Wall clock time and date at job start Mon Mar 30 2020 04:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99643 * 2 1 4 4 C 1.53004 * 109.46897 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.46592 * 65.00826 * 4 3 2 6 6 C 1.46896 * 110.99873 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47317 * 179.97438 * 6 5 4 8 8 N 1.30498 * 125.65146 * 269.95600 * 7 6 5 9 9 C 1.34128 * 109.25660 * 180.02562 * 8 7 6 10 10 C 1.34669 * 108.02336 * 0.02562 * 9 8 7 11 11 N 1.35044 * 125.65011 * 89.99497 * 7 6 5 12 12 C 1.46503 * 126.39660 * 359.70746 * 11 7 6 13 13 H 1.09004 * 109.47193 * 359.97438 * 12 11 7 14 14 C 1.53000 * 109.47187 * 119.99644 * 12 11 7 15 15 C 1.52997 * 109.46923 * 239.99649 * 12 11 7 16 16 C 1.50708 * 109.46967 * 174.99881 * 15 12 11 17 17 H 1.07990 * 120.00176 * 0.02562 * 16 15 12 18 18 C 1.37877 * 119.99718 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99840 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00170 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47140 * 90.00197 * 20 18 16 22 22 H 1.48504 * 109.47364 * 210.00016 * 20 18 16 23 23 H 1.48497 * 109.47369 * 330.00175 * 20 18 16 24 24 H 1.08997 * 109.47079 * 299.98989 * 1 2 3 25 25 H 1.09000 * 109.47656 * 59.99290 * 1 2 3 26 26 H 1.09007 * 109.46639 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46480 * 60.01093 * 3 2 1 28 28 H 1.08993 * 109.47670 * 300.00679 * 3 2 1 29 29 H 1.08991 * 109.47357 * 305.01208 * 4 3 2 30 30 H 1.08997 * 109.47232 * 184.99828 * 4 3 2 31 31 H 1.00897 * 110.99926 * 303.94924 * 5 4 3 32 32 H 1.08993 * 109.47461 * 59.99396 * 6 5 4 33 33 H 1.09011 * 109.47020 * 299.99537 * 6 5 4 34 34 H 1.07998 * 125.98727 * 179.97438 * 9 8 7 35 35 H 1.07996 * 126.59301 * 180.02562 * 10 9 8 36 36 H 1.08996 * 109.46977 * 60.00331 * 14 12 11 37 37 H 1.09005 * 109.46724 * 179.97438 * 14 12 11 38 38 H 1.08994 * 109.47192 * 299.99847 * 14 12 11 39 39 H 1.08994 * 109.47742 * 294.99788 * 15 12 11 40 40 H 1.09004 * 109.47407 * 55.00339 * 15 12 11 41 41 H 0.96999 * 119.99995 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9768 0.5630 -1.2563 6 6 5.4393 0.4300 -1.2923 7 6 5.8536 -0.2108 -2.5918 8 7 5.9874 -1.4922 -2.7993 9 6 6.3687 -1.6973 -4.0688 10 6 6.4757 -0.4974 -4.6708 11 7 6.1487 0.4459 -3.7343 12 6 6.1187 1.8967 -3.9357 13 1 5.8163 2.3859 -3.0097 14 6 7.5115 2.3845 -4.3394 15 6 5.1184 2.2374 -5.0421 16 6 4.9963 3.7345 -5.1653 17 1 5.5746 4.3784 -4.5195 18 6 4.1462 4.2819 -6.1027 19 7 4.0401 5.5884 -6.2106 20 14 3.1465 3.1681 -7.2204 21 1 1.8420 2.8649 -6.5787 22 1 2.9127 3.8503 -8.5186 23 1 3.8897 1.9036 -7.4525 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.6886 1.8462 0.8901 28 1 1.6885 1.8465 -0.8898 29 1 3.8515 0.5682 0.8407 30 1 3.9785 2.1766 0.0889 31 1 3.5293 -0.3308 -1.3941 32 1 5.7682 -0.1919 -0.4598 33 1 5.8959 1.4165 -1.2114 34 1 6.5575 -2.6566 -4.5276 35 1 6.7632 -0.3146 -5.6956 36 1 7.8134 1.8954 -5.2654 37 1 7.4890 3.4639 -4.4896 38 1 8.2241 2.1418 -3.5511 39 1 5.4671 1.8223 -5.9877 40 1 4.1453 1.8126 -4.7956 41 1 3.4417 5.9735 -6.8698 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695886663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:57 Heat of formation + Delta-G solvation = 7.082709 kcal Electronic energy + Delta-G solvation = -20718.472971 eV Core-core repulsion = 17634.369171 eV Total energy + Delta-G solvation = -3084.103799 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.66812 -38.15057 -35.78704 -35.68488 -32.60498 -30.99580 -30.26709 -28.41079 -27.64816 -26.32436 -24.65607 -23.68013 -21.91430 -21.58776 -20.09623 -18.85499 -17.31002 -16.67372 -16.24285 -16.10651 -15.39099 -15.09887 -14.84773 -14.35335 -13.97935 -13.86803 -13.72399 -13.29401 -13.04759 -12.65821 -12.37599 -12.21123 -12.12900 -11.74687 -11.65947 -11.57103 -11.20068 -11.15620 -10.96198 -10.46796 -10.26488 -9.91088 -9.73652 -9.57784 -9.32867 -8.92611 -8.64705 -8.38466 -7.93925 -6.16267 -4.16115 2.51109 3.25416 3.32852 3.36781 3.37526 3.48077 3.73222 4.35354 4.36024 4.80865 4.98479 5.13642 5.16585 5.23715 5.25995 5.31600 5.33488 5.38741 5.55229 5.57134 5.58138 5.71021 5.74187 5.83039 5.83821 5.91610 6.12605 6.28038 6.44375 6.64945 6.83414 6.95957 7.02104 7.08794 7.15016 7.25119 7.48493 7.55216 7.78473 8.35237 8.53053 8.84443 9.45034 10.96078 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.006613 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.770948 B = 4232.964688 C = 5579.828126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.394 6.394 3 C 0.060 3.940 4 C 0.064 3.936 5 N -0.680 5.680 6 C 0.149 3.851 7 C 0.197 3.803 8 N -0.498 5.498 9 C -0.046 4.046 10 C -0.043 4.043 11 N -0.425 5.425 12 C 0.137 3.863 13 H 0.098 0.902 14 C -0.148 4.148 15 C -0.012 4.012 16 C -0.519 4.519 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.898 5.898 20 Si 0.877 3.123 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 H 0.038 0.962 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.037 0.963 30 H 0.089 0.911 31 H 0.355 0.645 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.021 0.979 40 H 0.022 0.978 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 -9.110 10.350 13.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.313 6.313 3 C -0.017 4.017 4 C -0.065 4.065 5 N -0.314 5.314 6 C 0.019 3.981 7 C -0.066 4.066 8 N -0.218 5.218 9 C -0.195 4.195 10 C -0.179 4.179 11 N -0.105 5.105 12 C 0.036 3.964 13 H 0.116 0.884 14 C -0.206 4.206 15 C -0.050 4.050 16 C -0.557 4.557 17 H 0.095 0.905 18 C -0.129 4.129 19 N -0.536 5.536 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.175 0.825 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.180 0.820 35 H 0.184 0.816 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.039 0.961 40 H 0.041 0.959 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.674 -8.952 10.477 13.798 hybrid contribution -0.594 -0.321 -0.876 1.106 sum -1.269 -9.274 9.601 13.409 Atomic orbital electron populations 1.22701 0.81069 1.02541 0.99952 1.87838 1.19746 1.28271 1.95450 1.22639 0.93400 0.84796 1.00872 1.21959 0.93372 1.00377 0.90789 1.60441 1.05205 1.30967 1.34750 1.20064 0.88852 0.99269 0.89964 1.22771 1.05753 0.87911 0.90140 1.70109 1.19780 1.14185 1.17761 1.22096 1.08631 0.97311 0.91444 1.22619 1.09610 0.89031 0.96649 1.45856 1.46825 1.08640 1.09217 1.21705 0.97999 0.74184 1.02498 0.88393 1.22058 0.94296 1.03765 1.00474 1.19870 0.93874 0.98520 0.92757 1.20865 1.25984 0.88796 1.20088 0.90524 1.24921 0.96267 0.94827 0.96846 1.69889 1.38015 1.10169 1.35508 0.86823 0.81120 0.81251 0.80379 1.20163 1.21276 1.19108 0.94343 0.93865 0.89857 0.92898 0.91767 0.94433 0.89321 0.82546 0.92534 0.89625 0.82024 0.81585 0.92650 0.89255 0.93867 0.96114 0.95940 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.09 10.22 -35.23 -0.36 -5.45 16 3 C 0.06 0.71 6.28 37.16 0.23 0.94 16 4 C 0.06 0.77 6.11 -3.82 -0.02 0.75 16 5 N -0.68 -10.13 6.49 -115.06 -0.75 -10.87 16 6 C 0.15 2.19 5.82 -4.98 -0.03 2.16 16 7 C 0.20 3.47 7.41 -155.42 -1.15 2.32 16 8 N -0.50 -9.14 11.25 -10.82 -0.12 -9.27 16 9 C -0.05 -0.77 11.87 -17.81 -0.21 -0.98 16 10 C -0.04 -0.74 10.70 -16.56 -0.18 -0.91 16 11 N -0.43 -7.73 2.61 -106.83 -0.28 -8.01 16 12 C 0.14 2.62 2.94 -67.93 -0.20 2.42 16 13 H 0.10 1.87 6.68 -51.93 -0.35 1.52 16 14 C -0.15 -2.55 9.07 37.16 0.34 -2.21 16 15 C -0.01 -0.28 3.52 -27.88 -0.10 -0.38 16 16 C -0.52 -13.80 8.96 -34.44 -0.31 -14.11 16 17 H 0.08 2.14 7.30 -52.49 -0.38 1.76 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -26.54 13.96 55.43 0.77 -25.76 16 20 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.33 6.54 56.52 0.37 -5.97 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.36 5.64 8.28 -39.29 -0.33 5.31 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.18 7.09 -51.92 -0.37 0.81 16 34 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 35 H 0.17 2.54 8.06 -52.49 -0.42 2.12 16 36 H 0.05 0.92 7.96 -51.93 -0.41 0.51 16 37 H 0.09 1.64 6.95 -51.93 -0.36 1.28 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.02 0.48 7.14 -51.93 -0.37 0.11 16 40 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 338.56 15.07 5.10 5.10 Total: -1.00 -31.01 338.56 -7.69 -38.70 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.78 Total: 5.42 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -0.61 Total: -6.60 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.37 Total: -53.92 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.36 Total: -5.45 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.01 -7.69 -38.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695886663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.783 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds