Wall clock time and date at job start Mon Mar 30 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47152 * 2 1 4 4 C 1.52999 * 109.46938 * 119.99917 * 2 1 3 5 5 C 1.50702 * 109.47339 * 294.43949 * 4 2 1 6 6 H 1.07998 * 119.99381 * 355.55849 * 5 4 2 7 7 C 1.37874 * 119.99973 * 175.56028 * 5 4 2 8 8 N 1.31513 * 120.00008 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00077 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47122 * 270.00377 * 9 7 5 11 11 H 1.48497 * 109.47562 * 149.99822 * 9 7 5 12 12 H 1.48503 * 109.46843 * 29.99525 * 9 7 5 13 13 N 1.46902 * 109.46821 * 240.00004 * 2 1 3 14 14 C 1.47845 * 110.99723 * 183.70627 * 13 2 1 15 15 C 1.54910 * 104.79669 * 213.63792 * 14 13 2 16 16 C 1.55144 * 101.64893 * 37.06769 * 15 14 13 17 17 H 1.09001 * 110.70512 * 82.73622 * 16 15 14 18 18 N 1.46905 * 110.85039 * 205.89431 * 16 15 14 19 19 C 1.46955 * 110.99858 * 164.88953 * 18 16 15 20 20 C 1.53046 * 109.36719 * 183.19127 * 19 18 16 21 21 N 1.46958 * 109.36303 * 301.59979 * 20 19 18 22 22 C 1.46958 * 110.88381 * 59.31610 * 21 20 19 23 23 C 1.46954 * 111.00148 * 288.68698 * 18 16 15 24 24 C 1.47442 * 111.00035 * 62.86513 * 13 2 1 25 25 H 1.08996 * 109.47507 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47308 * 300.00387 * 1 2 3 27 27 H 1.08999 * 109.46836 * 59.99639 * 1 2 3 28 28 H 1.09000 * 109.47032 * 174.43594 * 4 2 1 29 29 H 1.09004 * 109.46776 * 54.43457 * 4 2 1 30 30 H 0.97000 * 119.99987 * 0.02562 * 8 7 5 31 31 H 1.09005 * 110.37005 * 332.46435 * 14 13 2 32 32 H 1.08998 * 110.37851 * 94.80476 * 14 13 2 33 33 H 1.08997 * 110.98640 * 278.97991 * 15 14 13 34 34 H 1.08994 * 110.98972 * 155.15723 * 15 14 13 35 35 H 1.09007 * 109.48815 * 303.15627 * 19 18 16 36 36 H 1.08998 * 109.49196 * 63.22119 * 19 18 16 37 37 H 1.09001 * 109.49419 * 181.63014 * 20 19 18 38 38 H 1.09006 * 109.51102 * 61.57358 * 20 19 18 39 39 H 1.00907 * 110.99744 * 295.45275 * 21 20 19 40 40 H 1.08995 * 109.48879 * 180.71645 * 22 21 20 41 41 H 1.09001 * 109.50242 * 60.65786 * 22 21 20 42 42 H 1.08997 * 109.49127 * 296.78250 * 23 18 16 43 43 H 1.09003 * 109.49103 * 56.82701 * 23 18 16 44 44 H 1.09001 * 109.88868 * 242.66372 * 24 13 2 45 45 H 1.08999 * 109.88691 * 3.68303 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6532 0.0642 2.4759 6 1 1.1625 1.0206 2.3720 7 6 1.9258 -0.4383 3.7305 8 7 2.5230 -1.6032 3.8569 9 14 1.4471 0.5356 5.2510 10 1 2.5668 1.4310 5.6382 11 1 1.1532 -0.4001 6.3660 12 1 0.2407 1.3503 4.9574 13 7 2.0196 -0.6925 -1.1995 14 6 3.4948 -0.7900 -1.1899 15 6 3.9078 -0.6882 -2.6794 16 6 2.8850 0.3466 -3.2180 17 1 3.2172 1.3629 -3.0061 18 7 2.6657 0.1637 -4.6590 19 6 1.4611 0.8787 -5.1033 20 6 1.2237 0.5989 -6.5891 21 7 2.4002 1.0258 -7.3593 22 6 3.6048 0.3108 -6.9151 23 6 3.8421 0.5907 -5.4293 24 6 1.6038 0.0146 -2.4246 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.1254 -0.8083 1.2009 29 1 1.5975 -1.7161 1.3004 30 1 2.7719 -2.1087 3.0673 31 1 3.9258 0.0330 -0.6195 32 1 3.8093 -1.7469 -0.7734 33 1 3.7936 -1.6483 -3.1827 34 1 4.9277 -0.3165 -2.7773 35 1 0.6016 0.5362 -4.5269 36 1 1.5973 1.9496 -4.9522 37 1 0.3472 1.1513 -6.9278 38 1 1.0602 -0.4687 -6.7369 39 1 2.5294 2.0247 -7.2982 40 1 4.4642 0.6534 -7.4914 41 1 3.4689 -0.7600 -7.0663 42 1 4.0054 1.6583 -5.2818 43 1 4.7187 0.0386 -5.0904 44 1 0.9543 -0.6265 -3.0205 45 1 1.0786 0.9331 -2.1624 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710008548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:19 Heat of formation + Delta-G solvation = 5.231039 kcal Electronic energy + Delta-G solvation = -21357.221885 eV Core-core repulsion = 18408.870886 eV Total energy + Delta-G solvation = -2948.350999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.98823 -38.27969 -35.11197 -33.37882 -31.88481 -31.30022 -28.84397 -28.19762 -26.36003 -25.00391 -23.67163 -23.09593 -21.31356 -20.89085 -20.21894 -19.15726 -17.11573 -16.63891 -15.92502 -15.44820 -15.07379 -14.73870 -14.55590 -14.21500 -13.81952 -13.71947 -13.44467 -13.05319 -12.90448 -12.50596 -12.27563 -11.85819 -11.79571 -11.53519 -11.49440 -11.40821 -11.18295 -11.12085 -10.81711 -10.68629 -10.62877 -10.56782 -10.13261 -10.05170 -9.49186 -8.83614 -8.55554 -8.47409 -8.30309 -7.77782 -6.34022 -4.02532 3.42999 3.46783 3.54368 3.62444 3.99427 4.38725 4.50422 4.59304 4.77388 4.85859 4.87607 4.97664 5.01128 5.08921 5.18755 5.29336 5.38166 5.42985 5.52934 5.58937 5.62602 5.72167 5.76053 5.86600 5.89335 5.90601 6.02151 6.06757 6.23707 6.27562 6.36046 6.59965 6.61058 6.79109 6.86424 6.91010 7.01767 7.04225 7.31579 7.43296 7.59209 7.74781 8.26261 8.48171 8.90763 9.69144 11.06762 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.043749 B = 0.003658 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.867450 B = 7652.700778 C = 7976.815940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.087 3.913 3 H 0.026 0.974 4 C 0.019 3.981 5 C -0.598 4.598 6 H 0.048 0.952 7 C 0.015 3.985 8 N -0.913 5.913 9 Si 1.070 2.930 10 H -0.289 1.289 11 H -0.284 1.284 12 H -0.289 1.289 13 N -0.523 5.523 14 C 0.050 3.950 15 C -0.117 4.117 16 C 0.061 3.939 17 H 0.043 0.957 18 N -0.520 5.520 19 C 0.012 3.988 20 C 0.060 3.940 21 N -0.688 5.688 22 C 0.060 3.940 23 C 0.016 3.984 24 C 0.052 3.948 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.030 0.970 28 H 0.006 0.994 29 H 0.017 0.983 30 H 0.270 0.730 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.029 0.971 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.336 0.664 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.029 0.971 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.877 5.373 -20.257 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.020 4.020 3 H 0.044 0.956 4 C -0.018 4.018 5 C -0.637 4.637 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.550 5.550 9 Si 0.899 3.101 10 H -0.216 1.216 11 H -0.210 1.210 12 H -0.215 1.215 13 N -0.248 5.248 14 C -0.078 4.078 15 C -0.155 4.155 16 C -0.048 4.048 17 H 0.061 0.939 18 N -0.245 5.245 19 C -0.118 4.118 20 C -0.070 4.070 21 N -0.316 5.316 22 C -0.070 4.070 23 C -0.114 4.114 24 C -0.077 4.077 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.024 0.976 29 H 0.035 0.965 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.047 0.953 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.153 0.847 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.047 0.953 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.468 3.920 -19.212 19.613 hybrid contribution 0.672 2.294 -0.515 2.445 sum 1.140 6.214 -19.727 20.714 Atomic orbital electron populations 1.21725 0.95087 1.01620 1.00075 1.21882 0.95235 0.94887 0.90037 0.95591 1.19281 0.95380 0.96146 0.91029 1.22017 1.42935 1.06568 0.92188 0.93407 1.25793 0.94702 0.97123 1.01240 1.70736 1.37926 1.12587 1.33711 0.83533 0.76064 0.75131 0.75419 1.21589 1.20979 1.21538 1.63735 1.09660 1.49676 1.01727 1.22921 0.88386 1.01855 0.94675 1.22745 0.97171 0.99551 0.96028 1.22954 0.97479 0.97445 0.86915 0.93936 1.62187 1.02763 1.56512 1.03073 1.22912 0.94503 0.95892 0.98446 1.22114 0.93092 1.02459 0.89338 1.60753 1.03941 1.10238 1.56637 1.22104 0.92576 1.00458 0.91846 1.22857 0.94268 0.98281 0.95947 1.22881 0.95673 0.97378 0.91734 0.92711 0.91470 0.95058 0.97561 0.96458 0.91976 0.93562 0.90142 0.89814 0.91713 0.89501 0.95271 0.90295 0.89845 0.84677 0.90376 0.89879 0.95305 0.90010 0.90198 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.93 37.16 0.33 -2.20 16 2 C 0.09 1.86 1.63 -67.71 -0.11 1.75 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 4 C 0.02 0.49 3.72 -27.88 -0.10 0.39 16 5 C -0.60 -16.98 8.33 -34.44 -0.29 -17.26 16 6 H 0.05 1.34 7.27 -52.49 -0.38 0.96 16 7 C 0.02 0.44 5.46 -17.82 -0.10 0.35 16 8 N -0.91 -28.18 13.65 55.43 0.76 -27.42 16 9 Si 1.07 25.49 29.90 -169.99 -5.08 20.41 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.52 -9.71 5.03 -223.29 -1.12 -10.83 16 14 C 0.05 0.86 5.27 -2.30 -0.01 0.85 16 15 C -0.12 -1.59 5.92 -24.59 -0.15 -1.74 16 16 C 0.06 0.82 2.65 -65.89 -0.17 0.65 16 17 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 18 N -0.52 -5.96 4.56 -224.31 -1.02 -6.98 16 19 C 0.01 0.12 5.25 -3.77 -0.02 0.10 16 20 C 0.06 0.53 6.72 -3.77 -0.03 0.50 16 21 N -0.69 -5.94 6.91 -113.63 -0.79 -6.73 16 22 C 0.06 0.51 6.72 -3.77 -0.03 0.48 16 23 C 0.02 0.16 5.50 -3.77 -0.02 0.14 16 24 C 0.05 0.79 4.61 -2.84 -0.01 0.78 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.07 1.41 7.08 -51.93 -0.37 1.04 16 27 H 0.03 0.53 6.67 -51.93 -0.35 0.18 16 28 H 0.01 0.17 6.65 -51.93 -0.35 -0.18 16 29 H 0.02 0.48 7.84 -51.93 -0.41 0.07 16 30 H 0.27 8.33 7.20 -40.82 -0.29 8.04 16 31 H 0.05 0.86 7.48 -51.93 -0.39 0.47 16 32 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.09 0.92 6.26 -51.92 -0.33 0.60 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.34 2.57 8.89 -39.29 -0.35 2.23 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.79 7.42 -51.93 -0.39 0.40 16 44 H 0.08 1.22 7.01 -51.93 -0.36 0.85 16 45 H 0.05 0.76 6.53 -51.93 -0.34 0.42 16 LS Contribution 335.96 15.07 5.06 5.06 Total: -1.00 -30.40 335.96 -11.05 -41.45 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.16 Total: 0.27 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -0.70 Total: -15.22 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -2.17 Total: -51.97 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.41 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.40 -11.05 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710008548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.680 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds