Wall clock time and date at job start Mon Mar 30 2020 04:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99789 * 2 1 4 4 C 1.53000 * 109.46996 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47145 * 65.00253 * 4 3 2 6 6 C 1.46898 * 110.99763 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47074 * 179.97438 * 6 5 4 8 8 N 1.30502 * 125.65107 * 269.95599 * 7 6 5 9 9 C 1.34122 * 109.25741 * 180.02562 * 8 7 6 10 10 C 1.34672 * 108.02017 * 359.73374 * 9 8 7 11 11 N 1.35049 * 125.65148 * 89.98993 * 7 6 5 12 12 C 1.46498 * 126.39355 * 359.97436 * 11 7 6 13 13 H 1.08998 * 109.47646 * 359.97438 * 12 11 7 14 14 C 1.53004 * 109.46734 * 239.99412 * 12 11 7 15 15 C 1.53004 * 109.47304 * 119.99935 * 12 11 7 16 16 C 1.50701 * 109.47211 * 184.99946 * 15 12 11 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 12 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 12 19 19 N 1.31523 * 119.99908 * 179.72112 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 359.71709 * 18 16 15 21 21 H 1.48500 * 109.47210 * 90.00069 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00300 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00390 * 20 18 16 24 24 H 1.09004 * 109.47086 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47477 * 300.00033 * 1 2 3 26 26 H 1.09001 * 109.47528 * 60.00352 * 1 2 3 27 27 H 1.09001 * 109.47740 * 59.99694 * 3 2 1 28 28 H 1.08999 * 109.47532 * 300.00068 * 3 2 1 29 29 H 1.09000 * 109.47472 * 304.99670 * 4 3 2 30 30 H 1.09002 * 109.46865 * 184.99865 * 4 3 2 31 31 H 1.00901 * 110.99687 * 303.95096 * 5 4 3 32 32 H 1.08993 * 109.47715 * 59.99334 * 6 5 4 33 33 H 1.08999 * 109.46760 * 299.98898 * 6 5 4 34 34 H 1.08002 * 125.99343 * 180.02562 * 9 8 7 35 35 H 1.07998 * 126.59241 * 180.27970 * 10 9 8 36 36 H 1.09000 * 109.46939 * 180.02562 * 14 12 11 37 37 H 1.08997 * 109.47262 * 299.99923 * 14 12 11 38 38 H 1.08990 * 109.47425 * 60.00086 * 14 12 11 39 39 H 1.09000 * 109.47211 * 64.98973 * 15 12 11 40 40 H 1.09007 * 109.46376 * 304.99515 * 15 12 11 41 41 H 0.96995 * 120.00181 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9778 0.5623 -1.2543 6 6 5.4404 0.4293 -1.2889 7 6 5.8559 -0.2121 -2.5878 8 7 5.9899 -1.4936 -2.7946 9 6 6.3722 -1.6993 -4.0636 10 6 6.4735 -0.5000 -4.6678 11 7 6.1519 0.4441 -3.7304 12 6 6.1271 1.8951 -3.9309 13 1 5.8280 2.3849 -3.0043 14 6 5.1266 2.2402 -5.0358 15 6 7.5212 2.3778 -4.3364 16 6 7.5264 3.8823 -4.4231 17 1 6.6253 4.4385 -4.2107 18 6 8.6798 4.5483 -4.7797 19 7 8.6829 5.8610 -4.8607 20 14 10.2381 3.5862 -5.1476 21 1 10.2820 3.2488 -6.5931 22 1 11.4229 4.4093 -4.7952 23 1 10.2484 2.3356 -4.3469 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6885 1.8464 0.8899 28 1 1.6885 1.8464 -0.8899 29 1 3.8508 0.5686 0.8427 30 1 3.9783 2.1766 0.0902 31 1 3.5304 -0.3316 -1.3920 32 1 5.7686 -0.1921 -0.4558 33 1 5.8968 1.4159 -1.2082 34 1 6.5608 -2.6588 -4.5221 35 1 6.7566 -0.3180 -5.6940 36 1 5.1085 3.3198 -5.1853 37 1 5.4254 1.7504 -5.9625 38 1 4.1335 1.8964 -4.7470 39 1 7.7834 1.9569 -5.3071 40 1 8.2485 2.0543 -3.5917 41 1 9.4943 6.3296 -5.1112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695886660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:52 Heat of formation + Delta-G solvation = -14.107489 kcal Electronic energy + Delta-G solvation = -20517.677596 eV Core-core repulsion = 17432.654921 eV Total energy + Delta-G solvation = -3085.022675 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.01786 -39.06481 -37.30412 -36.84524 -34.62261 -32.09434 -31.88564 -29.54230 -29.35652 -27.16750 -25.81385 -25.42094 -23.17863 -22.84241 -21.55314 -20.26742 -19.15847 -17.84427 -17.50690 -17.07891 -16.64591 -16.43996 -16.12030 -15.84566 -15.40298 -15.17011 -14.91040 -14.69319 -14.57485 -14.27014 -13.81489 -13.37518 -13.21826 -13.15144 -13.02764 -12.80844 -12.68330 -12.44764 -12.16973 -12.03463 -11.91567 -11.82317 -11.46089 -10.90237 -10.80311 -10.60206 -10.39172 -9.54281 -9.22789 -8.32120 -6.36437 1.18198 1.32037 1.35858 1.44914 1.97500 2.18154 2.31613 2.90607 3.02849 3.20420 3.61926 3.81968 3.87919 4.11385 4.18817 4.30877 4.33962 4.38236 4.44287 4.51193 4.55762 4.60555 4.64133 4.78052 4.79276 4.86524 4.89258 4.90597 4.95024 5.11981 5.16643 5.26560 5.51319 5.60875 5.86894 5.93985 6.19231 6.24986 6.30968 6.38531 6.69944 7.19764 7.28030 8.83090 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.004648 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.894036 B = 6022.807985 C = 6816.718154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.417 6.417 3 C 0.064 3.936 4 C 0.060 3.940 5 N -0.686 5.686 6 C 0.149 3.851 7 C 0.190 3.810 8 N -0.518 5.518 9 C -0.049 4.049 10 C -0.056 4.056 11 N -0.433 5.433 12 C 0.149 3.851 13 H 0.095 0.905 14 C -0.135 4.135 15 C -0.007 4.007 16 C -0.520 4.520 17 H 0.052 0.948 18 C 0.018 3.982 19 N -0.940 5.940 20 Si 0.937 3.063 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.259 1.259 24 H 0.092 0.908 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.097 0.903 31 H 0.349 0.651 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.190 0.810 35 H 0.185 0.815 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.024 0.976 40 H 0.012 0.988 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.983 -11.186 7.176 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.337 6.337 3 C -0.013 4.013 4 C -0.068 4.068 5 N -0.319 5.319 6 C 0.018 3.982 7 C -0.072 4.072 8 N -0.239 5.239 9 C -0.197 4.197 10 C -0.191 4.191 11 N -0.114 5.114 12 C 0.047 3.953 13 H 0.113 0.887 14 C -0.193 4.193 15 C -0.046 4.046 16 C -0.558 4.558 17 H 0.070 0.930 18 C -0.180 4.180 19 N -0.581 5.581 20 Si 0.762 3.238 21 H -0.190 1.190 22 H -0.210 1.210 23 H -0.183 1.183 24 H 0.111 0.889 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.115 0.885 31 H 0.167 0.833 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.207 0.793 35 H 0.202 0.798 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.042 0.958 40 H 0.030 0.970 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.915 -11.036 7.366 17.833 hybrid contribution 1.020 0.201 -0.415 1.119 sum -10.895 -10.834 6.952 16.865 Atomic orbital electron populations 1.22864 0.79648 1.03532 1.00699 1.87820 1.21389 1.28875 1.95596 1.22628 0.92677 0.84625 1.01363 1.22083 0.94038 1.00713 0.90009 1.60490 1.04549 1.30508 1.36350 1.20117 0.89369 0.99495 0.89171 1.23260 1.05279 0.87939 0.90718 1.70145 1.20622 1.14500 1.18613 1.22604 1.07689 0.98507 0.90895 1.23026 1.09653 0.88906 0.97487 1.45799 1.47703 1.08035 1.09868 1.21382 0.97691 0.75061 1.01130 0.88716 1.21881 0.97397 1.02739 0.97241 1.19768 0.92690 0.95511 0.96586 1.21120 0.97687 0.90469 1.46527 0.92994 1.25745 1.02031 0.95487 0.94740 1.70014 1.29707 1.08677 1.49654 0.85859 0.79271 0.79221 0.79494 1.19026 1.21004 1.18327 0.88939 0.92851 0.93754 0.90766 0.92727 0.93802 0.88479 0.83303 0.91693 0.89388 0.79334 0.79821 0.91090 0.92145 0.92049 0.95788 0.97009 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.67 16 2 O -0.42 -8.92 10.22 -148.98 -1.52 -10.44 16 3 C 0.06 1.19 6.28 71.98 0.45 1.64 16 4 C 0.06 1.24 6.11 86.30 0.53 1.77 16 5 N -0.69 -17.87 6.49 -517.94 -3.36 -21.23 16 6 C 0.15 4.25 5.82 85.56 0.50 4.75 16 7 C 0.19 6.49 7.42 138.13 1.02 7.52 16 8 N -0.52 -18.24 11.25 -188.12 -2.12 -20.35 16 9 C -0.05 -1.53 11.87 83.53 0.99 -0.54 16 10 C -0.06 -1.79 10.70 83.09 0.89 -0.90 16 11 N -0.43 -15.12 2.61 -491.89 -1.28 -16.40 16 12 C 0.15 5.56 2.94 44.99 0.13 5.69 16 13 H 0.09 3.58 6.67 -2.39 -0.02 3.56 16 14 C -0.13 -4.63 9.06 71.98 0.65 -3.97 16 15 C -0.01 -0.33 3.53 29.85 0.11 -0.23 16 16 C -0.52 -27.54 8.96 25.60 0.23 -27.31 16 17 H 0.05 2.96 7.30 -2.91 -0.02 2.94 16 18 C 0.02 1.01 5.47 84.65 0.46 1.48 16 19 N -0.94 -55.96 13.96 21.45 0.30 -55.66 16 20 Si 0.94 42.90 27.46 68.60 1.88 44.78 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.26 -11.47 6.55 99.48 0.65 -10.82 16 24 H 0.09 1.17 8.14 -2.38 -0.02 1.16 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.35 9.75 8.28 -89.69 -0.74 9.01 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 2.52 7.08 -2.39 -0.02 2.50 16 34 H 0.19 4.66 8.06 -2.91 -0.02 4.64 16 35 H 0.18 5.07 8.06 -2.91 -0.02 5.05 16 36 H 0.07 2.67 6.95 -2.39 -0.02 2.65 16 37 H 0.06 1.96 7.95 -2.39 -0.02 1.94 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.02 1.04 7.51 -2.39 -0.02 1.02 16 40 H 0.01 0.54 7.21 -2.38 -0.02 0.52 16 41 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -64.19 338.56 1.32 -62.87 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.21 Total: 24.86 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: 7.21 Total: -8.43 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -6.46 Total: -113.65 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -1.52 Total: -10.44 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.78 kcal Total: -64.19 1.32 -62.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695886660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.766 kcal (2) G-P(sol) polarization free energy of solvation -64.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds