Wall clock time and date at job start Mon Mar 30 2020 05:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47172 * 2 1 4 4 C 1.53000 * 109.47019 * 240.00140 * 2 1 3 5 5 C 1.50706 * 109.47405 * 175.94886 * 4 2 1 6 6 H 1.08000 * 119.99306 * 4.95823 * 5 4 2 7 7 C 1.37873 * 120.00370 * 184.94866 * 5 4 2 8 8 N 1.31518 * 119.99779 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46870 * 90.00442 * 9 7 5 11 11 H 1.48504 * 109.47098 * 210.00237 * 9 7 5 12 12 H 1.48493 * 109.47387 * 330.00500 * 9 7 5 13 13 N 1.46903 * 109.47488 * 120.00372 * 2 1 3 14 14 C 1.47901 * 110.99893 * 63.04459 * 13 2 1 15 15 C 1.53988 * 107.05503 * 214.15717 * 14 13 2 16 16 C 1.54595 * 105.14308 * 1.22798 * 15 14 13 17 17 H 1.08998 * 110.72654 * 263.59189 * 16 15 14 18 18 N 1.46911 * 110.72467 * 140.49080 * 16 15 14 19 19 C 1.46957 * 110.99594 * 55.21008 * 18 16 15 20 20 C 1.53052 * 109.36109 * 183.18861 * 19 18 16 21 21 N 1.46957 * 109.36419 * 301.59624 * 20 19 18 22 22 C 1.46959 * 110.87642 * 59.32473 * 21 20 19 23 23 C 1.46949 * 110.99899 * 179.00847 * 18 16 15 24 24 C 1.48535 * 110.99486 * 305.65302 * 13 2 1 25 25 H 1.09003 * 109.46610 * 186.74546 * 1 2 3 26 26 H 1.09001 * 109.46709 * 306.73833 * 1 2 3 27 27 H 1.08994 * 109.47100 * 66.74603 * 1 2 3 28 28 H 1.09000 * 109.46958 * 295.95102 * 4 2 1 29 29 H 1.08999 * 109.47630 * 55.94975 * 4 2 1 30 30 H 0.97003 * 119.99743 * 179.97438 * 8 7 5 31 31 H 1.08992 * 109.92105 * 333.51325 * 14 13 2 32 32 H 1.08997 * 109.91290 * 94.81226 * 14 13 2 33 33 H 1.09005 * 110.31096 * 120.14762 * 15 14 13 34 34 H 1.09008 * 110.31358 * 242.31081 * 15 14 13 35 35 H 1.09005 * 109.48611 * 303.14790 * 19 18 16 36 36 H 1.09001 * 109.49336 * 63.22098 * 19 18 16 37 37 H 1.08997 * 109.48796 * 181.62602 * 20 19 18 38 38 H 1.09006 * 109.50743 * 61.57516 * 20 19 18 39 39 H 1.00898 * 111.00040 * 295.45457 * 21 20 19 40 40 H 1.09003 * 109.48112 * 180.71220 * 22 21 20 41 41 H 1.08992 * 109.51314 * 60.65713 * 22 21 20 42 42 H 1.09002 * 109.48909 * 296.77791 * 23 18 16 43 43 H 1.08997 * 109.49415 * 56.84394 * 23 18 16 44 44 H 1.09007 * 110.66373 * 278.15531 * 24 13 2 45 45 H 1.08993 * 110.67066 * 41.28510 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5437 -0.6349 -1.3006 6 1 4.0871 -0.1881 -0.4811 7 6 4.2256 -1.1265 -2.3934 8 7 3.5637 -1.6703 -3.3913 9 14 6.0894 -1.0189 -2.4572 10 1 6.6768 -2.2416 -1.8529 11 1 6.5305 -0.9042 -3.8705 12 1 6.5426 0.1747 -1.6988 13 7 2.0198 -0.6926 1.1994 14 6 1.6064 -2.1126 1.1974 15 6 1.3513 -2.5108 2.6628 16 6 1.6141 -1.2264 3.4820 17 1 2.6286 -1.2239 3.8805 18 7 0.6317 -1.0907 4.5658 19 6 0.6186 -2.2882 5.4175 20 6 -0.4701 -2.1410 6.4832 21 7 -0.2115 -0.9339 7.2805 22 6 -0.1984 0.2635 6.4286 23 6 0.8903 0.1163 5.3630 24 6 1.4352 -0.1024 2.4307 25 1 -0.3633 -1.0206 0.1207 26 1 -0.3633 0.6147 0.8236 27 1 -0.3633 0.4057 -0.9441 28 1 1.7371 -1.7677 -1.2137 29 1 1.6186 -0.2511 -2.1378 30 1 4.0435 -2.0159 -4.1604 31 1 0.6926 -2.2326 0.6155 32 1 2.4007 -2.7299 0.7778 33 1 0.3193 -2.8374 2.7920 34 1 2.0394 -3.3002 2.9658 35 1 0.4126 -3.1670 4.8063 36 1 1.5886 -2.4007 5.9018 37 1 -0.4624 -3.0153 7.1340 38 1 -1.4434 -2.0560 5.9999 39 1 0.6510 -1.0197 7.7970 40 1 0.0074 1.1423 7.0399 41 1 -1.1683 0.3764 5.9444 42 1 1.8634 0.0311 5.8466 43 1 0.8826 0.9906 4.7121 44 1 1.9837 0.7919 2.7265 45 1 0.3789 0.1235 2.2851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710008545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:15 Heat of formation + Delta-G solvation = -6.122684 kcal Electronic energy + Delta-G solvation = -21574.934409 eV Core-core repulsion = 18626.091076 eV Total energy + Delta-G solvation = -2948.843334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.00892 -39.45288 -36.26934 -34.73486 -33.22732 -32.03276 -30.27221 -29.01400 -28.95282 -25.84625 -24.99236 -24.54209 -22.91038 -21.75168 -21.07667 -20.00629 -18.37904 -17.98941 -16.83097 -16.55902 -16.42028 -15.81825 -15.70098 -15.43844 -15.34190 -14.96140 -14.67688 -14.48097 -13.98532 -13.61527 -13.38513 -13.26042 -13.22840 -12.73735 -12.67901 -12.61458 -12.44442 -12.32767 -12.21693 -12.16226 -12.08934 -11.76516 -11.56631 -11.51239 -11.15766 -11.00890 -10.50247 -9.55810 -9.22981 -9.03762 -8.12352 -6.17944 1.40205 1.40858 1.52241 2.45449 2.66013 3.20117 3.36325 3.39502 3.56957 3.77593 4.07602 4.09641 4.17356 4.18528 4.23396 4.25406 4.37856 4.41453 4.46254 4.55002 4.60406 4.66103 4.70798 4.80354 4.85351 4.88308 4.92467 4.98917 5.06649 5.07042 5.16651 5.19701 5.22911 5.30259 5.44937 5.70411 5.87384 5.94115 5.97030 6.10567 6.25740 6.28920 6.45697 6.48537 6.96612 7.48558 8.99654 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.032708 B = 0.004122 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.844294 B = 6790.541001 C = 6982.678292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 H 0.063 0.937 4 C 0.036 3.964 5 C -0.505 4.505 6 H 0.057 0.943 7 C -0.004 4.004 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.267 1.267 13 N -0.512 5.512 14 C 0.045 3.955 15 C -0.111 4.111 16 C 0.091 3.909 17 H 0.041 0.959 18 N -0.530 5.530 19 C 0.016 3.984 20 C 0.065 3.935 21 N -0.691 5.691 22 C 0.066 3.934 23 C 0.017 3.983 24 C 0.043 3.957 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.056 0.944 28 H -0.005 1.005 29 H -0.006 1.006 30 H 0.259 0.741 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.030 0.970 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.344 0.656 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.030 0.970 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.853 0.802 20.943 22.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.023 4.023 3 H 0.081 0.919 4 C -0.001 4.001 5 C -0.543 4.543 6 H 0.076 0.924 7 C -0.200 4.200 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.236 5.236 14 C -0.084 4.084 15 C -0.149 4.149 16 C -0.018 4.018 17 H 0.059 0.941 18 N -0.255 5.255 19 C -0.114 4.114 20 C -0.065 4.065 21 N -0.319 5.319 22 C -0.064 4.064 23 C -0.113 4.113 24 C -0.084 4.084 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.013 0.987 29 H 0.012 0.988 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.048 0.952 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.162 0.838 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.387 0.915 20.765 22.414 hybrid contribution 1.940 -0.375 -1.049 2.237 sum -6.447 0.540 19.716 20.751 Atomic orbital electron populations 1.22389 0.97070 1.01709 1.02045 1.21718 0.92215 0.97554 0.90818 0.91854 1.19057 0.95317 0.94199 0.91558 1.21510 0.93149 1.36998 1.02645 0.92433 1.25860 1.02953 0.95597 0.95571 1.70095 1.37091 1.42235 1.08700 0.85563 0.80530 0.78610 0.76997 1.20323 1.21027 1.19136 1.64836 1.55041 1.02081 1.01600 1.22661 0.98643 0.90524 0.96543 1.22410 1.02404 0.97008 0.93063 1.22354 0.92981 0.95309 0.91177 0.94070 1.62193 1.48602 1.03307 1.11410 1.22916 0.98855 0.93550 0.96053 1.22090 0.97823 0.93323 0.93239 1.60751 1.41159 1.02897 1.27140 1.22076 0.98150 0.93581 0.92599 1.22894 0.98161 0.93489 0.96742 1.23235 0.98838 0.96944 0.89430 0.92830 0.91156 0.92540 0.98703 0.98759 0.93194 0.93989 0.93176 0.89764 0.90906 0.89779 0.95191 0.88722 0.90771 0.83847 0.88784 0.90757 0.95159 0.90249 0.91045 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.98 8.37 71.98 0.60 -5.37 16 2 C 0.09 3.58 2.47 44.92 0.11 3.70 16 3 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 4 C 0.04 1.90 4.25 29.85 0.13 2.03 16 5 C -0.50 -29.14 8.82 25.60 0.23 -28.92 16 6 H 0.06 3.31 7.72 -2.91 -0.02 3.29 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.94 -58.11 13.29 21.45 0.28 -57.83 16 9 Si 0.96 45.92 29.54 68.60 2.03 47.94 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 13 N -0.51 -19.72 5.02 -857.88 -4.30 -24.03 16 14 C 0.04 1.63 5.06 86.44 0.44 2.07 16 15 C -0.11 -3.04 5.36 31.47 0.17 -2.87 16 16 C 0.09 2.39 2.75 46.12 0.13 2.51 16 17 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 18 N -0.53 -11.33 4.56 -863.43 -3.94 -15.27 16 19 C 0.02 0.28 5.32 86.31 0.46 0.74 16 20 C 0.07 0.98 6.72 86.31 0.58 1.56 16 21 N -0.69 -10.43 6.91 -513.42 -3.55 -13.98 16 22 C 0.07 1.02 6.72 86.31 0.58 1.60 16 23 C 0.02 0.31 5.48 86.31 0.47 0.78 16 24 C 0.04 1.31 5.04 86.65 0.44 1.75 16 25 H 0.05 1.84 5.96 -2.39 -0.01 1.82 16 26 H 0.07 2.07 6.35 -2.39 -0.02 2.05 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H -0.01 -0.30 6.73 -2.39 -0.02 -0.32 16 29 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.04 1.57 5.29 -2.39 -0.01 1.56 16 32 H 0.05 2.13 8.12 -2.39 -0.02 2.11 16 33 H 0.08 2.11 7.33 -2.38 -0.02 2.10 16 34 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.08 1.51 6.50 -2.38 -0.02 1.49 16 36 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.34 4.46 8.89 -89.70 -0.80 3.67 16 40 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.08 1.53 7.18 -2.39 -0.02 1.51 16 44 H 0.07 2.10 7.95 -2.38 -0.02 2.08 16 45 H 0.06 1.81 5.59 -2.39 -0.01 1.80 16 Total: -1.00 -64.69 333.92 -4.53 -69.22 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.16 Total: 14.12 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 4.79 Total: -20.18 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -11.50 Total: -111.10 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -64.69 -4.53 -69.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710008545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.094 kcal (2) G-P(sol) polarization free energy of solvation -64.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds