Wall clock time and date at job start Mon Mar 30 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47152 * 2 1 4 4 C 1.52999 * 109.46938 * 119.99917 * 2 1 3 5 5 C 1.50702 * 109.47339 * 294.43949 * 4 2 1 6 6 H 1.07998 * 119.99381 * 355.55849 * 5 4 2 7 7 C 1.37874 * 119.99973 * 175.56028 * 5 4 2 8 8 N 1.31513 * 120.00008 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00077 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47122 * 270.00377 * 9 7 5 11 11 H 1.48497 * 109.47562 * 149.99822 * 9 7 5 12 12 H 1.48503 * 109.46843 * 29.99525 * 9 7 5 13 13 N 1.46902 * 109.46821 * 240.00004 * 2 1 3 14 14 C 1.47845 * 110.99723 * 183.70627 * 13 2 1 15 15 C 1.54910 * 104.79669 * 213.63792 * 14 13 2 16 16 C 1.55144 * 101.64893 * 37.06769 * 15 14 13 17 17 H 1.09001 * 110.70512 * 82.73622 * 16 15 14 18 18 N 1.46905 * 110.85039 * 205.89431 * 16 15 14 19 19 C 1.46955 * 110.99858 * 164.88953 * 18 16 15 20 20 C 1.53046 * 109.36719 * 183.19127 * 19 18 16 21 21 N 1.46958 * 109.36303 * 301.59979 * 20 19 18 22 22 C 1.46958 * 110.88381 * 59.31610 * 21 20 19 23 23 C 1.46954 * 111.00148 * 288.68698 * 18 16 15 24 24 C 1.47442 * 111.00035 * 62.86513 * 13 2 1 25 25 H 1.08996 * 109.47507 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47308 * 300.00387 * 1 2 3 27 27 H 1.08999 * 109.46836 * 59.99639 * 1 2 3 28 28 H 1.09000 * 109.47032 * 174.43594 * 4 2 1 29 29 H 1.09004 * 109.46776 * 54.43457 * 4 2 1 30 30 H 0.97000 * 119.99987 * 0.02562 * 8 7 5 31 31 H 1.09005 * 110.37005 * 332.46435 * 14 13 2 32 32 H 1.08998 * 110.37851 * 94.80476 * 14 13 2 33 33 H 1.08997 * 110.98640 * 278.97991 * 15 14 13 34 34 H 1.08994 * 110.98972 * 155.15723 * 15 14 13 35 35 H 1.09007 * 109.48815 * 303.15627 * 19 18 16 36 36 H 1.08998 * 109.49196 * 63.22119 * 19 18 16 37 37 H 1.09001 * 109.49419 * 181.63014 * 20 19 18 38 38 H 1.09006 * 109.51102 * 61.57358 * 20 19 18 39 39 H 1.00907 * 110.99744 * 295.45275 * 21 20 19 40 40 H 1.08995 * 109.48879 * 180.71645 * 22 21 20 41 41 H 1.09001 * 109.50242 * 60.65786 * 22 21 20 42 42 H 1.08997 * 109.49127 * 296.78250 * 23 18 16 43 43 H 1.09003 * 109.49103 * 56.82701 * 23 18 16 44 44 H 1.09001 * 109.88868 * 242.66372 * 24 13 2 45 45 H 1.08999 * 109.88691 * 3.68303 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6532 0.0642 2.4759 6 1 1.1625 1.0206 2.3720 7 6 1.9258 -0.4383 3.7305 8 7 2.5230 -1.6032 3.8569 9 14 1.4471 0.5356 5.2510 10 1 2.5668 1.4310 5.6382 11 1 1.1532 -0.4001 6.3660 12 1 0.2407 1.3503 4.9574 13 7 2.0196 -0.6925 -1.1995 14 6 3.4948 -0.7900 -1.1899 15 6 3.9078 -0.6882 -2.6794 16 6 2.8850 0.3466 -3.2180 17 1 3.2172 1.3629 -3.0061 18 7 2.6657 0.1637 -4.6590 19 6 1.4611 0.8787 -5.1033 20 6 1.2237 0.5989 -6.5891 21 7 2.4002 1.0258 -7.3593 22 6 3.6048 0.3108 -6.9151 23 6 3.8421 0.5907 -5.4293 24 6 1.6038 0.0146 -2.4246 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.1254 -0.8083 1.2009 29 1 1.5975 -1.7161 1.3004 30 1 2.7719 -2.1087 3.0673 31 1 3.9258 0.0330 -0.6195 32 1 3.8093 -1.7469 -0.7734 33 1 3.7936 -1.6483 -3.1827 34 1 4.9277 -0.3165 -2.7773 35 1 0.6016 0.5362 -4.5269 36 1 1.5973 1.9496 -4.9522 37 1 0.3472 1.1513 -6.9278 38 1 1.0602 -0.4687 -6.7369 39 1 2.5294 2.0247 -7.2982 40 1 4.4642 0.6534 -7.4914 41 1 3.4689 -0.7600 -7.0663 42 1 4.0054 1.6583 -5.2818 43 1 4.7187 0.0386 -5.0904 44 1 0.9543 -0.6265 -3.0205 45 1 1.0786 0.9331 -2.1624 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710008548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:19 Heat of formation + Delta-G solvation = -17.756082 kcal Electronic energy + Delta-G solvation = -21358.218682 eV Core-core repulsion = 18408.870886 eV Total energy + Delta-G solvation = -2949.347796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.06548 -39.43534 -36.57774 -34.98527 -33.44727 -32.09360 -30.34797 -29.44612 -28.16214 -26.09214 -24.98760 -24.51156 -22.71133 -21.78639 -21.39864 -20.66509 -18.96410 -17.87740 -17.36651 -16.37404 -15.90439 -15.72977 -15.64815 -15.58033 -15.39713 -15.14206 -14.86138 -14.47484 -14.22062 -13.81999 -13.53435 -13.41603 -13.15106 -13.09086 -12.68834 -12.57097 -12.40207 -12.28723 -12.25178 -12.06717 -11.95552 -11.90723 -11.85054 -11.59628 -11.37919 -10.71235 -10.54241 -9.62873 -9.29634 -9.27039 -8.68457 -6.38024 1.50622 1.60031 1.77516 2.54163 2.63889 3.01965 3.16419 3.33684 3.40550 3.70197 3.94626 4.03222 4.08322 4.13329 4.15992 4.20865 4.25990 4.30015 4.38452 4.41642 4.50669 4.54656 4.62415 4.71980 4.78972 4.80720 4.86523 4.89828 4.92769 5.03710 5.05906 5.10582 5.16776 5.21441 5.24493 5.48387 5.84929 5.89991 5.94842 6.06012 6.07491 6.17218 6.22878 6.42522 6.58111 7.43480 8.72185 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.043749 B = 0.003658 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.867450 B = 7652.700778 C = 7976.815940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.098 3.902 3 H 0.018 0.982 4 C 0.026 3.974 5 C -0.609 4.609 6 H 0.051 0.949 7 C -0.039 4.039 8 N -0.938 5.938 9 Si 1.119 2.881 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.268 1.268 13 N -0.535 5.535 14 C 0.046 3.954 15 C -0.101 4.101 16 C 0.072 3.928 17 H 0.039 0.961 18 N -0.526 5.526 19 C 0.013 3.987 20 C 0.066 3.934 21 N -0.691 5.691 22 C 0.065 3.935 23 C 0.017 3.983 24 C 0.055 3.945 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.064 0.936 28 H -0.012 1.012 29 H -0.012 1.012 30 H 0.254 0.746 31 H 0.029 0.971 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.030 0.970 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.344 0.656 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.030 0.970 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.487 6.897 -21.797 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.010 4.010 3 H 0.036 0.964 4 C -0.011 4.011 5 C -0.647 4.647 6 H 0.069 0.931 7 C -0.236 4.236 8 N -0.576 5.576 9 Si 0.940 3.060 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.192 1.192 13 N -0.260 5.260 14 C -0.082 4.082 15 C -0.140 4.140 16 C -0.038 4.038 17 H 0.057 0.943 18 N -0.251 5.251 19 C -0.117 4.117 20 C -0.064 4.064 21 N -0.319 5.319 22 C -0.065 4.065 23 C -0.112 4.112 24 C -0.072 4.072 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.006 0.994 29 H 0.006 0.994 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.048 0.952 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.161 0.839 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.080 5.453 -20.798 21.501 hybrid contribution 0.812 1.793 -0.111 1.972 sum 0.891 7.247 -20.908 22.146 Atomic orbital electron populations 1.21629 0.93717 1.01370 1.01006 1.21601 0.96237 0.93725 0.89475 0.96428 1.19137 0.94019 0.94910 0.93036 1.22389 1.42322 1.06762 0.93226 0.93077 1.27402 0.93920 0.97229 1.05082 1.70878 1.39922 1.13849 1.32933 0.82915 0.77057 0.74252 0.71748 1.19907 1.20866 1.19243 1.63649 1.10445 1.49967 1.01893 1.22900 0.87795 1.00302 0.97167 1.22635 0.98364 0.99998 0.92981 1.22752 0.95932 0.96903 0.88199 0.94328 1.62191 1.03963 1.57127 1.01841 1.22951 0.93684 0.95694 0.99335 1.22079 0.93824 1.02205 0.88313 1.60749 1.03901 1.10839 1.56431 1.22091 0.93203 1.00067 0.91104 1.22918 0.93548 0.98307 0.96468 1.22873 0.96773 0.97166 0.90425 0.93500 0.92875 0.91727 0.99429 0.99363 0.93619 0.95267 0.91741 0.89607 0.89737 0.90005 0.95215 0.88750 0.90702 0.83850 0.88605 0.90690 0.95188 0.89820 0.89632 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.69 8.93 71.98 0.64 -4.05 16 2 C 0.10 4.23 1.63 44.92 0.07 4.30 16 3 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 4 C 0.03 1.42 3.72 29.85 0.11 1.53 16 5 C -0.61 -35.12 8.33 25.60 0.21 -34.90 16 6 H 0.05 2.86 7.27 -2.91 -0.02 2.84 16 7 C -0.04 -2.30 5.46 84.65 0.46 -1.84 16 8 N -0.94 -59.39 13.65 21.45 0.29 -59.09 16 9 Si 1.12 50.91 29.90 68.60 2.05 52.96 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 13 N -0.53 -19.92 5.03 -860.36 -4.33 -24.25 16 14 C 0.05 1.63 5.27 86.77 0.46 2.09 16 15 C -0.10 -2.66 5.92 31.98 0.19 -2.47 16 16 C 0.07 1.80 2.65 46.09 0.12 1.93 16 17 H 0.04 1.02 8.12 -2.39 -0.02 1.00 16 18 N -0.53 -10.97 4.56 -863.59 -3.94 -14.91 16 19 C 0.01 0.23 5.25 86.31 0.45 0.69 16 20 C 0.07 1.00 6.72 86.31 0.58 1.58 16 21 N -0.69 -10.16 6.91 -513.43 -3.55 -13.71 16 22 C 0.07 0.94 6.72 86.31 0.58 1.52 16 23 C 0.02 0.29 5.50 86.31 0.47 0.77 16 24 C 0.06 1.63 4.61 86.64 0.40 2.03 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 26 H 0.05 2.21 7.08 -2.39 -0.02 2.19 16 27 H 0.06 2.08 6.67 -2.39 -0.02 2.06 16 28 H -0.01 -0.71 6.65 -2.39 -0.02 -0.73 16 29 H -0.01 -0.71 7.84 -2.38 -0.02 -0.73 16 30 H 0.25 16.44 7.20 -92.71 -0.67 15.77 16 31 H 0.03 1.11 7.48 -2.38 -0.02 1.09 16 32 H 0.06 2.43 8.11 -2.39 -0.02 2.41 16 33 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.08 1.90 8.07 -2.39 -0.02 1.88 16 35 H 0.08 1.57 6.26 -2.38 -0.01 1.56 16 36 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.29 8.14 -2.38 -0.02 1.28 16 39 H 0.34 4.31 8.89 -89.69 -0.80 3.52 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.08 1.40 7.42 -2.39 -0.02 1.38 16 44 H 0.09 2.45 7.01 -2.39 -0.02 2.44 16 45 H 0.05 1.48 6.53 -2.39 -0.02 1.46 16 Total: -1.00 -66.16 335.96 -4.46 -70.62 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.25 Total: 15.20 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 4.76 Total: -26.83 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -11.52 Total: -111.96 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.96 kcal Total: -66.16 -4.46 -70.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710008548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.863 kcal (2) G-P(sol) polarization free energy of solvation -66.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds