Wall clock time and date at job start Mon Mar 30 2020 04:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99789 * 2 1 4 4 C 1.53000 * 109.46996 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47145 * 65.00253 * 4 3 2 6 6 C 1.46898 * 110.99763 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47074 * 179.97438 * 6 5 4 8 8 N 1.30502 * 125.65107 * 269.95599 * 7 6 5 9 9 C 1.34122 * 109.25741 * 180.02562 * 8 7 6 10 10 C 1.34672 * 108.02017 * 359.73374 * 9 8 7 11 11 N 1.35049 * 125.65148 * 89.98993 * 7 6 5 12 12 C 1.46498 * 126.39355 * 359.97436 * 11 7 6 13 13 H 1.08998 * 109.47646 * 359.97438 * 12 11 7 14 14 C 1.53004 * 109.46734 * 239.99412 * 12 11 7 15 15 C 1.53004 * 109.47304 * 119.99935 * 12 11 7 16 16 C 1.50701 * 109.47211 * 184.99946 * 15 12 11 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 12 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 12 19 19 N 1.31523 * 119.99908 * 179.72112 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 359.71709 * 18 16 15 21 21 H 1.48500 * 109.47210 * 90.00069 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00300 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00390 * 20 18 16 24 24 H 1.09004 * 109.47086 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47477 * 300.00033 * 1 2 3 26 26 H 1.09001 * 109.47528 * 60.00352 * 1 2 3 27 27 H 1.09001 * 109.47740 * 59.99694 * 3 2 1 28 28 H 1.08999 * 109.47532 * 300.00068 * 3 2 1 29 29 H 1.09000 * 109.47472 * 304.99670 * 4 3 2 30 30 H 1.09002 * 109.46865 * 184.99865 * 4 3 2 31 31 H 1.00901 * 110.99687 * 303.95096 * 5 4 3 32 32 H 1.08993 * 109.47715 * 59.99334 * 6 5 4 33 33 H 1.08999 * 109.46760 * 299.98898 * 6 5 4 34 34 H 1.08002 * 125.99343 * 180.02562 * 9 8 7 35 35 H 1.07998 * 126.59241 * 180.27970 * 10 9 8 36 36 H 1.09000 * 109.46939 * 180.02562 * 14 12 11 37 37 H 1.08997 * 109.47262 * 299.99923 * 14 12 11 38 38 H 1.08990 * 109.47425 * 60.00086 * 14 12 11 39 39 H 1.09000 * 109.47211 * 64.98973 * 15 12 11 40 40 H 1.09007 * 109.46376 * 304.99515 * 15 12 11 41 41 H 0.96995 * 120.00181 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9778 0.5623 -1.2543 6 6 5.4404 0.4293 -1.2889 7 6 5.8559 -0.2121 -2.5878 8 7 5.9899 -1.4936 -2.7946 9 6 6.3722 -1.6993 -4.0636 10 6 6.4735 -0.5000 -4.6678 11 7 6.1519 0.4441 -3.7304 12 6 6.1271 1.8951 -3.9309 13 1 5.8280 2.3849 -3.0043 14 6 5.1266 2.2402 -5.0358 15 6 7.5212 2.3778 -4.3364 16 6 7.5264 3.8823 -4.4231 17 1 6.6253 4.4385 -4.2107 18 6 8.6798 4.5483 -4.7797 19 7 8.6829 5.8610 -4.8607 20 14 10.2381 3.5862 -5.1476 21 1 10.2820 3.2488 -6.5931 22 1 11.4229 4.4093 -4.7952 23 1 10.2484 2.3356 -4.3469 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6885 1.8464 0.8899 28 1 1.6885 1.8464 -0.8899 29 1 3.8508 0.5686 0.8427 30 1 3.9783 2.1766 0.0902 31 1 3.5304 -0.3316 -1.3920 32 1 5.7686 -0.1921 -0.4558 33 1 5.8968 1.4159 -1.2082 34 1 6.5608 -2.6588 -4.5221 35 1 6.7566 -0.3180 -5.6940 36 1 5.1085 3.3198 -5.1853 37 1 5.4254 1.7504 -5.9625 38 1 4.1335 1.8964 -4.7470 39 1 7.7834 1.9569 -5.3071 40 1 8.2485 2.0543 -3.5917 41 1 9.4943 6.3296 -5.1112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695886660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:53 Heat of formation + Delta-G solvation = 6.172470 kcal Electronic energy + Delta-G solvation = -20516.798191 eV Core-core repulsion = 17432.654921 eV Total energy + Delta-G solvation = -3084.143270 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.66736 -38.26515 -35.85403 -35.69083 -32.63463 -31.04672 -30.27495 -28.45872 -27.64558 -26.42567 -24.67339 -23.71752 -21.99040 -21.60254 -20.09700 -18.86562 -17.32921 -16.77715 -16.33342 -16.16117 -15.46840 -15.11863 -14.90225 -14.43413 -14.06387 -13.81589 -13.72667 -13.31108 -13.06035 -12.72484 -12.44781 -12.21247 -12.12223 -11.77462 -11.69585 -11.62050 -11.26452 -11.25013 -10.99902 -10.43434 -10.25788 -9.97828 -9.85983 -9.58731 -9.35845 -8.92233 -8.69079 -8.48544 -7.94272 -6.19696 -4.20456 2.51695 3.21311 3.30020 3.34032 3.36302 3.48371 3.61911 4.28398 4.32260 4.79877 4.88887 5.08897 5.12615 5.13095 5.17829 5.21616 5.29801 5.33414 5.44294 5.55812 5.62105 5.65811 5.73930 5.74087 5.84874 5.95449 6.13625 6.31256 6.45822 6.69824 6.80856 6.87226 6.95622 6.98697 7.10744 7.23058 7.40342 7.51289 7.77719 8.31942 8.53184 8.81382 9.41039 10.92532 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.004648 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.894036 B = 6022.807985 C = 6816.718154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.061 3.939 4 C 0.061 3.939 5 N -0.682 5.682 6 C 0.146 3.854 7 C 0.198 3.802 8 N -0.498 5.498 9 C -0.046 4.046 10 C -0.043 4.043 11 N -0.425 5.425 12 C 0.138 3.862 13 H 0.098 0.902 14 C -0.144 4.144 15 C -0.016 4.016 16 C -0.523 4.523 17 H 0.078 0.922 18 C 0.074 3.926 19 N -0.896 5.896 20 Si 0.876 3.124 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.266 1.266 24 H 0.083 0.917 25 H 0.038 0.962 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.090 0.910 31 H 0.354 0.646 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.019 0.981 40 H 0.021 0.979 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 -9.746 7.094 16.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C -0.015 4.015 4 C -0.068 4.068 5 N -0.315 5.315 6 C 0.015 3.985 7 C -0.065 4.065 8 N -0.219 5.219 9 C -0.195 4.195 10 C -0.179 4.179 11 N -0.105 5.105 12 C 0.037 3.963 13 H 0.116 0.884 14 C -0.202 4.202 15 C -0.054 4.054 16 C -0.561 4.561 17 H 0.096 0.904 18 C -0.129 4.129 19 N -0.534 5.534 20 Si 0.703 3.297 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.191 1.191 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.108 0.892 31 H 0.173 0.827 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.180 0.820 35 H 0.184 0.816 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.037 0.963 40 H 0.040 0.960 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.749 -9.573 7.283 16.815 hybrid contribution 1.064 -0.230 -0.430 1.170 sum -10.686 -9.804 6.853 16.039 Atomic orbital electron populations 1.22702 0.81075 1.02612 0.99869 1.87857 1.19717 1.28215 1.95421 1.22625 0.93452 0.84797 1.00661 1.21986 0.93197 1.00567 0.91048 1.60483 1.05471 1.30857 1.34733 1.20106 0.88485 0.99758 0.90115 1.22743 1.05739 0.87883 0.90130 1.70108 1.19853 1.14207 1.17684 1.22095 1.08651 0.97343 0.91383 1.22615 1.09585 0.88994 0.96756 1.45851 1.46851 1.08583 1.09220 1.21700 0.99543 0.74189 1.00892 0.88386 1.21994 0.97029 1.03807 0.97358 1.19925 0.90664 0.98108 0.96675 1.20878 0.98786 0.88474 1.47962 0.90379 1.24938 0.98695 0.94723 0.94516 1.69887 1.28696 1.06973 1.47810 0.86834 0.83169 0.80492 0.79194 1.20115 1.21134 1.19071 0.89801 0.94307 0.93988 0.92864 0.92111 0.94226 0.89221 0.82655 0.92367 0.89200 0.82023 0.81584 0.89461 0.92910 0.93394 0.96310 0.96042 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.44 10.22 -35.23 -0.36 -4.80 16 3 C 0.06 0.62 6.28 37.16 0.23 0.85 16 4 C 0.06 0.67 6.11 -3.82 -0.02 0.64 16 5 N -0.68 -9.20 6.49 -115.06 -0.75 -9.94 16 6 C 0.15 2.15 5.82 -4.98 -0.03 2.12 16 7 C 0.20 3.49 7.42 -155.41 -1.15 2.34 16 8 N -0.50 -9.16 11.25 -10.81 -0.12 -9.29 16 9 C -0.05 -0.77 11.87 -17.81 -0.21 -0.98 16 10 C -0.04 -0.74 10.70 -16.56 -0.18 -0.92 16 11 N -0.43 -7.74 2.61 -106.83 -0.28 -8.02 16 12 C 0.14 2.64 2.94 -67.93 -0.20 2.44 16 13 H 0.10 1.87 6.67 -51.93 -0.35 1.53 16 14 C -0.14 -2.55 9.06 37.16 0.34 -2.21 16 15 C -0.02 -0.36 3.53 -27.88 -0.10 -0.45 16 16 C -0.52 -13.80 8.96 -34.44 -0.31 -14.11 16 17 H 0.08 2.18 7.30 -52.49 -0.38 1.79 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -26.31 13.96 55.43 0.77 -25.54 16 20 Si 0.88 21.06 27.46 -169.99 -4.67 16.39 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.30 6.55 56.52 0.37 -5.93 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.35 5.09 8.28 -39.29 -0.33 4.77 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.32 7.08 -51.93 -0.37 0.95 16 34 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 35 H 0.17 2.52 8.06 -52.49 -0.42 2.09 16 36 H 0.09 1.64 6.95 -51.93 -0.36 1.28 16 37 H 0.05 0.90 7.95 -51.93 -0.41 0.49 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.02 0.42 7.51 -51.93 -0.39 0.03 16 40 H 0.02 0.51 7.21 -51.93 -0.37 0.14 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 338.56 15.07 5.10 5.10 Total: -1.00 -30.59 338.56 -7.69 -38.28 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.78 Total: 4.76 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -0.62 Total: -6.95 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.37 Total: -52.78 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.36 Total: -4.80 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.59 -7.69 -38.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695886660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.453 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds