Wall clock time and date at job start Mon Mar 30 2020 05:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47172 * 2 1 4 4 C 1.53000 * 109.47019 * 240.00140 * 2 1 3 5 5 C 1.50706 * 109.47405 * 175.94886 * 4 2 1 6 6 H 1.08000 * 119.99306 * 4.95823 * 5 4 2 7 7 C 1.37873 * 120.00370 * 184.94866 * 5 4 2 8 8 N 1.31518 * 119.99779 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46870 * 90.00442 * 9 7 5 11 11 H 1.48504 * 109.47098 * 210.00237 * 9 7 5 12 12 H 1.48493 * 109.47387 * 330.00500 * 9 7 5 13 13 N 1.46903 * 109.47488 * 120.00372 * 2 1 3 14 14 C 1.47901 * 110.99893 * 63.04459 * 13 2 1 15 15 C 1.53988 * 107.05503 * 214.15717 * 14 13 2 16 16 C 1.54595 * 105.14308 * 1.22798 * 15 14 13 17 17 H 1.08998 * 110.72654 * 263.59189 * 16 15 14 18 18 N 1.46911 * 110.72467 * 140.49080 * 16 15 14 19 19 C 1.46957 * 110.99594 * 55.21008 * 18 16 15 20 20 C 1.53052 * 109.36109 * 183.18861 * 19 18 16 21 21 N 1.46957 * 109.36419 * 301.59624 * 20 19 18 22 22 C 1.46959 * 110.87642 * 59.32473 * 21 20 19 23 23 C 1.46949 * 110.99899 * 179.00847 * 18 16 15 24 24 C 1.48535 * 110.99486 * 305.65302 * 13 2 1 25 25 H 1.09003 * 109.46610 * 186.74546 * 1 2 3 26 26 H 1.09001 * 109.46709 * 306.73833 * 1 2 3 27 27 H 1.08994 * 109.47100 * 66.74603 * 1 2 3 28 28 H 1.09000 * 109.46958 * 295.95102 * 4 2 1 29 29 H 1.08999 * 109.47630 * 55.94975 * 4 2 1 30 30 H 0.97003 * 119.99743 * 179.97438 * 8 7 5 31 31 H 1.08992 * 109.92105 * 333.51325 * 14 13 2 32 32 H 1.08997 * 109.91290 * 94.81226 * 14 13 2 33 33 H 1.09005 * 110.31096 * 120.14762 * 15 14 13 34 34 H 1.09008 * 110.31358 * 242.31081 * 15 14 13 35 35 H 1.09005 * 109.48611 * 303.14790 * 19 18 16 36 36 H 1.09001 * 109.49336 * 63.22098 * 19 18 16 37 37 H 1.08997 * 109.48796 * 181.62602 * 20 19 18 38 38 H 1.09006 * 109.50743 * 61.57516 * 20 19 18 39 39 H 1.00898 * 111.00040 * 295.45457 * 21 20 19 40 40 H 1.09003 * 109.48112 * 180.71220 * 22 21 20 41 41 H 1.08992 * 109.51314 * 60.65713 * 22 21 20 42 42 H 1.09002 * 109.48909 * 296.77791 * 23 18 16 43 43 H 1.08997 * 109.49415 * 56.84394 * 23 18 16 44 44 H 1.09007 * 110.66373 * 278.15531 * 24 13 2 45 45 H 1.08993 * 110.67066 * 41.28510 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5437 -0.6349 -1.3006 6 1 4.0871 -0.1881 -0.4811 7 6 4.2256 -1.1265 -2.3934 8 7 3.5637 -1.6703 -3.3913 9 14 6.0894 -1.0189 -2.4572 10 1 6.6768 -2.2416 -1.8529 11 1 6.5305 -0.9042 -3.8705 12 1 6.5426 0.1747 -1.6988 13 7 2.0198 -0.6926 1.1994 14 6 1.6064 -2.1126 1.1974 15 6 1.3513 -2.5108 2.6628 16 6 1.6141 -1.2264 3.4820 17 1 2.6286 -1.2239 3.8805 18 7 0.6317 -1.0907 4.5658 19 6 0.6186 -2.2882 5.4175 20 6 -0.4701 -2.1410 6.4832 21 7 -0.2115 -0.9339 7.2805 22 6 -0.1984 0.2635 6.4286 23 6 0.8903 0.1163 5.3630 24 6 1.4352 -0.1024 2.4307 25 1 -0.3633 -1.0206 0.1207 26 1 -0.3633 0.6147 0.8236 27 1 -0.3633 0.4057 -0.9441 28 1 1.7371 -1.7677 -1.2137 29 1 1.6186 -0.2511 -2.1378 30 1 4.0435 -2.0159 -4.1604 31 1 0.6926 -2.2326 0.6155 32 1 2.4007 -2.7299 0.7778 33 1 0.3193 -2.8374 2.7920 34 1 2.0394 -3.3002 2.9658 35 1 0.4126 -3.1670 4.8063 36 1 1.5886 -2.4007 5.9018 37 1 -0.4624 -3.0153 7.1340 38 1 -1.4434 -2.0560 5.9999 39 1 0.6510 -1.0197 7.7970 40 1 0.0074 1.1423 7.0399 41 1 -1.1683 0.3764 5.9444 42 1 1.8634 0.0311 5.8466 43 1 0.8826 0.9906 4.7121 44 1 1.9837 0.7919 2.7265 45 1 0.3789 0.1235 2.2851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710008545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:16 Heat of formation + Delta-G solvation = 16.428435 kcal Electronic energy + Delta-G solvation = -21573.956520 eV Core-core repulsion = 18626.091076 eV Total energy + Delta-G solvation = -2947.865444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.89670 -38.29681 -34.98402 -32.93812 -31.73667 -31.21194 -28.76690 -27.74501 -27.20147 -24.79620 -23.72705 -23.07030 -21.44678 -20.89055 -19.98415 -18.44190 -16.92478 -16.18650 -15.61993 -15.36574 -15.00396 -14.72595 -14.58615 -14.45346 -14.24612 -13.61134 -13.24839 -13.12174 -12.54664 -12.40333 -11.94450 -11.78072 -11.59004 -11.51018 -11.46108 -11.44095 -11.15813 -10.95372 -10.76754 -10.71209 -10.55121 -10.39904 -10.29133 -9.86686 -9.12172 -9.02052 -8.76193 -8.37794 -8.26299 -7.53227 -5.89225 -3.87471 3.38743 3.44633 3.49284 3.62126 4.05078 4.55700 4.63982 4.76225 4.85439 4.93424 5.00784 5.07035 5.08200 5.19725 5.33811 5.35758 5.47612 5.51312 5.59316 5.61598 5.77388 5.81395 5.82102 5.94532 5.97238 6.02852 6.04888 6.07148 6.21083 6.35771 6.52863 6.66010 6.71095 6.74158 6.94527 6.96434 7.01666 7.10118 7.52574 7.66526 7.81738 8.00027 8.12651 8.58316 9.20001 9.74776 11.22710 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.032708 B = 0.004122 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.844294 B = 6790.541001 C = 6982.678292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.077 3.923 3 H 0.071 0.929 4 C 0.028 3.972 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.489 5.489 14 C 0.043 3.957 15 C -0.123 4.123 16 C 0.080 3.920 17 H 0.051 0.949 18 N -0.526 5.526 19 C 0.015 3.985 20 C 0.060 3.940 21 N -0.688 5.688 22 C 0.060 3.940 23 C 0.016 3.984 24 C 0.037 3.963 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.015 0.985 29 H 0.022 0.978 30 H 0.257 0.743 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.030 0.970 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.336 0.664 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.030 0.970 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.792 0.506 18.719 20.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.031 4.031 3 H 0.089 0.911 4 C -0.009 4.009 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.213 5.213 14 C -0.085 4.085 15 C -0.162 4.162 16 C -0.029 4.029 17 H 0.069 0.931 18 N -0.251 5.251 19 C -0.115 4.115 20 C -0.070 4.070 21 N -0.316 5.316 22 C -0.070 4.070 23 C -0.114 4.114 24 C -0.092 4.092 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.034 0.966 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.048 0.952 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.153 0.847 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.049 0.951 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.321 0.614 18.513 20.307 hybrid contribution 1.937 -0.283 -0.374 1.993 sum -6.384 0.330 18.140 19.233 Atomic orbital electron populations 1.22536 0.99686 1.01139 1.01036 1.22027 0.90178 0.98798 0.92104 0.91097 1.19220 0.96438 0.95168 0.90062 1.21219 0.91707 1.37424 1.02857 0.91969 1.25017 0.98025 0.95934 0.95896 1.69970 1.35160 1.41265 1.08056 0.86626 0.86412 0.78322 0.76784 1.20952 1.21583 1.19998 1.64984 1.53882 1.01451 1.00943 1.22761 1.00279 0.91386 0.94097 1.22520 1.01369 0.96485 0.95800 1.22569 0.92812 0.96627 0.90873 0.93140 1.62195 1.49735 1.02065 1.11147 1.22858 0.98298 0.94341 0.95972 1.22109 0.98863 0.92620 0.93441 1.60754 1.40656 1.02960 1.27239 1.22108 0.99189 0.92847 0.92880 1.22845 0.97568 0.94325 0.96617 1.23257 0.98862 0.96376 0.90665 0.92861 0.93671 0.92446 0.96643 0.95970 0.93316 0.93345 0.89909 0.91111 0.91829 0.89805 0.95220 0.90431 0.90021 0.84664 0.90387 0.90000 0.95134 0.89897 0.91378 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.25 8.37 37.16 0.31 -2.94 16 2 C 0.08 1.60 2.47 -67.71 -0.17 1.43 16 3 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 4 C 0.03 0.72 4.25 -27.88 -0.12 0.60 16 5 C -0.49 -13.93 8.82 -34.44 -0.30 -14.23 16 6 H 0.06 1.77 7.72 -52.49 -0.41 1.36 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 9 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.49 -9.43 5.02 -222.51 -1.12 -10.54 16 14 C 0.04 0.78 5.06 -2.76 -0.01 0.76 16 15 C -0.12 -1.77 5.36 -25.38 -0.14 -1.91 16 16 C 0.08 1.11 2.75 -65.85 -0.18 0.93 16 17 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 18 N -0.53 -6.20 4.56 -224.26 -1.02 -7.22 16 19 C 0.02 0.15 5.32 -3.77 -0.02 0.13 16 20 C 0.06 0.53 6.72 -3.77 -0.03 0.50 16 21 N -0.69 -6.12 6.91 -113.63 -0.79 -6.90 16 22 C 0.06 0.54 6.72 -3.76 -0.03 0.51 16 23 C 0.02 0.17 5.48 -3.77 -0.02 0.15 16 24 C 0.04 0.58 5.04 -1.90 -0.01 0.57 16 25 H 0.05 0.93 5.96 -51.93 -0.31 0.62 16 26 H 0.04 0.71 6.35 -51.93 -0.33 0.38 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.02 0.41 6.73 -51.93 -0.35 0.06 16 29 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.05 0.89 5.29 -51.93 -0.27 0.62 16 32 H 0.08 1.69 8.12 -51.93 -0.42 1.27 16 33 H 0.07 0.96 7.33 -51.93 -0.38 0.58 16 34 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.08 0.85 6.50 -51.93 -0.34 0.52 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.34 2.66 8.89 -39.29 -0.35 2.31 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.88 7.18 -51.93 -0.37 0.51 16 44 H 0.07 1.05 7.95 -51.93 -0.41 0.64 16 45 H 0.06 0.89 5.59 -51.93 -0.29 0.60 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -29.91 333.92 -11.00 -40.92 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.02 Total: 0.30 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -0.81 Total: -12.12 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -2.19 Total: -51.28 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.91 -11.00 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710008545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.345 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds