Wall clock time and date at job start Mon Mar 30 2020 04:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99643 * 2 1 4 4 C 1.53004 * 109.46897 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.46592 * 65.00826 * 4 3 2 6 6 C 1.46896 * 110.99873 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47317 * 179.97438 * 6 5 4 8 8 N 1.30498 * 125.65146 * 269.95600 * 7 6 5 9 9 C 1.34128 * 109.25660 * 180.02562 * 8 7 6 10 10 C 1.34669 * 108.02336 * 0.02562 * 9 8 7 11 11 N 1.35044 * 125.65011 * 89.99497 * 7 6 5 12 12 C 1.46503 * 126.39660 * 359.70746 * 11 7 6 13 13 H 1.09004 * 109.47193 * 359.97438 * 12 11 7 14 14 C 1.53000 * 109.47187 * 119.99644 * 12 11 7 15 15 C 1.52997 * 109.46923 * 239.99649 * 12 11 7 16 16 C 1.50708 * 109.46967 * 174.99881 * 15 12 11 17 17 H 1.07990 * 120.00176 * 0.02562 * 16 15 12 18 18 C 1.37877 * 119.99718 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99840 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00170 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47140 * 90.00197 * 20 18 16 22 22 H 1.48504 * 109.47364 * 210.00016 * 20 18 16 23 23 H 1.48497 * 109.47369 * 330.00175 * 20 18 16 24 24 H 1.08997 * 109.47079 * 299.98989 * 1 2 3 25 25 H 1.09000 * 109.47656 * 59.99290 * 1 2 3 26 26 H 1.09007 * 109.46639 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46480 * 60.01093 * 3 2 1 28 28 H 1.08993 * 109.47670 * 300.00679 * 3 2 1 29 29 H 1.08991 * 109.47357 * 305.01208 * 4 3 2 30 30 H 1.08997 * 109.47232 * 184.99828 * 4 3 2 31 31 H 1.00897 * 110.99926 * 303.94924 * 5 4 3 32 32 H 1.08993 * 109.47461 * 59.99396 * 6 5 4 33 33 H 1.09011 * 109.47020 * 299.99537 * 6 5 4 34 34 H 1.07998 * 125.98727 * 179.97438 * 9 8 7 35 35 H 1.07996 * 126.59301 * 180.02562 * 10 9 8 36 36 H 1.08996 * 109.46977 * 60.00331 * 14 12 11 37 37 H 1.09005 * 109.46724 * 179.97438 * 14 12 11 38 38 H 1.08994 * 109.47192 * 299.99847 * 14 12 11 39 39 H 1.08994 * 109.47742 * 294.99788 * 15 12 11 40 40 H 1.09004 * 109.47407 * 55.00339 * 15 12 11 41 41 H 0.96999 * 119.99995 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9768 0.5630 -1.2563 6 6 5.4393 0.4300 -1.2923 7 6 5.8536 -0.2108 -2.5918 8 7 5.9874 -1.4922 -2.7993 9 6 6.3687 -1.6973 -4.0688 10 6 6.4757 -0.4974 -4.6708 11 7 6.1487 0.4459 -3.7343 12 6 6.1187 1.8967 -3.9357 13 1 5.8163 2.3859 -3.0097 14 6 7.5115 2.3845 -4.3394 15 6 5.1184 2.2374 -5.0421 16 6 4.9963 3.7345 -5.1653 17 1 5.5746 4.3784 -4.5195 18 6 4.1462 4.2819 -6.1027 19 7 4.0401 5.5884 -6.2106 20 14 3.1465 3.1681 -7.2204 21 1 1.8420 2.8649 -6.5787 22 1 2.9127 3.8503 -8.5186 23 1 3.8897 1.9036 -7.4525 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.6886 1.8462 0.8901 28 1 1.6885 1.8465 -0.8898 29 1 3.8515 0.5682 0.8407 30 1 3.9785 2.1766 0.0889 31 1 3.5293 -0.3308 -1.3941 32 1 5.7682 -0.1919 -0.4598 33 1 5.8959 1.4165 -1.2114 34 1 6.5575 -2.6566 -4.5276 35 1 6.7632 -0.3146 -5.6956 36 1 7.8134 1.8954 -5.2654 37 1 7.4890 3.4639 -4.4896 38 1 8.2241 2.1418 -3.5511 39 1 5.4671 1.8223 -5.9877 40 1 4.1453 1.8126 -4.7956 41 1 3.4417 5.9735 -6.8698 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695886663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:56 Heat of formation + Delta-G solvation = -13.666966 kcal Electronic energy + Delta-G solvation = -20719.372744 eV Core-core repulsion = 17634.369171 eV Total energy + Delta-G solvation = -3085.003573 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.01324 -39.07766 -37.29355 -36.84522 -34.61260 -32.09376 -31.87545 -29.56627 -29.34007 -27.19031 -25.85162 -25.36461 -23.18959 -22.84645 -21.55001 -20.25949 -19.15339 -17.84256 -17.50485 -17.11463 -16.56455 -16.51558 -16.11381 -15.81994 -15.42678 -15.13423 -15.00019 -14.60201 -14.59379 -14.26424 -13.89154 -13.35091 -13.27133 -13.12004 -13.00874 -12.77737 -12.65918 -12.46293 -12.14218 -12.05020 -12.04656 -11.75355 -11.43456 -10.89825 -10.79740 -10.62952 -10.38585 -9.50037 -9.22125 -8.31391 -6.34349 1.17499 1.31727 1.34669 1.43564 1.99144 2.17976 2.31913 2.88362 3.04185 3.24208 3.61436 3.82247 3.88665 4.10381 4.16779 4.31119 4.34905 4.38275 4.44068 4.49182 4.53341 4.58253 4.63430 4.77705 4.78307 4.86790 4.87532 4.90078 4.93670 5.13976 5.19597 5.26716 5.53261 5.61532 5.90058 5.95826 6.20269 6.22085 6.31063 6.39181 6.71139 7.20091 7.29663 8.83819 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.006613 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.770948 B = 4232.964688 C = 5579.828126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.416 6.416 3 C 0.061 3.939 4 C 0.065 3.935 5 N -0.695 5.695 6 C 0.151 3.849 7 C 0.190 3.810 8 N -0.518 5.518 9 C -0.049 4.049 10 C -0.056 4.056 11 N -0.434 5.434 12 C 0.148 3.852 13 H 0.096 0.904 14 C -0.140 4.140 15 C -0.003 4.003 16 C -0.514 4.514 17 H 0.053 0.947 18 C 0.019 3.981 19 N -0.941 5.941 20 Si 0.934 3.066 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.254 1.254 24 H 0.056 0.944 25 H 0.038 0.962 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.347 0.653 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.189 0.811 35 H 0.183 0.817 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.022 0.978 40 H 0.007 0.993 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 -10.517 10.727 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.335 6.335 3 C -0.016 4.016 4 C -0.064 4.064 5 N -0.328 5.328 6 C 0.021 3.979 7 C -0.072 4.072 8 N -0.238 5.238 9 C -0.197 4.197 10 C -0.191 4.191 11 N -0.114 5.114 12 C 0.046 3.954 13 H 0.114 0.886 14 C -0.198 4.198 15 C -0.041 4.041 16 C -0.553 4.553 17 H 0.071 0.929 18 C -0.179 4.179 19 N -0.581 5.581 20 Si 0.759 3.241 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.178 1.178 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.165 0.835 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.206 0.794 35 H 0.200 0.800 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.040 0.960 40 H 0.026 0.974 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.541 -10.379 10.861 15.033 hybrid contribution -0.628 0.103 -0.927 1.124 sum -1.169 -10.277 9.934 14.341 Atomic orbital electron populations 1.22866 0.79744 1.03584 1.00580 1.87806 1.21322 1.28831 1.95580 1.22658 0.93271 0.84599 1.01084 1.22048 0.93594 1.00793 0.89967 1.60462 1.05216 1.30570 1.36600 1.20144 0.88934 0.99715 0.89141 1.23310 1.05145 0.87933 0.90808 1.70147 1.20521 1.14514 1.18667 1.22596 1.07675 0.98435 0.90989 1.23004 1.09773 0.88996 0.97325 1.45805 1.47628 1.08107 1.09876 1.21397 0.97908 0.75171 1.00918 0.88640 1.21958 0.93670 1.02563 1.01579 1.19697 0.94328 0.95787 0.94313 1.21110 1.24707 0.90590 1.18853 0.92872 1.25696 0.97646 0.95953 0.98593 1.70007 1.39389 1.11915 1.36783 0.85910 0.79619 0.79929 0.78665 1.20151 1.20761 1.17800 0.92582 0.94341 0.88703 0.90502 0.93662 0.93245 0.88363 0.83482 0.91257 0.88857 0.79390 0.79996 0.92066 0.90879 0.91611 0.95951 0.97436 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.42 -10.33 10.22 -148.98 -1.52 -11.86 16 3 C 0.06 1.37 6.28 71.98 0.45 1.82 16 4 C 0.06 1.47 6.11 86.30 0.53 1.99 16 5 N -0.70 -20.10 6.49 -517.93 -3.36 -23.46 16 6 C 0.15 4.23 5.82 85.56 0.50 4.73 16 7 C 0.19 6.44 7.41 138.13 1.02 7.46 16 8 N -0.52 -18.14 11.25 -188.13 -2.12 -20.25 16 9 C -0.05 -1.53 11.87 83.52 0.99 -0.54 16 10 C -0.06 -1.81 10.70 83.09 0.89 -0.92 16 11 N -0.43 -15.05 2.61 -491.90 -1.28 -16.33 16 12 C 0.15 5.48 2.94 44.99 0.13 5.61 16 13 H 0.10 3.57 6.68 -2.38 -0.02 3.55 16 14 C -0.14 -4.61 9.07 71.98 0.65 -3.96 16 15 C 0.00 -0.14 3.52 29.85 0.11 -0.04 16 16 C -0.51 -27.47 8.96 25.60 0.23 -27.24 16 17 H 0.05 3.03 7.30 -2.92 -0.02 3.01 16 18 C 0.02 1.08 5.47 84.65 0.46 1.54 16 19 N -0.94 -56.35 13.96 21.45 0.30 -56.05 16 20 Si 0.93 43.82 27.47 68.60 1.88 45.70 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.25 -11.31 6.54 99.48 0.65 -10.65 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.35 10.84 8.28 -89.70 -0.74 10.09 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 2.44 7.09 -2.38 -0.02 2.42 16 34 H 0.19 4.67 8.06 -2.91 -0.02 4.65 16 35 H 0.18 5.11 8.06 -2.91 -0.02 5.09 16 36 H 0.06 1.93 7.96 -2.39 -0.02 1.91 16 37 H 0.07 2.65 6.95 -2.38 -0.02 2.63 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.02 1.00 7.14 -2.39 -0.02 0.98 16 40 H 0.01 0.35 7.57 -2.39 -0.02 0.34 16 41 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -65.37 338.56 1.32 -64.06 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.20 Total: 25.96 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 7.21 Total: -7.76 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -6.46 Total: -116.10 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -1.52 Total: -11.86 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Total: -65.37 1.32 -64.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695886663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.392 kcal (2) G-P(sol) polarization free energy of solvation -65.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds