Wall clock time and date at job start Mon Mar 30 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46956 * 111.00293 * 2 1 4 4 C 1.53056 * 109.38342 * 183.17592 * 3 2 1 5 5 N 1.46963 * 109.35944 * 301.62902 * 4 3 2 6 6 C 1.46903 * 110.99595 * 183.16796 * 5 4 3 7 7 C 1.53930 * 113.73165 * 154.94575 * 6 5 4 8 8 N 1.48186 * 86.10135 * 221.95560 * 7 6 5 9 9 C 1.46902 * 111.07242 * 137.52155 * 8 7 6 10 10 C 1.52999 * 109.46891 * 70.56928 * 9 8 7 11 11 C 1.53000 * 109.46676 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.46976 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99728 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99756 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00123 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99528 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46802 * 89.99871 * 16 14 12 18 18 H 1.48498 * 109.46955 * 209.99762 * 16 14 12 19 19 H 1.48499 * 109.47181 * 330.00239 * 16 14 12 20 20 C 1.47962 * 90.79916 * 24.59939 * 8 7 6 21 21 C 1.46956 * 110.89784 * 59.28921 * 5 4 3 22 22 C 1.46962 * 110.99604 * 123.79812 * 2 1 3 23 23 H 1.09006 * 109.46670 * 60.00118 * 1 2 3 24 24 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47127 * 300.00706 * 1 2 3 26 26 H 1.09002 * 109.48806 * 303.15319 * 3 2 1 27 27 H 1.09002 * 109.49141 * 63.19591 * 3 2 1 28 28 H 1.08992 * 109.49038 * 61.57437 * 4 3 2 29 29 H 1.08994 * 109.48641 * 181.64718 * 4 3 2 30 30 H 1.09006 * 112.93775 * 286.51165 * 6 5 4 31 31 H 1.08998 * 113.76189 * 336.23756 * 7 6 5 32 32 H 1.09006 * 113.75970 * 107.60268 * 7 6 5 33 33 H 1.09002 * 109.47358 * 190.56791 * 9 8 7 34 34 H 1.08998 * 109.46688 * 310.56905 * 9 8 7 35 35 H 1.09001 * 109.46974 * 299.99526 * 10 9 8 36 36 H 1.08998 * 109.47474 * 60.00458 * 10 9 8 37 37 H 1.09002 * 109.47190 * 299.99628 * 11 10 9 38 38 H 1.08998 * 109.47967 * 60.00047 * 11 10 9 39 39 H 0.96999 * 119.99625 * 180.02562 * 15 14 12 40 40 H 1.08997 * 113.76261 * 221.08382 * 20 8 7 41 41 H 1.09007 * 113.85793 * 89.73139 * 20 8 7 42 42 H 1.09002 * 109.48806 * 180.71933 * 21 5 4 43 43 H 1.09003 * 109.49203 * 60.65575 * 21 5 4 44 44 H 1.09001 * 109.48625 * 296.77747 * 22 2 1 45 45 H 1.09003 * 109.48941 * 56.82355 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3295 -0.0800 5 7 4.0501 0.5658 1.0599 6 6 5.5191 0.5658 1.0600 7 6 6.1385 0.3510 2.4527 8 7 7.1045 1.4093 2.0749 9 6 7.3349 2.3368 3.1906 10 6 8.1341 1.6282 4.2861 11 6 8.3735 2.5941 5.4483 12 6 9.1612 1.8964 6.5271 13 1 9.4607 0.8669 6.3970 14 6 9.4995 2.5723 7.6803 15 7 9.1353 3.8260 7.8384 16 14 10.4753 1.7072 9.0178 17 1 11.9274 1.9002 8.7745 18 1 10.1150 2.2774 10.3408 19 1 10.1592 0.2563 9.0013 20 6 6.1387 1.9741 1.1067 21 6 3.5234 -0.8061 1.0599 22 6 1.9956 -0.7632 1.1402 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.6014 1.9128 -0.8603 27 1 1.6935 1.8775 0.9171 28 1 3.8258 0.8485 -1.0102 29 1 3.9176 2.3453 -0.0506 30 1 5.9439 -0.0751 0.2873 31 1 5.4794 0.6311 3.2745 32 1 6.5914 -0.6316 2.5852 33 1 7.8946 3.2018 2.8344 34 1 6.3770 2.6649 3.5940 35 1 7.5744 0.7634 4.6423 36 1 9.0920 1.3002 3.8826 37 1 8.9330 3.4592 5.0924 38 1 7.4155 2.9218 5.8518 39 1 9.3737 4.3016 8.6495 40 1 6.5917 2.2860 0.1656 41 1 5.4789 2.7303 1.5321 42 1 3.9176 -1.3470 1.9202 43 1 3.8253 -1.3116 0.1426 44 1 1.6936 -0.2820 2.0704 45 1 1.6009 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697763048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:16 Heat of formation + Delta-G solvation = 37.982724 kcal Electronic energy + Delta-G solvation = -20555.145184 eV Core-core repulsion = 17608.214405 eV Total energy + Delta-G solvation = -2946.930780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.30787 -38.68099 -35.22825 -33.82378 -31.82719 -31.22897 -29.15061 -27.42815 -26.20279 -24.94783 -23.73040 -23.53524 -21.85281 -20.16722 -19.83774 -19.54811 -16.89832 -16.19679 -15.74374 -15.43443 -15.23217 -15.12911 -14.94921 -14.49210 -14.43050 -13.91802 -13.43197 -13.08769 -12.78672 -12.51219 -12.40883 -12.19686 -12.08920 -11.87228 -11.52326 -11.36304 -11.26114 -11.02744 -10.80004 -10.69542 -10.58886 -10.39166 -10.35015 -9.63650 -9.27773 -9.00676 -8.73036 -8.56026 -8.47363 -8.31165 -5.96458 -3.98340 3.34477 3.40266 3.44089 3.58531 3.64929 4.21930 4.35117 4.49679 4.60999 4.73710 4.92601 5.00397 5.09421 5.13981 5.23367 5.26084 5.26870 5.33450 5.39284 5.46482 5.52336 5.54278 5.64104 5.66615 5.71420 5.74188 5.77710 5.85462 5.91160 6.10031 6.33752 6.56474 6.65137 6.66229 6.75378 6.87828 6.89591 6.97853 7.20231 7.37613 7.72212 7.87402 8.04251 8.47740 9.08861 9.65429 11.15081 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.033421 B = 0.002983 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.599841 B = 9383.790611 C = 9617.431544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.056 3.944 4 C 0.057 3.943 5 N -0.531 5.531 6 C 0.048 3.952 7 C 0.021 3.979 8 N -0.480 5.480 9 C 0.026 3.974 10 C -0.103 4.103 11 C 0.022 3.978 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.010 3.990 21 C 0.058 3.942 22 C 0.056 3.944 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.026 0.974 26 H 0.078 0.922 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.037 0.963 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.015 0.985 38 H 0.013 0.987 39 H 0.260 0.740 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.042 0.958 44 H 0.043 0.957 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.184 -6.979 -17.761 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.072 4.072 4 C -0.071 4.071 5 N -0.257 5.257 6 C -0.060 4.060 7 C -0.108 4.108 8 N -0.203 5.203 9 C -0.103 4.103 10 C -0.141 4.141 11 C -0.016 4.016 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.119 4.119 21 C -0.070 4.070 22 C -0.072 4.072 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.503 -6.993 -17.834 24.643 hybrid contribution -0.256 -0.030 1.197 1.224 sum -15.759 -7.023 -16.637 23.968 Atomic orbital electron populations 1.22340 0.87220 1.02045 1.00704 1.62175 1.07815 1.14129 1.43056 1.22179 0.94709 0.89219 1.01068 1.22105 0.93990 0.98905 0.92109 1.62430 1.07035 1.13777 1.42440 1.23645 0.85943 0.97977 0.98455 1.23942 0.93345 0.97917 0.95641 1.68563 1.31438 1.08859 1.11439 1.22762 0.99691 0.95883 0.91915 1.21575 0.98437 0.99091 0.94997 1.19072 0.96690 0.94228 0.91561 1.21262 1.34287 0.98262 1.01798 0.92705 1.25031 0.96190 0.94900 0.98421 1.69966 1.46710 1.09692 1.27291 0.86598 0.80362 0.79814 0.81261 1.20659 1.21260 1.19883 1.23971 0.93966 0.95486 0.98513 1.22116 0.94013 0.89652 1.01262 1.22182 0.94712 0.98346 0.91947 0.91404 0.91396 0.95526 0.90381 0.93877 0.94029 0.90057 0.90918 0.90286 0.89827 0.91116 0.94497 0.93593 0.92732 0.96639 0.96832 0.93058 0.89930 0.90701 0.89990 0.94015 0.93830 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.60 60.06 0.58 0.76 16 2 N -0.55 -4.97 4.97 -242.75 -1.21 -6.18 16 3 C 0.06 0.50 5.62 -3.76 -0.02 0.48 16 4 C 0.06 0.55 5.43 -3.76 -0.02 0.53 16 5 N -0.53 -5.82 4.67 -227.89 -1.06 -6.88 16 6 C 0.05 0.57 3.37 -69.41 -0.23 0.34 16 7 C 0.02 0.29 6.73 -2.64 -0.02 0.27 16 8 N -0.48 -7.52 6.26 -238.24 -1.49 -9.01 16 9 C 0.03 0.47 4.82 -3.82 -0.02 0.45 16 10 C -0.10 -2.23 5.22 -26.73 -0.14 -2.37 16 11 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 12 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 13 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 16 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.01 0.13 6.52 -2.76 -0.02 0.11 16 21 C 0.06 0.57 5.58 -3.77 -0.02 0.55 16 22 C 0.06 0.51 5.62 -3.76 -0.02 0.49 16 23 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 25 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.75 7.03 -51.93 -0.37 0.38 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.19 7.79 -51.93 -0.40 0.79 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.04 0.67 7.70 -51.93 -0.40 0.27 16 35 H 0.05 0.98 7.55 -51.93 -0.39 0.59 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.97 7.60 -51.93 -0.39 0.57 16 42 H 0.08 0.79 8.00 -51.93 -0.42 0.37 16 43 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.61 8.13 -51.93 -0.42 0.19 16 LS Contribution 350.08 15.07 5.28 5.28 Total: -1.00 -30.95 350.08 -11.93 -42.88 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -8.68 Total: -4.56 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.48 Total: -11.81 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -3.03 Total: -48.84 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.95 -11.93 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697763048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.860 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds