Wall clock time and date at job start Mon Mar 30 2020 04:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46855 * 2 1 4 4 C 1.50703 * 109.47240 * 239.99563 * 2 1 3 5 5 C 1.34670 * 125.98579 * 85.75537 * 4 2 1 6 6 N 1.36877 * 106.81517 * 179.73253 * 5 4 2 7 7 C 1.46503 * 126.39600 * 179.97438 * 6 5 4 8 8 C 1.35045 * 107.20699 * 0.02562 * 6 5 4 9 9 N 1.30498 * 108.69881 * 359.97438 * 8 6 5 10 10 N 1.46904 * 109.46831 * 119.99986 * 2 1 3 11 11 C 1.46903 * 110.99785 * 307.55123 * 10 2 1 12 12 C 1.46895 * 110.99735 * 183.60238 * 10 2 1 13 13 C 1.52996 * 109.47044 * 189.99607 * 12 10 2 14 14 O 1.42899 * 109.47198 * 65.00015 * 13 12 10 15 15 C 1.42900 * 114.00346 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47157 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00119 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99761 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99852 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99794 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46812 * 90.00538 * 20 18 16 22 22 H 1.48502 * 109.47416 * 210.00547 * 20 18 16 23 23 H 1.48499 * 109.47544 * 330.00882 * 20 18 16 24 24 H 1.08995 * 109.47682 * 300.00363 * 1 2 3 25 25 H 1.08999 * 109.47258 * 60.00463 * 1 2 3 26 26 H 1.09010 * 109.47281 * 179.97438 * 1 2 3 27 27 H 1.07994 * 126.59309 * 359.76089 * 5 4 2 28 28 H 1.09003 * 109.47124 * 90.00610 * 7 6 5 29 29 H 1.09000 * 109.46816 * 210.00171 * 7 6 5 30 30 H 1.08998 * 109.46939 * 330.00512 * 7 6 5 31 31 H 1.07997 * 125.64962 * 179.97438 * 8 6 5 32 32 H 1.09007 * 109.46465 * 65.87494 * 11 10 2 33 33 H 1.08997 * 109.46827 * 185.86974 * 11 10 2 34 34 H 1.08998 * 109.47764 * 305.87650 * 11 10 2 35 35 H 1.08999 * 109.47184 * 310.00041 * 12 10 2 36 36 H 1.09004 * 109.47286 * 69.99553 * 12 10 2 37 37 H 1.08999 * 109.47175 * 184.99995 * 13 12 10 38 38 H 1.09005 * 109.47557 * 304.99886 * 13 12 10 39 39 H 1.08996 * 109.47422 * 300.00364 * 15 14 13 40 40 H 1.09003 * 109.46755 * 60.00446 * 15 14 13 41 41 H 0.97003 * 119.99907 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.2201 -0.1559 -2.4432 6 7 2.6882 -1.1467 -3.2635 7 6 3.0349 -1.0108 -4.6804 8 6 2.7697 -2.2731 -2.5230 9 7 2.3761 -2.0046 -1.3082 10 7 2.0196 -0.6925 1.1995 11 6 1.4070 -0.1383 2.4142 12 6 3.4855 -0.6379 1.2773 13 6 3.9723 -1.5704 2.3884 14 8 3.6620 -2.9225 2.0456 15 6 4.0770 -3.8796 3.0221 16 6 3.7009 -5.2639 2.5602 17 1 3.1958 -5.3993 1.6152 18 6 4.0025 -6.3578 3.3435 19 7 4.6180 -6.1929 4.4940 20 14 3.5357 -8.0735 2.7714 21 1 4.6486 -8.6494 1.9744 22 1 3.2748 -8.9353 3.9523 23 1 2.3126 -8.0000 1.9324 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 2.0370 0.8728 -2.7160 28 1 4.0856 -0.7359 -4.7726 29 1 2.8613 -1.9589 -5.1894 30 1 2.4157 -0.2365 -5.1332 31 1 3.1051 -3.2365 -2.8776 32 1 0.3372 -0.3474 2.4093 33 1 1.8626 -0.5961 3.2922 34 1 1.5664 0.9396 2.4424 35 1 3.9119 -0.9536 0.3252 36 1 3.8001 0.3826 1.4956 37 1 5.0507 -1.4636 2.5058 38 1 3.4774 -1.3100 3.3241 39 1 5.1576 -3.8207 3.1523 40 1 3.5846 -3.6674 3.9711 41 1 4.8299 -6.9624 5.0453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710141143.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:28 Heat of formation + Delta-G solvation = 32.794070 kcal Electronic energy + Delta-G solvation = -20742.915314 eV Core-core repulsion = 17659.926443 eV Total energy + Delta-G solvation = -3082.988871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.90643 -37.97386 -36.01801 -33.85562 -32.59116 -31.59652 -29.27205 -28.11635 -27.17867 -26.42271 -25.54460 -22.30999 -22.04911 -21.06589 -20.63974 -19.26693 -17.05000 -16.18855 -15.90279 -15.62273 -15.36823 -14.89940 -14.40337 -14.15379 -13.96517 -13.70956 -13.48365 -13.22894 -12.87778 -12.73205 -12.70343 -12.11402 -11.95604 -11.71221 -11.33803 -11.30794 -11.02803 -10.85313 -10.65964 -10.52754 -10.14563 -9.76310 -9.44760 -9.30409 -8.85498 -8.57147 -8.21603 -7.88962 -7.74276 -5.92929 -3.91811 2.15233 2.85941 3.41973 3.43047 3.46089 3.53896 4.21595 4.51970 4.54168 4.78433 4.90586 4.95341 5.11215 5.14316 5.18745 5.39556 5.43527 5.44550 5.60621 5.68303 5.72095 5.86598 5.90785 5.99510 6.03967 6.16993 6.28562 6.33752 6.38274 6.46479 6.61404 6.84536 7.31142 7.33339 7.54040 7.58216 7.66125 8.01716 8.39837 8.46220 8.88685 9.26384 9.72368 11.19215 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.017058 B = 0.005019 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.063130 B = 5577.803777 C = 6573.754869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.167 3.833 3 H 0.041 0.959 4 C 0.018 3.982 5 C -0.070 4.070 6 N -0.470 5.470 7 C 0.076 3.924 8 C 0.174 3.826 9 N -0.435 5.435 10 N -0.506 5.506 11 C 0.021 3.979 12 C 0.068 3.932 13 C 0.069 3.931 14 O -0.366 6.366 15 C 0.193 3.807 16 C -0.500 4.500 17 H 0.068 0.932 18 C 0.053 3.947 19 N -0.904 5.904 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.271 1.271 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.167 0.833 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.202 0.798 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.015 0.985 35 H 0.082 0.918 36 H 0.027 0.973 37 H 0.032 0.968 38 H 0.033 0.967 39 H -0.002 1.002 40 H 0.000 1.000 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 16.167 -15.739 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.057 3.943 3 H 0.059 0.941 4 C -0.113 4.113 5 C -0.202 4.202 6 N -0.154 5.154 7 C -0.067 4.067 8 C -0.108 4.108 9 N -0.151 5.151 10 N -0.230 5.230 11 C -0.127 4.127 12 C -0.060 4.060 13 C -0.009 4.009 14 O -0.285 6.285 15 C 0.118 3.882 16 C -0.539 4.539 17 H 0.086 0.914 18 C -0.147 4.147 19 N -0.544 5.544 20 Si 0.733 3.267 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.196 1.196 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.184 0.816 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.219 0.781 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.033 0.967 35 H 0.100 0.900 36 H 0.045 0.955 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.016 0.984 40 H 0.018 0.982 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.055 14.955 -15.294 21.980 hybrid contribution 0.408 0.535 -0.616 0.912 sum -4.648 15.490 -15.910 22.686 Atomic orbital electron populations 1.21872 0.93817 1.03118 1.01006 1.19795 0.94887 0.92756 0.86822 0.94087 1.20474 1.05474 0.91531 0.93822 1.22232 1.10869 0.95027 0.92119 1.45483 1.49699 1.09981 1.10281 1.21958 1.01782 1.04040 0.78925 1.25283 1.05635 0.92319 0.87543 1.70516 1.13873 1.14243 1.16460 1.61713 1.06223 1.54532 1.00553 1.22495 1.00598 0.95959 0.93630 1.22058 0.87494 0.95595 1.00821 1.22223 0.96690 0.86377 0.95602 1.88062 1.81529 1.12440 1.46437 1.20141 0.93519 0.87197 0.87342 1.21107 1.37154 0.89828 1.05788 0.91383 1.24936 0.95474 0.99424 0.94883 1.69978 1.41951 1.30605 1.11914 0.86376 0.78959 0.83371 0.78014 1.20688 1.21302 1.19598 0.92263 0.92756 0.91226 0.81601 0.90882 0.89615 0.90141 0.78095 0.91283 0.90876 0.96653 0.89975 0.95452 0.95009 0.94893 0.98404 0.98214 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.69 37.16 0.32 -1.43 16 2 C 0.17 2.41 2.52 -68.86 -0.17 2.24 16 3 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 4 C 0.02 0.27 4.85 -82.85 -0.40 -0.13 16 5 C -0.07 -0.84 11.49 -16.56 -0.19 -1.03 16 6 N -0.47 -5.23 3.15 -126.00 -0.40 -5.62 16 7 C 0.08 0.46 11.18 59.85 0.67 1.13 16 8 C 0.17 2.48 12.56 -90.37 -1.14 1.34 16 9 N -0.43 -7.94 10.35 -10.87 -0.11 -8.06 16 10 N -0.51 -8.79 4.43 -236.28 -1.05 -9.84 16 11 C 0.02 0.31 8.70 60.07 0.52 0.84 16 12 C 0.07 1.22 5.13 -3.83 -0.02 1.20 16 13 C 0.07 1.46 6.01 37.16 0.22 1.68 16 14 O -0.37 -9.79 10.27 -35.23 -0.36 -10.16 16 15 C 0.19 5.70 5.69 36.01 0.20 5.91 16 16 C -0.50 -15.70 9.43 -34.44 -0.32 -16.03 16 17 H 0.07 2.16 7.81 -52.49 -0.41 1.75 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -28.37 13.29 55.43 0.74 -27.63 16 20 Si 0.91 23.00 29.54 -169.99 -5.02 17.98 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 24 H 0.06 0.65 6.45 -51.93 -0.33 0.32 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 27 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.20 2.31 8.06 -52.49 -0.42 1.89 16 32 H 0.07 0.96 6.58 -51.93 -0.34 0.62 16 33 H 0.07 1.18 6.01 -51.93 -0.31 0.87 16 34 H 0.02 0.19 8.12 -51.93 -0.42 -0.23 16 35 H 0.08 1.61 6.45 -51.93 -0.33 1.27 16 36 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.03 0.67 6.17 -51.93 -0.32 0.35 16 39 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 40 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 337.48 15.07 5.09 5.09 Total: -1.00 -37.30 337.48 -8.20 -45.50 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -6.68 Total: -4.48 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -0.40 Total: -2.78 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.82 Total: -51.15 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.36 Total: -10.16 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -37.30 -8.20 -45.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710141143.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.295 kcal (2) G-P(sol) polarization free energy of solvation -37.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds