Wall clock time and date at job start Mon Mar 30 2020 04:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46508 * 109.47103 * 2 1 4 4 C 1.46757 * 124.34855 * 270.00047 * 3 2 1 5 5 C 1.54479 * 105.47411 * 196.99119 * 4 3 2 6 6 C 1.54623 * 101.76462 * 334.58671 * 5 4 3 7 7 H 1.08994 * 110.48761 * 266.11477 * 6 5 4 8 8 N 1.46903 * 110.48540 * 143.47242 * 6 5 4 9 9 C 1.46902 * 111.00029 * 69.85884 * 8 6 5 10 10 C 1.53241 * 109.33929 * 172.74516 * 9 8 6 11 11 N 1.47083 * 108.52101 * 53.82861 * 10 9 8 12 12 C 1.36933 * 120.87877 * 128.79254 * 11 10 9 13 13 H 1.07999 * 119.99888 * 206.64345 * 12 11 10 14 14 C 1.38812 * 120.00113 * 26.64669 * 12 11 10 15 15 N 1.31616 * 120.00109 * 17.11405 * 14 12 11 16 16 Si 1.86804 * 119.99964 * 197.11871 * 14 12 11 17 17 H 1.48501 * 109.47160 * 84.91660 * 16 14 12 18 18 H 1.48495 * 109.46946 * 204.91920 * 16 14 12 19 19 H 1.48504 * 109.47161 * 324.91685 * 16 14 12 20 20 C 1.47079 * 118.23842 * 308.81618 * 11 10 9 21 21 C 1.46899 * 111.00061 * 305.55538 * 8 6 5 22 22 C 1.34414 * 124.34867 * 89.97814 * 3 2 1 23 23 O 1.21288 * 124.94256 * 359.34364 * 22 3 2 24 24 H 1.09000 * 109.47369 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47141 * 299.99624 * 1 2 3 26 26 H 1.08995 * 109.47738 * 60.00154 * 1 2 3 27 27 H 1.08995 * 109.47256 * 240.00295 * 2 1 3 28 28 H 1.08995 * 109.47738 * 119.99846 * 2 1 3 29 29 H 1.08998 * 110.25153 * 315.99585 * 4 3 2 30 30 H 1.09001 * 110.24607 * 77.99294 * 4 3 2 31 31 H 1.09007 * 110.96672 * 92.70245 * 5 4 3 32 32 H 1.08995 * 110.97393 * 216.42864 * 5 4 3 33 33 H 1.08999 * 109.48956 * 292.70207 * 9 8 6 34 34 H 1.09003 * 109.48777 * 52.78449 * 9 8 6 35 35 H 1.09003 * 109.62696 * 294.11882 * 10 9 8 36 36 H 1.09002 * 109.62841 * 173.53823 * 10 9 8 37 37 H 0.97003 * 119.99973 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.62849 * 291.47318 * 20 11 10 39 39 H 1.08995 * 109.63191 * 170.89510 * 20 11 10 40 40 H 1.09002 * 109.49118 * 307.21249 * 21 8 6 41 41 H 1.08995 * 109.49361 * 67.29238 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 -1.2117 5 6 3.1738 3.3445 -0.7486 6 6 2.7685 3.4758 0.7378 7 1 1.9733 4.2123 0.8528 8 7 3.9316 3.8408 1.5575 9 6 4.3570 5.2199 1.2832 10 6 5.4494 5.6218 2.2799 11 7 6.5228 4.6176 2.2266 12 6 7.8290 4.9933 2.0601 13 1 8.5326 4.3127 1.6038 14 6 8.2488 6.2487 2.4778 15 7 7.5127 6.9423 3.3200 16 14 9.8584 6.9539 1.8443 17 1 9.6266 7.6209 0.5379 18 1 10.3829 7.9436 2.8192 19 1 10.8454 5.8578 1.6721 20 6 6.1559 3.1992 2.3565 21 6 5.0356 2.8927 1.3568 22 6 2.2707 2.0965 1.1097 23 8 2.1166 1.6961 2.2442 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.8326 1.5533 -1.9382 30 1 1.3636 2.5305 -1.6431 31 1 4.2327 3.1040 -0.8444 32 1 2.9304 4.2517 -1.3015 33 1 4.7491 5.2845 0.2682 34 1 3.5044 5.8910 1.3877 35 1 5.0317 5.6582 3.2860 36 1 5.8490 6.5995 2.0106 37 1 7.8059 7.8198 3.6116 38 1 5.8061 3.0028 3.3700 39 1 7.0224 2.5753 2.1379 40 1 4.6753 1.8762 1.5147 41 1 5.4182 2.9897 0.3408 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696589236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:36 Heat of formation + Delta-G solvation = -13.027461 kcal Electronic energy + Delta-G solvation = -21518.877879 eV Core-core repulsion = 18433.902037 eV Total energy + Delta-G solvation = -3084.975842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.82776 -39.31636 -37.45692 -36.32691 -34.12189 -32.84404 -31.63413 -30.02596 -28.90435 -26.97554 -24.82925 -24.34694 -24.27546 -22.62952 -20.58377 -20.17245 -18.67697 -17.78833 -17.59631 -17.06113 -16.52163 -15.80829 -15.56939 -15.48910 -15.33995 -14.99927 -14.82549 -14.49536 -14.37530 -14.29837 -13.76682 -13.29845 -13.12662 -12.98176 -12.82302 -12.72385 -12.60309 -12.37164 -12.36349 -12.05549 -11.98187 -11.76169 -11.63694 -11.44351 -10.75131 -10.58573 -9.70682 -9.22065 -8.69679 -7.87220 -5.33143 1.48782 1.49497 1.52187 1.58863 2.01676 2.51463 2.90361 3.27706 3.38876 3.63446 3.71541 3.91491 4.01308 4.13709 4.24734 4.27275 4.28904 4.47631 4.49845 4.52406 4.63019 4.67964 4.69306 4.82048 4.84791 4.94120 4.96272 5.01084 5.04714 5.20381 5.28194 5.33812 5.60809 5.65778 5.67971 6.02666 6.11911 6.21686 6.36576 7.12612 7.21102 7.81579 8.37751 9.19912 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.042971 B = 0.004460 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.444471 B = 6276.844629 C = 6337.932263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.116 3.884 3 N -0.619 5.619 4 C 0.111 3.889 5 C -0.163 4.163 6 C 0.050 3.950 7 H 0.123 0.877 8 N -0.532 5.532 9 C 0.056 3.944 10 C 0.184 3.816 11 N -0.610 5.610 12 C -0.267 4.267 13 H 0.069 0.931 14 C -0.050 4.050 15 N -0.937 5.937 16 Si 0.973 3.027 17 H -0.280 1.280 18 H -0.296 1.296 19 H -0.270 1.270 20 C 0.146 3.854 21 C 0.063 3.937 22 C 0.516 3.484 23 O -0.567 6.567 24 H 0.084 0.916 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.040 0.960 34 H 0.085 0.915 35 H -0.010 1.010 36 H 0.064 0.936 37 H 0.251 0.749 38 H 0.002 0.998 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.231 -10.278 -15.003 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.005 4.005 3 N -0.353 5.353 4 C -0.011 4.011 5 C -0.203 4.203 6 C -0.062 4.062 7 H 0.141 0.859 8 N -0.257 5.257 9 C -0.072 4.072 10 C 0.058 3.942 11 N -0.334 5.334 12 C -0.397 4.397 13 H 0.087 0.913 14 C -0.245 4.245 15 N -0.583 5.583 16 Si 0.801 3.199 17 H -0.206 1.206 18 H -0.223 1.223 19 H -0.195 1.195 20 C 0.020 3.980 21 C -0.066 4.066 22 C 0.304 3.696 23 O -0.445 6.445 24 H 0.103 0.897 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.128 0.872 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.132 0.868 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.008 0.992 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.020 0.980 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.426 -10.467 -13.848 21.944 hybrid contribution 1.079 0.608 -0.214 1.257 sum -12.346 -9.858 -14.061 21.150 Atomic orbital electron populations 1.22095 0.94889 1.03236 1.01741 1.21519 0.95096 0.80254 1.03592 1.48472 1.65246 1.14273 1.07341 1.22234 1.00416 0.92081 0.86392 1.23317 1.01213 1.00812 0.94927 1.22578 0.95396 0.95441 0.92791 0.85914 1.61772 1.05965 1.03117 1.54797 1.22591 0.98233 0.88256 0.98137 1.20672 0.86468 0.92985 0.94109 1.44391 1.03192 1.01011 1.84834 1.19555 0.87164 1.00433 1.32519 0.91292 1.25836 1.01419 0.99769 0.97499 1.70210 1.41058 1.13396 1.33598 0.85207 0.79430 0.77914 0.77390 1.20602 1.22291 1.19524 1.21054 0.95318 0.86188 0.95470 1.22368 0.91415 0.94593 0.98207 1.20979 0.76426 0.87903 0.84336 1.90673 1.54564 1.75946 1.23310 0.89719 0.94935 0.90996 0.87186 0.92271 0.88073 0.88511 0.90406 0.86843 0.94180 0.89690 0.99153 0.91757 0.93997 0.98047 0.91981 0.92091 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 10.24 71.98 0.74 -1.61 16 2 C 0.12 1.97 6.65 86.37 0.57 2.55 16 3 N -0.62 -13.06 2.93 -818.01 -2.40 -15.46 16 4 C 0.11 1.52 7.35 86.83 0.64 2.15 16 5 C -0.16 -3.09 5.83 31.65 0.18 -2.90 16 6 C 0.05 1.38 3.02 44.91 0.14 1.52 16 7 H 0.12 3.10 8.06 -2.39 -0.02 3.08 16 8 N -0.53 -19.55 4.63 -870.05 -4.03 -23.58 16 9 C 0.06 2.14 5.35 86.38 0.46 2.60 16 10 C 0.18 9.25 5.42 86.35 0.47 9.72 16 11 N -0.61 -32.20 3.04 -698.12 -2.12 -34.32 16 12 C -0.27 -14.99 9.63 84.03 0.81 -14.18 16 13 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 14 C -0.05 -2.82 4.93 84.86 0.42 -2.40 16 15 N -0.94 -56.41 11.16 21.65 0.24 -56.17 16 16 Si 0.97 44.91 29.59 68.60 2.03 46.94 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 C 0.15 6.71 6.69 86.35 0.58 7.28 16 21 C 0.06 2.37 4.88 86.38 0.42 2.79 16 22 C 0.52 15.84 6.11 87.90 0.54 16.37 16 23 O -0.57 -23.13 17.59 -3.05 -0.05 -23.18 16 24 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 25 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.28 7.93 -2.39 -0.02 1.26 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 1.73 5.59 -2.38 -0.01 1.72 16 32 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.04 1.44 7.70 -2.39 -0.02 1.42 16 34 H 0.08 2.82 8.05 -2.39 -0.02 2.80 16 35 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 36 H 0.06 3.54 6.13 -2.39 -0.01 3.53 16 37 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 39 H 0.06 2.70 7.95 -2.39 -0.02 2.68 16 40 H 0.06 2.25 6.92 -2.39 -0.02 2.23 16 41 H 0.05 1.64 6.14 -2.39 -0.01 1.62 16 Total: -1.00 -74.37 320.30 0.63 -73.74 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.00 Total: 8.12 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 5.96 Total: 23.90 kcal Atomic # 7 Polarization: -121.22 SS G_CDS: -8.31 Total: -129.52 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.05 Total: -23.18 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -74.37 0.63 -73.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696589236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.717 kcal (2) G-P(sol) polarization free energy of solvation -74.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds