Wall clock time and date at job start Mon Mar 30 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 14 14 C 1.47481 * 111.00214 * 199.02947 * 13 2 1 15 15 C 1.53506 * 87.93179 * 138.70878 * 14 13 2 16 16 N 1.46899 * 114.16900 * 220.33312 * 15 14 13 17 17 C 1.46953 * 111.00314 * 32.63908 * 16 15 14 18 18 C 1.53054 * 109.36499 * 176.81476 * 17 16 15 19 19 N 1.46956 * 109.36627 * 58.40094 * 18 17 16 20 20 C 1.46899 * 110.99787 * 176.81098 * 19 18 17 21 21 C 1.46955 * 110.87680 * 300.67771 * 19 18 17 22 22 C 1.46964 * 110.99767 * 268.83749 * 16 15 14 23 23 C 1.47475 * 111.00264 * 295.00555 * 13 2 1 24 24 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 25 25 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 26 26 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 28 28 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 29 29 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 30 30 H 1.08997 * 113.47930 * 253.47460 * 14 13 2 31 31 H 1.09002 * 113.47460 * 23.94207 * 14 13 2 32 32 H 1.08998 * 114.17201 * 87.62198 * 15 14 13 33 33 H 1.09004 * 109.48699 * 296.78062 * 17 16 15 34 34 H 1.08998 * 109.48809 * 56.84426 * 17 16 15 35 35 H 1.09001 * 109.48635 * 298.42993 * 18 17 16 36 36 H 1.08999 * 109.50362 * 178.38005 * 18 17 16 37 37 H 1.09003 * 109.46994 * 183.79581 * 20 19 18 38 38 H 1.09002 * 109.47399 * 303.80216 * 20 19 18 39 39 H 1.09000 * 109.47160 * 63.80388 * 20 19 18 40 40 H 1.08994 * 109.49127 * 299.35203 * 21 19 18 41 41 H 1.09007 * 109.50242 * 179.29832 * 21 19 18 42 42 H 1.09002 * 109.48971 * 303.15695 * 22 16 15 43 43 H 1.08994 * 109.48424 * 63.22465 * 22 16 15 44 44 H 1.08999 * 113.47698 * 336.06043 * 23 13 2 45 45 H 1.08998 * 113.47752 * 106.52977 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2994 9 14 6.0922 -1.0621 -2.4360 10 1 6.7001 -2.2147 -1.7239 11 1 6.5298 -1.0702 -3.8551 12 1 6.5267 0.2031 -1.7914 13 7 2.0196 -0.6924 1.1995 14 6 3.4230 -0.3358 1.4798 15 6 3.0496 -0.2643 2.9670 16 7 3.6714 0.8529 3.6902 17 6 3.8429 2.0185 2.8119 18 6 4.4186 3.1833 3.6210 19 7 5.7022 2.7790 4.2114 20 6 6.3241 3.8962 4.9346 21 6 5.5307 1.6134 5.0897 22 6 4.9551 0.4486 4.2807 23 6 1.6471 0.0421 2.4229 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 -0.2617 -2.1370 28 1 1.7517 -1.7715 -1.2055 29 1 4.0609 -2.2444 -4.0348 30 1 4.1285 -1.1334 1.2471 31 1 3.7189 0.6254 1.0597 32 1 3.1262 -1.2161 3.4927 33 1 4.5265 1.7657 2.0014 34 1 2.8770 2.3064 2.3969 35 1 3.7223 3.4539 4.4147 36 1 4.5737 4.0402 2.9654 37 1 7.3028 3.5900 5.3040 38 1 6.4393 4.7457 4.2613 39 1 5.6916 4.1819 5.7751 40 1 4.8471 1.8662 5.9002 41 1 6.4965 1.3254 5.5050 42 1 4.7999 -0.4081 4.9365 43 1 5.6512 0.1780 3.4869 44 1 1.4692 1.1042 2.2545 45 1 0.8477 -0.4352 2.9895 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697775945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:04 Heat of formation + Delta-G solvation = 57.459714 kcal Electronic energy + Delta-G solvation = -21838.803029 eV Core-core repulsion = 18892.716835 eV Total energy + Delta-G solvation = -2946.086194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.51443 -38.43984 -35.15473 -33.27980 -31.81657 -30.96813 -28.39272 -27.78118 -25.54178 -24.84023 -23.89532 -23.48470 -22.74127 -20.23166 -19.46928 -18.63678 -16.57321 -16.11268 -15.54632 -15.20522 -15.01815 -14.85461 -14.73025 -14.32817 -14.24875 -13.31241 -13.08135 -12.86374 -12.58746 -12.35930 -12.23057 -11.90552 -11.78957 -11.51954 -11.40536 -11.15431 -11.12682 -10.99095 -10.83841 -10.72478 -10.61155 -10.43335 -10.17539 -9.88443 -9.07175 -8.92582 -8.48783 -8.33217 -8.09765 -7.96796 -5.95261 -3.95541 3.32913 3.39639 3.41839 3.80475 3.89364 4.48675 4.72815 4.84933 4.91264 4.96592 5.06178 5.21025 5.24567 5.39241 5.42143 5.43155 5.46298 5.52583 5.64096 5.67502 5.71132 5.82730 5.87509 5.91528 5.93144 6.00375 6.07872 6.14779 6.21024 6.36717 6.45658 6.59654 6.72040 6.86707 6.88710 6.90606 7.15247 7.21060 7.28065 7.58513 7.71232 8.03597 8.09010 8.45945 9.08359 9.66810 11.16498 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.006040 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.147272 B = 4634.959749 C = 5695.339174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 H 0.032 0.968 4 C 0.032 3.968 5 C -0.517 4.517 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.884 3.116 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.449 5.449 14 C -0.006 4.006 15 C 0.045 3.955 16 N -0.527 5.527 17 C 0.048 3.952 18 C 0.059 3.941 19 N -0.546 5.546 20 C 0.027 3.973 21 C 0.059 3.941 22 C 0.056 3.944 23 C 0.003 3.997 24 H 0.038 0.962 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.018 0.982 28 H 0.025 0.975 29 H 0.259 0.741 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.024 0.976 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.046 0.954 44 H 0.062 0.938 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.203 8.703 16.540 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.055 4.055 3 H 0.050 0.950 4 C -0.005 4.005 5 C -0.555 4.555 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.172 5.172 14 C -0.136 4.136 15 C -0.064 4.064 16 N -0.251 5.251 17 C -0.080 4.080 18 C -0.069 4.069 19 N -0.271 5.271 20 C -0.122 4.122 21 C -0.069 4.069 22 C -0.072 4.072 23 C -0.127 4.127 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.036 0.964 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.006 7.919 16.239 18.095 hybrid contribution 1.240 0.894 -0.250 1.549 sum 2.246 8.813 15.990 18.395 Atomic orbital electron populations 1.21820 0.96269 1.01683 1.00071 1.22323 0.93566 0.95788 0.93810 0.95025 1.19089 0.95690 0.96018 0.89678 1.21434 0.92234 1.33945 1.07900 0.92044 1.24973 0.97888 0.95560 0.95847 1.69964 1.35257 1.36180 1.12120 0.86721 0.86486 0.78408 0.77178 1.20727 1.21312 1.19968 1.68869 1.04573 1.43224 1.00567 1.24418 0.94126 1.01691 0.93378 1.23574 0.95784 0.93818 0.93251 1.62184 1.23047 1.05936 1.33901 1.22304 1.00594 0.90308 0.94784 1.22174 0.89198 0.97470 0.98023 1.62130 1.24269 1.06354 1.34328 1.22330 0.99059 0.93822 0.96960 1.22166 0.99892 0.90805 0.94077 1.22120 0.90143 0.96746 0.98225 1.23900 0.96756 0.97934 0.94116 0.94259 0.92809 0.92397 0.96409 0.95670 0.93161 0.89822 0.90497 0.87288 0.92703 0.90223 0.94232 0.90413 0.91465 0.91426 0.95790 0.94195 0.90526 0.90290 0.93548 0.92036 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.18 37.15 0.34 -2.18 16 2 C 0.05 1.13 1.94 -67.71 -0.13 1.00 16 3 H 0.03 0.67 7.56 -51.92 -0.39 0.28 16 4 C 0.03 0.85 4.65 -27.88 -0.13 0.72 16 5 C -0.52 -14.30 8.07 -34.44 -0.28 -14.58 16 6 H 0.06 1.63 4.56 -52.49 -0.24 1.39 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 9 Si 0.88 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 13 N -0.45 -8.78 6.13 -236.61 -1.45 -10.22 16 14 C -0.01 -0.11 4.45 -7.55 -0.03 -0.14 16 15 C 0.04 0.68 4.24 -67.50 -0.29 0.39 16 16 N -0.53 -7.20 4.85 -226.16 -1.10 -8.30 16 17 C 0.05 0.67 4.40 -3.77 -0.02 0.65 16 18 C 0.06 0.71 5.62 -3.77 -0.02 0.69 16 19 N -0.55 -6.45 4.97 -242.75 -1.21 -7.65 16 20 C 0.03 0.24 9.60 60.06 0.58 0.82 16 21 C 0.06 0.65 5.62 -3.77 -0.02 0.63 16 22 C 0.06 0.69 5.60 -3.76 -0.02 0.67 16 23 C 0.00 0.04 6.12 -7.54 -0.05 0.00 16 24 H 0.04 0.61 7.34 -51.93 -0.38 0.23 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.08 1.76 7.78 -51.93 -0.40 1.35 16 31 H 0.08 1.52 3.97 -51.93 -0.21 1.31 16 32 H 0.11 1.59 8.07 -51.93 -0.42 1.18 16 33 H 0.05 0.88 6.34 -51.93 -0.33 0.55 16 34 H 0.08 1.11 6.33 -51.93 -0.33 0.78 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.86 8.13 -51.93 -0.42 0.43 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 39 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 42 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.95 6.09 -51.93 -0.32 0.64 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 335.33 15.07 5.05 5.05 Total: -1.00 -30.10 335.33 -11.22 -41.31 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -8.07 Total: -0.85 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -0.16 Total: -9.78 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -3.02 Total: -52.57 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.10 -11.22 -41.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697775945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.772 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds