.10 8.66 16 23 N -0.52 -20.10 11.25 -188.31 -2.12 -22.21 16 24 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.05 1.06 8.14 -2.38 -0.02 1.05 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.34 10.79 8.28 -89.69 -0.74 10.05 16 32 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.19 5.14 8.06 -2.91 -0.02 5.12 16 35 H 0.05 1.79 7.95 -2.38 -0.02 1.77 16 36 H 0.08 2.72 6.95 -2.39 -0.02 2.70 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H 0.00 0.05 8.08 -2.39 -0.02 0.04 16 40 H 0.26 14.84 8.31 -92.71 -0.77 14.06 16 41 H 0.20 7.11 8.06 -2.91 -0.02 7.09 16 Total: -1.00 -65.96 344.80 1.92 -64.04 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.25 Total: 26.59 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 7.68 Total: -6.34 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -6.52 Total: -116.82 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -1.52 Total: -11.51 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -65.96 1.92 -64.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695883684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.076 kcal (2) G-P(sol) polarization free energy of solvation -65.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds