Wall clock time and date at job start Mon Mar 30 2020 04:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46855 * 2 1 4 4 C 1.50703 * 109.47240 * 239.99563 * 2 1 3 5 5 C 1.34670 * 125.98579 * 85.75537 * 4 2 1 6 6 N 1.36877 * 106.81517 * 179.73253 * 5 4 2 7 7 C 1.46503 * 126.39600 * 179.97438 * 6 5 4 8 8 C 1.35045 * 107.20699 * 0.02562 * 6 5 4 9 9 N 1.30498 * 108.69881 * 359.97438 * 8 6 5 10 10 N 1.46904 * 109.46831 * 119.99986 * 2 1 3 11 11 C 1.46903 * 110.99785 * 307.55123 * 10 2 1 12 12 C 1.46895 * 110.99735 * 183.60238 * 10 2 1 13 13 C 1.52996 * 109.47044 * 189.99607 * 12 10 2 14 14 O 1.42899 * 109.47198 * 65.00015 * 13 12 10 15 15 C 1.42900 * 114.00346 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47157 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00119 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99761 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99852 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99794 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46812 * 90.00538 * 20 18 16 22 22 H 1.48502 * 109.47416 * 210.00547 * 20 18 16 23 23 H 1.48499 * 109.47544 * 330.00882 * 20 18 16 24 24 H 1.08995 * 109.47682 * 300.00363 * 1 2 3 25 25 H 1.08999 * 109.47258 * 60.00463 * 1 2 3 26 26 H 1.09010 * 109.47281 * 179.97438 * 1 2 3 27 27 H 1.07994 * 126.59309 * 359.76089 * 5 4 2 28 28 H 1.09003 * 109.47124 * 90.00610 * 7 6 5 29 29 H 1.09000 * 109.46816 * 210.00171 * 7 6 5 30 30 H 1.08998 * 109.46939 * 330.00512 * 7 6 5 31 31 H 1.07997 * 125.64962 * 179.97438 * 8 6 5 32 32 H 1.09007 * 109.46465 * 65.87494 * 11 10 2 33 33 H 1.08997 * 109.46827 * 185.86974 * 11 10 2 34 34 H 1.08998 * 109.47764 * 305.87650 * 11 10 2 35 35 H 1.08999 * 109.47184 * 310.00041 * 12 10 2 36 36 H 1.09004 * 109.47286 * 69.99553 * 12 10 2 37 37 H 1.08999 * 109.47175 * 184.99995 * 13 12 10 38 38 H 1.09005 * 109.47557 * 304.99886 * 13 12 10 39 39 H 1.08996 * 109.47422 * 300.00364 * 15 14 13 40 40 H 1.09003 * 109.46755 * 60.00446 * 15 14 13 41 41 H 0.97003 * 119.99907 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.2201 -0.1559 -2.4432 6 7 2.6882 -1.1467 -3.2635 7 6 3.0349 -1.0108 -4.6804 8 6 2.7697 -2.2731 -2.5230 9 7 2.3761 -2.0046 -1.3082 10 7 2.0196 -0.6925 1.1995 11 6 1.4070 -0.1383 2.4142 12 6 3.4855 -0.6379 1.2773 13 6 3.9723 -1.5704 2.3884 14 8 3.6620 -2.9225 2.0456 15 6 4.0770 -3.8796 3.0221 16 6 3.7009 -5.2639 2.5602 17 1 3.1958 -5.3993 1.6152 18 6 4.0025 -6.3578 3.3435 19 7 4.6180 -6.1929 4.4940 20 14 3.5357 -8.0735 2.7714 21 1 4.6486 -8.6494 1.9744 22 1 3.2748 -8.9353 3.9523 23 1 2.3126 -8.0000 1.9324 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 2.0370 0.8728 -2.7160 28 1 4.0856 -0.7359 -4.7726 29 1 2.8613 -1.9589 -5.1894 30 1 2.4157 -0.2365 -5.1332 31 1 3.1051 -3.2365 -2.8776 32 1 0.3372 -0.3474 2.4093 33 1 1.8626 -0.5961 3.2922 34 1 1.5664 0.9396 2.4424 35 1 3.9119 -0.9536 0.3252 36 1 3.8001 0.3826 1.4956 37 1 5.0507 -1.4636 2.5058 38 1 3.4774 -1.3100 3.3241 39 1 5.1576 -3.8207 3.1523 40 1 3.5846 -3.6674 3.9711 41 1 4.8299 -6.9624 5.0453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710141143.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:27 Heat of formation + Delta-G solvation = 6.882514 kcal Electronic energy + Delta-G solvation = -20744.038923 eV Core-core repulsion = 17659.926443 eV Total energy + Delta-G solvation = -3084.112480 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.86378 -39.35298 -37.87197 -34.97761 -34.67039 -32.88556 -30.59477 -29.45884 -28.69983 -27.71100 -26.74065 -24.42762 -23.44029 -22.24147 -21.79961 -20.33452 -18.56607 -17.96214 -17.41991 -17.13317 -16.51643 -16.31706 -16.03107 -15.66947 -15.51362 -14.77404 -14.68116 -14.50472 -14.26375 -13.72760 -13.59402 -13.52755 -13.36156 -13.03831 -12.83633 -12.79247 -12.73938 -12.52451 -12.27983 -12.12653 -11.97877 -11.58779 -11.18028 -10.80519 -10.49916 -10.28692 -10.08448 -9.18182 -8.94138 -8.28079 -6.39008 1.23220 1.39185 1.43277 1.56003 2.10287 2.36720 2.38341 3.02926 3.04914 3.33282 3.77073 4.04566 4.17519 4.19016 4.24019 4.30392 4.41112 4.46876 4.50100 4.52503 4.56214 4.66562 4.74000 4.75675 4.80105 4.87460 4.96178 5.01810 5.09675 5.14634 5.23840 5.39856 5.46164 5.60602 5.90062 6.03609 6.26433 6.40177 6.49032 6.63954 6.95424 7.33388 7.47395 8.84785 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.017058 B = 0.005019 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.063130 B = 5577.803777 C = 6573.754869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.166 3.834 3 H 0.065 0.935 4 C -0.019 4.019 5 C -0.051 4.051 6 N -0.461 5.461 7 C 0.069 3.931 8 C 0.157 3.843 9 N -0.503 5.503 10 N -0.540 5.540 11 C 0.024 3.976 12 C 0.084 3.916 13 C 0.060 3.940 14 O -0.383 6.383 15 C 0.209 3.791 16 C -0.539 4.539 17 H 0.055 0.945 18 C 0.006 3.994 19 N -0.933 5.933 20 Si 0.983 3.017 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.268 1.268 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.204 0.796 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.214 0.786 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.037 0.963 38 H 0.039 0.961 39 H -0.021 1.021 40 H -0.021 1.021 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.419 17.140 -17.566 25.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.057 3.943 3 H 0.082 0.918 4 C -0.149 4.149 5 C -0.185 4.185 6 N -0.144 5.144 7 C -0.072 4.072 8 C -0.126 4.126 9 N -0.221 5.221 10 N -0.265 5.265 11 C -0.124 4.124 12 C -0.044 4.044 13 C -0.018 4.018 14 O -0.302 6.302 15 C 0.134 3.866 16 C -0.576 4.576 17 H 0.074 0.926 18 C -0.192 4.192 19 N -0.573 5.573 20 Si 0.806 3.194 21 H -0.191 1.191 22 H -0.196 1.196 23 H -0.193 1.193 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.055 0.945 27 H 0.221 0.779 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.231 0.769 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.057 0.943 39 H -0.003 1.003 40 H -0.003 1.003 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.575 15.958 -17.151 24.081 hybrid contribution 0.594 0.330 -0.081 0.684 sum -4.981 16.288 -17.232 24.229 Atomic orbital electron populations 1.21810 0.92776 1.01471 1.02846 1.19935 0.95674 0.93354 0.85325 0.91781 1.20774 1.07504 0.91146 0.95499 1.22732 1.08446 0.96297 0.91018 1.45711 1.48061 1.08761 1.11881 1.22314 1.02966 1.05810 0.76091 1.25449 1.05999 0.93758 0.87375 1.70384 1.16109 1.16535 1.19023 1.61605 1.05697 1.56744 1.02433 1.22460 1.00507 0.97407 0.91986 1.21829 0.88442 0.95908 0.98253 1.22574 0.97373 0.84213 0.97602 1.88033 1.81648 1.14695 1.45854 1.19762 0.91900 0.87895 0.87032 1.21338 1.38855 0.91371 1.06063 0.92639 1.25952 0.94516 1.04118 0.94614 1.70081 1.41857 1.32554 1.12827 0.85189 0.78998 0.77123 0.78106 1.19067 1.19631 1.19251 0.90877 0.90382 0.94514 0.77883 0.89726 0.88210 0.87791 0.76928 0.90701 0.93014 0.93735 0.91869 0.92220 0.94475 0.94276 1.00327 1.00331 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.69 71.98 0.63 -2.49 16 2 C 0.17 4.58 2.52 44.17 0.11 4.69 16 3 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.02 -0.58 4.85 41.39 0.20 -0.38 16 5 C -0.05 -1.10 11.49 83.09 0.95 -0.14 16 6 N -0.46 -9.43 3.15 -552.54 -1.74 -11.18 16 7 C 0.07 0.63 11.18 127.77 1.43 2.06 16 8 C 0.16 4.48 12.56 180.26 2.26 6.75 16 9 N -0.50 -18.87 10.35 -188.32 -1.95 -20.82 16 10 N -0.54 -18.72 4.43 -901.46 -3.99 -22.71 16 11 C 0.02 0.70 8.70 127.69 1.11 1.81 16 12 C 0.08 3.01 5.13 86.30 0.44 3.45 16 13 C 0.06 2.60 6.01 71.98 0.43 3.03 16 14 O -0.38 -21.51 10.27 -148.98 -1.53 -23.04 16 15 C 0.21 13.01 5.69 71.24 0.41 13.42 16 16 C -0.54 -34.97 9.43 25.60 0.24 -34.73 16 17 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 18 C 0.01 0.35 5.46 84.66 0.46 0.81 16 19 N -0.93 -59.23 13.29 21.45 0.28 -58.95 16 20 Si 0.98 47.37 29.54 68.60 2.03 49.39 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 24 H 0.07 1.48 6.45 -2.39 -0.02 1.46 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.20 2.68 8.06 -2.91 -0.02 2.65 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.49 16 31 H 0.21 5.06 8.06 -2.91 -0.02 5.03 16 32 H 0.07 2.04 6.58 -2.38 -0.02 2.03 16 33 H 0.05 1.69 6.01 -2.39 -0.01 1.68 16 34 H 0.04 1.02 8.12 -2.39 -0.02 1.00 16 35 H 0.06 2.52 6.45 -2.39 -0.02 2.51 16 36 H 0.06 1.73 8.12 -2.39 -0.02 1.71 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.04 1.64 6.17 -2.38 -0.01 1.63 16 39 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 40 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 41 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -84.06 337.48 2.77 -81.29 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.99 Total: 7.74 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 8.68 Total: -1.72 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -7.40 Total: -113.66 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -1.53 Total: -23.04 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.39 kcal Total: -84.06 2.77 -81.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710141143.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.177 kcal (2) G-P(sol) polarization free energy of solvation -84.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds