Wall clock time and date at job start Mon Mar 30 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46956 * 111.00293 * 2 1 4 4 C 1.53056 * 109.38342 * 183.17592 * 3 2 1 5 5 N 1.46963 * 109.35944 * 301.62902 * 4 3 2 6 6 C 1.46903 * 110.99595 * 183.16796 * 5 4 3 7 7 C 1.53930 * 113.73165 * 154.94575 * 6 5 4 8 8 N 1.48186 * 86.10135 * 221.95560 * 7 6 5 9 9 C 1.46902 * 111.07242 * 137.52155 * 8 7 6 10 10 C 1.52999 * 109.46891 * 70.56928 * 9 8 7 11 11 C 1.53000 * 109.46676 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.46976 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99728 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99756 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00123 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99528 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46802 * 89.99871 * 16 14 12 18 18 H 1.48498 * 109.46955 * 209.99762 * 16 14 12 19 19 H 1.48499 * 109.47181 * 330.00239 * 16 14 12 20 20 C 1.47962 * 90.79916 * 24.59939 * 8 7 6 21 21 C 1.46956 * 110.89784 * 59.28921 * 5 4 3 22 22 C 1.46962 * 110.99604 * 123.79812 * 2 1 3 23 23 H 1.09006 * 109.46670 * 60.00118 * 1 2 3 24 24 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47127 * 300.00706 * 1 2 3 26 26 H 1.09002 * 109.48806 * 303.15319 * 3 2 1 27 27 H 1.09002 * 109.49141 * 63.19591 * 3 2 1 28 28 H 1.08992 * 109.49038 * 61.57437 * 4 3 2 29 29 H 1.08994 * 109.48641 * 181.64718 * 4 3 2 30 30 H 1.09006 * 112.93775 * 286.51165 * 6 5 4 31 31 H 1.08998 * 113.76189 * 336.23756 * 7 6 5 32 32 H 1.09006 * 113.75970 * 107.60268 * 7 6 5 33 33 H 1.09002 * 109.47358 * 190.56791 * 9 8 7 34 34 H 1.08998 * 109.46688 * 310.56905 * 9 8 7 35 35 H 1.09001 * 109.46974 * 299.99526 * 10 9 8 36 36 H 1.08998 * 109.47474 * 60.00458 * 10 9 8 37 37 H 1.09002 * 109.47190 * 299.99628 * 11 10 9 38 38 H 1.08998 * 109.47967 * 60.00047 * 11 10 9 39 39 H 0.96999 * 119.99625 * 180.02562 * 15 14 12 40 40 H 1.08997 * 113.76261 * 221.08382 * 20 8 7 41 41 H 1.09007 * 113.85793 * 89.73139 * 20 8 7 42 42 H 1.09002 * 109.48806 * 180.71933 * 21 5 4 43 43 H 1.09003 * 109.49203 * 60.65575 * 21 5 4 44 44 H 1.09001 * 109.48625 * 296.77747 * 22 2 1 45 45 H 1.09003 * 109.48941 * 56.82355 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3295 -0.0800 5 7 4.0501 0.5658 1.0599 6 6 5.5191 0.5658 1.0600 7 6 6.1385 0.3510 2.4527 8 7 7.1045 1.4093 2.0749 9 6 7.3349 2.3368 3.1906 10 6 8.1341 1.6282 4.2861 11 6 8.3735 2.5941 5.4483 12 6 9.1612 1.8964 6.5271 13 1 9.4607 0.8669 6.3970 14 6 9.4995 2.5723 7.6803 15 7 9.1353 3.8260 7.8384 16 14 10.4753 1.7072 9.0178 17 1 11.9274 1.9002 8.7745 18 1 10.1150 2.2774 10.3408 19 1 10.1592 0.2563 9.0013 20 6 6.1387 1.9741 1.1067 21 6 3.5234 -0.8061 1.0599 22 6 1.9956 -0.7632 1.1402 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.6014 1.9128 -0.8603 27 1 1.6935 1.8775 0.9171 28 1 3.8258 0.8485 -1.0102 29 1 3.9176 2.3453 -0.0506 30 1 5.9439 -0.0751 0.2873 31 1 5.4794 0.6311 3.2745 32 1 6.5914 -0.6316 2.5852 33 1 7.8946 3.2018 2.8344 34 1 6.3770 2.6649 3.5940 35 1 7.5744 0.7634 4.6423 36 1 9.0920 1.3002 3.8826 37 1 8.9330 3.4592 5.0924 38 1 7.4155 2.9218 5.8518 39 1 9.3737 4.3016 8.6495 40 1 6.5917 2.2860 0.1656 41 1 5.4789 2.7303 1.5321 42 1 3.9176 -1.3470 1.9202 43 1 3.8253 -1.3116 0.1426 44 1 1.6936 -0.2820 2.0704 45 1 1.6009 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697763048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:16 Heat of formation + Delta-G solvation = 14.825975 kcal Electronic energy + Delta-G solvation = -20556.149336 eV Core-core repulsion = 17608.214405 eV Total energy + Delta-G solvation = -2947.934932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.32975 -39.55320 -36.43684 -35.49685 -33.71969 -31.96431 -30.45435 -28.67231 -27.30699 -26.49118 -24.67711 -24.33513 -23.40683 -21.74278 -20.82619 -20.56380 -18.53981 -17.66834 -16.91438 -16.55780 -16.24660 -16.07706 -15.94834 -15.80434 -15.66389 -14.92070 -14.73725 -14.46989 -14.00645 -13.74915 -13.50234 -13.42394 -13.22357 -13.02119 -12.79968 -12.72590 -12.52166 -12.27579 -12.19868 -12.04510 -11.98050 -11.64436 -11.58560 -11.40794 -11.30360 -11.00527 -10.56777 -9.81559 -9.45579 -9.27908 -8.21341 -6.32697 1.39052 1.40922 1.52117 2.40099 2.70337 2.97400 3.11403 3.12181 3.35170 3.87905 3.99825 4.06332 4.10068 4.19461 4.21254 4.28845 4.37882 4.41352 4.54279 4.56836 4.61793 4.65699 4.68122 4.69618 4.77964 4.82792 4.86936 4.90128 4.95755 4.99181 5.00799 5.08682 5.12190 5.21428 5.42314 5.50650 5.72193 5.83637 5.93976 5.95515 6.04440 6.12366 6.16422 6.25300 6.83750 7.36554 8.90750 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.033421 B = 0.002983 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.599841 B = 9383.790611 C = 9617.431544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.555 5.555 3 C 0.059 3.941 4 C 0.058 3.942 5 N -0.542 5.542 6 C 0.067 3.933 7 C 0.017 3.983 8 N -0.492 5.492 9 C 0.039 3.961 10 C -0.087 4.087 11 C 0.027 3.973 12 C -0.544 4.544 13 H 0.058 0.942 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.263 1.263 20 C 0.014 3.986 21 C 0.059 3.941 22 C 0.059 3.941 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.023 0.977 26 H 0.093 0.907 27 H 0.031 0.969 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.032 0.968 35 H 0.047 0.953 36 H 0.050 0.950 37 H -0.009 1.009 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.031 0.969 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.525 -8.192 -18.580 26.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.280 5.280 3 C -0.070 4.070 4 C -0.069 4.069 5 N -0.268 5.268 6 C -0.042 4.042 7 C -0.112 4.112 8 N -0.214 5.214 9 C -0.090 4.090 10 C -0.125 4.125 11 C -0.011 4.011 12 C -0.582 4.582 13 H 0.077 0.923 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.114 4.114 21 C -0.069 4.069 22 C -0.069 4.069 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.042 0.958 26 H 0.112 0.888 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.010 0.990 38 H 0.008 0.992 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.858 -8.215 -18.673 25.839 hybrid contribution -0.199 0.364 1.419 1.479 sum -16.057 -7.851 -17.254 24.842 Atomic orbital electron populations 1.22389 0.86055 1.02783 1.01028 1.62220 1.08955 1.14039 1.42817 1.22179 0.94262 0.89375 1.01155 1.22134 0.94465 0.98841 0.91502 1.62404 1.06360 1.14661 1.43390 1.23406 0.86661 0.97162 0.96946 1.23953 0.93059 0.97468 0.96720 1.68538 1.33154 1.08946 1.10789 1.22485 0.98735 0.95883 0.91864 1.21310 0.98851 0.98034 0.94315 1.18964 0.94751 0.94384 0.92992 1.21687 1.34913 0.98697 1.02895 0.92347 1.26009 0.97182 0.95628 1.01093 1.70097 1.47770 1.11316 1.28246 0.85424 0.78800 0.78924 0.77777 1.19660 1.20557 1.18745 1.24015 0.93244 0.96026 0.98155 1.22133 0.94556 0.89004 1.01240 1.22165 0.94190 0.99064 0.91496 0.90409 0.90501 0.95840 0.88841 0.95080 0.93930 0.89683 0.90168 0.91600 0.89455 0.91444 0.94949 0.93460 0.93136 0.99023 0.99194 0.92708 0.88263 0.90878 0.90067 0.93916 0.95086 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.60 127.69 1.23 1.54 16 2 N -0.56 -9.15 4.97 -921.91 -4.58 -13.73 16 3 C 0.06 0.96 5.62 86.31 0.49 1.44 16 4 C 0.06 1.03 5.43 86.31 0.47 1.50 16 5 N -0.54 -11.17 4.67 -874.92 -4.09 -15.26 16 6 C 0.07 1.48 3.37 46.48 0.16 1.64 16 7 C 0.02 0.47 6.73 86.36 0.58 1.05 16 8 N -0.49 -14.98 6.26 -907.66 -5.68 -20.66 16 9 C 0.04 1.43 4.82 86.30 0.42 1.84 16 10 C -0.09 -3.82 5.22 30.59 0.16 -3.66 16 11 C 0.03 1.47 4.97 29.85 0.15 1.62 16 12 C -0.54 -32.10 9.11 25.60 0.23 -31.86 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 14 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 15 N -0.93 -58.12 13.29 21.45 0.28 -57.83 16 16 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 20 C 0.01 0.34 6.52 86.41 0.56 0.91 16 21 C 0.06 1.08 5.58 86.31 0.48 1.56 16 22 C 0.06 0.99 5.62 86.31 0.49 1.48 16 23 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.08 0.82 8.13 -2.39 -0.02 0.80 16 25 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 26 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 1.42 7.03 -2.39 -0.02 1.40 16 30 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.07 1.99 7.79 -2.39 -0.02 1.97 16 32 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.03 1.20 7.70 -2.39 -0.02 1.18 16 35 H 0.05 2.03 7.55 -2.39 -0.02 2.02 16 36 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 37 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.07 1.81 7.60 -2.38 -0.02 1.79 16 42 H 0.08 1.48 8.00 -2.39 -0.02 1.46 16 43 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.09 1.28 8.13 -2.39 -0.02 1.26 16 Total: -1.00 -65.94 350.08 -5.26 -71.20 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.91 Total: 9.64 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 5.87 Total: -20.58 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -14.06 Total: -107.49 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -65.94 -5.26 -71.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697763048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.027 kcal (2) G-P(sol) polarization free energy of solvation -65.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds