Wall clock time and date at job start Mon Mar 30 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 14 14 C 1.47481 * 111.00214 * 199.02947 * 13 2 1 15 15 C 1.53506 * 87.93179 * 138.70878 * 14 13 2 16 16 N 1.46899 * 114.16900 * 220.33312 * 15 14 13 17 17 C 1.46953 * 111.00314 * 32.63908 * 16 15 14 18 18 C 1.53054 * 109.36499 * 176.81476 * 17 16 15 19 19 N 1.46956 * 109.36627 * 58.40094 * 18 17 16 20 20 C 1.46899 * 110.99787 * 176.81098 * 19 18 17 21 21 C 1.46955 * 110.87680 * 300.67771 * 19 18 17 22 22 C 1.46964 * 110.99767 * 268.83749 * 16 15 14 23 23 C 1.47475 * 111.00264 * 295.00555 * 13 2 1 24 24 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 25 25 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 26 26 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 28 28 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 29 29 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 30 30 H 1.08997 * 113.47930 * 253.47460 * 14 13 2 31 31 H 1.09002 * 113.47460 * 23.94207 * 14 13 2 32 32 H 1.08998 * 114.17201 * 87.62198 * 15 14 13 33 33 H 1.09004 * 109.48699 * 296.78062 * 17 16 15 34 34 H 1.08998 * 109.48809 * 56.84426 * 17 16 15 35 35 H 1.09001 * 109.48635 * 298.42993 * 18 17 16 36 36 H 1.08999 * 109.50362 * 178.38005 * 18 17 16 37 37 H 1.09003 * 109.46994 * 183.79581 * 20 19 18 38 38 H 1.09002 * 109.47399 * 303.80216 * 20 19 18 39 39 H 1.09000 * 109.47160 * 63.80388 * 20 19 18 40 40 H 1.08994 * 109.49127 * 299.35203 * 21 19 18 41 41 H 1.09007 * 109.50242 * 179.29832 * 21 19 18 42 42 H 1.09002 * 109.48971 * 303.15695 * 22 16 15 43 43 H 1.08994 * 109.48424 * 63.22465 * 22 16 15 44 44 H 1.08999 * 113.47698 * 336.06043 * 23 13 2 45 45 H 1.08998 * 113.47752 * 106.52977 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2994 9 14 6.0922 -1.0621 -2.4360 10 1 6.7001 -2.2147 -1.7239 11 1 6.5298 -1.0702 -3.8551 12 1 6.5267 0.2031 -1.7914 13 7 2.0196 -0.6924 1.1995 14 6 3.4230 -0.3358 1.4798 15 6 3.0496 -0.2643 2.9670 16 7 3.6714 0.8529 3.6902 17 6 3.8429 2.0185 2.8119 18 6 4.4186 3.1833 3.6210 19 7 5.7022 2.7790 4.2114 20 6 6.3241 3.8962 4.9346 21 6 5.5307 1.6134 5.0897 22 6 4.9551 0.4486 4.2807 23 6 1.6471 0.0421 2.4229 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 -0.2617 -2.1370 28 1 1.7517 -1.7715 -1.2055 29 1 4.0609 -2.2444 -4.0348 30 1 4.1285 -1.1334 1.2471 31 1 3.7189 0.6254 1.0597 32 1 3.1262 -1.2161 3.4927 33 1 4.5265 1.7657 2.0014 34 1 2.8770 2.3064 2.3969 35 1 3.7223 3.4539 4.4147 36 1 4.5737 4.0402 2.9654 37 1 7.3028 3.5900 5.3040 38 1 6.4393 4.7457 4.2613 39 1 5.6916 4.1819 5.7751 40 1 4.8471 1.8662 5.9002 41 1 6.4965 1.3254 5.5050 42 1 4.7999 -0.4081 4.9365 43 1 5.6512 0.1780 3.4869 44 1 1.4692 1.1042 2.2545 45 1 0.8477 -0.4352 2.9895 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697775945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:03 Heat of formation + Delta-G solvation = 33.872681 kcal Electronic energy + Delta-G solvation = -21839.825839 eV Core-core repulsion = 18892.716835 eV Total energy + Delta-G solvation = -2947.109004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.84570 -39.52334 -36.49203 -35.03896 -33.58737 -31.94326 -29.74038 -29.38390 -26.85956 -26.27802 -25.16275 -24.75723 -24.19962 -21.35135 -21.09508 -19.90710 -18.39860 -17.52572 -17.05671 -16.57256 -16.22855 -15.98305 -15.82561 -15.71229 -15.46885 -14.74004 -14.61500 -14.25125 -13.87728 -13.58598 -13.44843 -13.27323 -13.11443 -13.11021 -12.88682 -12.69287 -12.60651 -12.35770 -12.21881 -12.16670 -12.14392 -11.81205 -11.72685 -11.28924 -10.97044 -10.86250 -10.56079 -9.63753 -9.36293 -9.17873 -8.17564 -6.24280 1.35019 1.35479 1.45505 2.38878 2.71939 2.98765 3.15637 3.37128 3.63608 3.81101 3.93755 4.07426 4.21398 4.23302 4.28032 4.30712 4.34773 4.44061 4.51742 4.61357 4.64267 4.64891 4.67969 4.78533 4.84440 4.90910 4.91389 4.99359 5.00623 5.01675 5.08254 5.09678 5.16548 5.27604 5.49608 5.55105 5.64351 5.86797 5.92543 5.98880 6.13693 6.17524 6.26068 6.39965 6.89067 7.42352 8.95141 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.006040 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.147272 B = 4634.959749 C = 5695.339174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.063 3.937 3 H 0.029 0.971 4 C 0.038 3.962 5 C -0.524 4.524 6 H 0.070 0.930 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.950 3.050 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.265 1.265 13 N -0.471 5.471 14 C -0.009 4.009 15 C 0.066 3.934 16 N -0.519 5.519 17 C 0.050 3.950 18 C 0.065 3.935 19 N -0.566 5.566 20 C 0.028 3.972 21 C 0.063 3.937 22 C 0.053 3.947 23 C 0.013 3.987 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.050 0.950 27 H -0.008 1.008 28 H -0.010 1.010 29 H 0.260 0.740 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.027 0.973 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.032 0.968 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.026 0.974 44 H 0.069 0.931 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.728 9.955 19.031 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.046 4.046 3 H 0.047 0.953 4 C 0.001 3.999 5 C -0.562 4.562 6 H 0.088 0.912 7 C -0.196 4.196 8 N -0.577 5.577 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.189 1.189 13 N -0.194 5.194 14 C -0.140 4.140 15 C -0.044 4.044 16 N -0.242 5.242 17 C -0.078 4.078 18 C -0.063 4.063 19 N -0.292 5.292 20 C -0.120 4.120 21 C -0.065 4.065 22 C -0.075 4.075 23 C -0.116 4.116 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.010 0.990 28 H 0.008 0.992 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.045 0.955 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.535 9.187 18.756 20.942 hybrid contribution 1.076 0.499 -1.013 1.560 sum 2.610 9.687 17.743 20.383 Atomic orbital electron populations 1.21740 0.93724 1.01800 1.01772 1.22086 0.95590 0.94657 0.92300 0.95321 1.18947 0.95205 0.94248 0.91521 1.21843 0.93291 1.33254 1.07796 0.91173 1.25848 1.02799 0.95377 0.95621 1.70104 1.37200 1.37455 1.12923 0.85662 0.80666 0.78770 0.77306 1.20186 1.20867 1.18918 1.68802 1.05114 1.44176 1.01327 1.24329 0.93252 0.99815 0.96570 1.23424 0.95076 0.94909 0.90991 1.62253 1.23792 1.05194 1.32962 1.22269 0.99943 0.91136 0.94447 1.22099 0.89527 0.96594 0.98050 1.62137 1.24182 1.07504 1.35358 1.22362 0.99410 0.93112 0.97082 1.22155 1.00739 0.89927 0.93641 1.22234 0.89001 0.98263 0.97986 1.23884 0.97602 0.98108 0.92023 0.91180 0.92469 0.93054 0.99014 0.99151 0.93127 0.92904 0.91681 0.86255 0.95463 0.90425 0.93573 0.89745 0.90531 0.91030 0.94955 0.93625 0.88962 0.88605 0.95606 0.91274 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 9.18 71.98 0.66 -3.95 16 2 C 0.06 2.64 1.94 44.91 0.09 2.73 16 3 H 0.03 1.22 7.56 -2.38 -0.02 1.20 16 4 C 0.04 2.06 4.65 29.85 0.14 2.20 16 5 C -0.52 -29.82 8.07 25.60 0.21 -29.62 16 6 H 0.07 3.81 4.56 -2.91 -0.01 3.79 16 7 C 0.00 0.03 5.46 84.66 0.46 0.49 16 8 N -0.94 -58.43 13.29 21.45 0.28 -58.14 16 9 Si 0.95 45.65 29.54 68.60 2.03 47.67 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 13 N -0.47 -18.26 6.13 -902.49 -5.53 -23.79 16 14 C -0.01 -0.34 4.45 83.57 0.37 0.04 16 15 C 0.07 1.89 4.24 45.37 0.19 2.08 16 16 N -0.52 -13.20 4.85 -869.43 -4.22 -17.42 16 17 C 0.05 1.33 4.40 86.31 0.38 1.71 16 18 C 0.07 1.43 5.62 86.31 0.49 1.91 16 19 N -0.57 -12.11 4.97 -921.93 -4.58 -16.69 16 20 C 0.03 0.44 9.60 127.69 1.23 1.67 16 21 C 0.06 1.23 5.62 86.31 0.49 1.71 16 22 C 0.05 1.22 5.60 86.31 0.48 1.70 16 23 C 0.01 0.38 6.12 83.58 0.51 0.89 16 24 H 0.07 2.00 7.34 -2.39 -0.02 1.98 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 27 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 28 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 29 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.05 2.28 7.78 -2.39 -0.02 2.27 16 31 H 0.07 2.62 3.97 -2.39 -0.01 2.61 16 32 H 0.12 3.24 8.07 -2.39 -0.02 3.22 16 33 H 0.03 0.88 6.34 -2.39 -0.02 0.86 16 34 H 0.08 2.06 6.33 -2.39 -0.02 2.04 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.71 8.13 -2.39 -0.02 1.69 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 39 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.10 1.86 8.11 -2.39 -0.02 1.84 16 43 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.07 1.97 6.09 -2.39 -0.01 1.95 16 45 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -66.23 335.33 -5.39 -71.62 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.94 Total: 13.19 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 5.69 Total: -16.44 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -14.04 Total: -116.05 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -66.23 -5.39 -71.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697775945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.490 kcal (2) G-P(sol) polarization free energy of solvation -66.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds