Wall clock time and date at job start Mon Mar 30 2020 04:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.47516 * 2 1 4 4 C 1.50707 * 109.46654 * 119.99979 * 2 1 3 5 5 C 1.34670 * 125.98667 * 274.71084 * 4 2 1 6 6 N 1.36882 * 106.81901 * 179.84992 * 5 4 2 7 7 C 1.46496 * 126.39755 * 180.11991 * 6 5 4 8 8 C 1.35043 * 107.20056 * 0.41694 * 6 5 4 9 9 N 1.30497 * 108.70451 * 359.73910 * 8 6 5 10 10 N 1.46902 * 109.47407 * 239.99296 * 2 1 3 11 11 C 1.46898 * 111.00283 * 183.95482 * 10 2 1 12 12 C 1.46906 * 110.99573 * 60.00340 * 10 2 1 13 13 C 1.52997 * 109.46848 * 189.99875 * 12 10 2 14 14 O 1.42904 * 109.47309 * 65.00308 * 13 12 10 15 15 C 1.42895 * 114.00145 * 179.97438 * 14 13 12 16 16 C 1.50709 * 109.46882 * 179.97438 * 15 14 13 17 17 H 1.07991 * 119.99907 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99672 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00199 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99967 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47315 * 60.00025 * 20 18 16 22 22 H 1.48497 * 109.47614 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47377 * 299.99975 * 20 18 16 24 24 H 1.09001 * 109.46892 * 60.00647 * 1 2 3 25 25 H 1.09003 * 109.47841 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47719 * 300.00655 * 1 2 3 27 27 H 1.08007 * 126.59095 * 359.96516 * 5 4 2 28 28 H 1.08997 * 109.47467 * 270.31930 * 7 6 5 29 29 H 1.08992 * 109.47176 * 30.32610 * 7 6 5 30 30 H 1.09011 * 109.46704 * 150.32493 * 7 6 5 31 31 H 1.07997 * 125.64819 * 179.72138 * 8 6 5 32 32 H 1.08997 * 109.47334 * 296.05250 * 11 10 2 33 33 H 1.09000 * 109.46674 * 56.05127 * 11 10 2 34 34 H 1.08995 * 109.47296 * 176.04950 * 11 10 2 35 35 H 1.08998 * 109.47121 * 309.99709 * 12 10 2 36 36 H 1.09000 * 109.47141 * 69.99907 * 12 10 2 37 37 H 1.09001 * 109.46957 * 184.99642 * 13 12 10 38 38 H 1.08994 * 109.47537 * 305.00287 * 13 12 10 39 39 H 1.08996 * 109.47381 * 299.99878 * 15 14 13 40 40 H 1.09003 * 109.47275 * 60.00159 * 15 14 13 41 41 H 0.97005 * 120.00041 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0322 -0.7105 1.2306 5 6 2.2115 -0.1579 2.4455 6 7 2.6740 -1.1500 3.2675 7 6 3.0090 -1.0168 4.6874 8 6 2.7700 -2.2728 2.5233 9 7 2.3845 -2.0024 1.3062 10 7 2.0197 -0.6926 -1.1993 11 6 3.4851 -0.7947 -1.1869 12 6 1.5487 -0.0265 -2.4211 13 6 1.8628 -0.9046 -3.6340 14 8 1.1118 -2.1175 -3.5513 15 6 1.3327 -3.0135 -4.6424 16 6 0.4957 -4.2523 -4.4525 17 1 -0.1415 -4.3457 -3.5856 18 6 0.5434 -5.2662 -5.3856 19 7 1.3198 -5.1525 -6.4410 20 14 -0.4946 -6.8013 -5.1507 21 1 -1.9304 -6.4254 -5.1026 22 1 -0.2640 -7.7330 -6.2838 23 1 -0.1141 -7.4663 -3.8786 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 2.0245 0.8700 2.7193 28 1 4.0571 -0.7355 4.7886 29 1 2.3813 -0.2483 5.1382 30 1 2.8377 -1.9679 5.1918 31 1 3.1098 -3.2350 2.8768 32 1 3.9192 0.2042 -1.2299 33 1 3.8068 -1.2917 -0.2717 34 1 3.8164 -1.3723 -2.0498 35 1 0.4723 0.1322 -2.3564 36 1 2.0519 0.9344 -2.5280 37 1 1.5944 -0.3727 -4.5468 38 1 2.9276 -1.1368 -3.6485 39 1 1.0531 -2.5252 -5.5759 40 1 2.3866 -3.2895 -4.6782 41 1 1.3532 -5.8657 -7.0977 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710141145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:31 Heat of formation + Delta-G solvation = 32.835051 kcal Electronic energy + Delta-G solvation = -20464.141788 eV Core-core repulsion = 17381.154695 eV Total energy + Delta-G solvation = -3082.987094 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.08654 -38.00228 -36.06373 -33.98662 -32.58203 -31.60545 -29.06068 -28.92569 -27.11825 -26.51775 -24.77732 -23.06243 -22.09850 -21.28443 -20.46448 -19.34917 -17.10938 -16.21827 -15.97733 -15.70868 -15.40757 -14.82101 -14.66983 -14.19829 -14.00442 -13.79475 -13.51962 -13.31702 -13.01665 -12.85079 -12.77019 -12.02889 -11.87077 -11.68535 -11.50306 -11.15818 -11.10101 -10.80112 -10.69618 -10.52102 -10.15918 -9.84857 -9.65264 -9.45769 -8.91542 -8.61017 -8.36621 -7.94522 -7.74047 -5.95275 -3.95064 2.00501 2.70615 3.22595 3.43821 3.45069 3.50546 4.20919 4.42496 4.49828 4.62332 4.77944 4.81460 5.02311 5.03930 5.12716 5.35673 5.41067 5.47712 5.61574 5.67697 5.72913 5.89494 5.93380 6.04259 6.07124 6.16693 6.20315 6.28131 6.45384 6.55813 6.57511 6.71377 7.14876 7.29437 7.53167 7.58489 7.63017 7.97661 8.25015 8.35307 8.82595 9.20913 9.69128 11.16612 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.021497 B = 0.004078 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.170903 B = 6865.081761 C = 7577.998313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.166 3.834 3 H 0.042 0.958 4 C 0.022 3.978 5 C -0.065 4.065 6 N -0.469 5.469 7 C 0.076 3.924 8 C 0.173 3.827 9 N -0.452 5.452 10 N -0.506 5.506 11 C 0.030 3.970 12 C 0.055 3.945 13 C 0.068 3.932 14 O -0.376 6.376 15 C 0.195 3.805 16 C -0.506 4.506 17 H 0.066 0.934 18 C 0.054 3.946 19 N -0.903 5.903 20 Si 0.907 3.093 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.275 1.275 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.169 0.831 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.203 0.797 32 H 0.008 0.992 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.034 0.966 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.000 1.000 40 H 0.002 0.998 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.257 13.335 21.208 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.056 3.944 3 H 0.059 0.941 4 C -0.108 4.108 5 C -0.198 4.198 6 N -0.153 5.153 7 C -0.067 4.067 8 C -0.109 4.109 9 N -0.169 5.169 10 N -0.230 5.230 11 C -0.118 4.118 12 C -0.072 4.072 13 C -0.010 4.010 14 O -0.296 6.296 15 C 0.120 3.880 16 C -0.544 4.544 17 H 0.085 0.915 18 C -0.146 4.146 19 N -0.543 5.543 20 Si 0.734 3.266 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.200 1.200 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.186 0.814 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.219 0.781 32 H 0.026 0.974 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.018 0.982 40 H 0.020 0.980 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.998 12.161 20.699 24.338 hybrid contribution 0.216 0.564 0.553 0.819 sum 4.214 12.725 21.252 25.126 Atomic orbital electron populations 1.21862 0.93495 1.03507 1.00922 1.19817 0.95318 0.92795 0.86425 0.94065 1.20495 1.04964 0.91230 0.94083 1.22288 1.10532 0.95120 0.91835 1.45429 1.49767 1.10003 1.10121 1.21976 1.01933 1.04188 0.78639 1.25202 1.05759 0.92520 0.87447 1.70398 1.14795 1.14640 1.17082 1.61721 1.10196 1.51103 0.99984 1.22397 0.87252 0.98502 1.03614 1.22261 1.01367 0.93804 0.89788 1.22227 0.95463 0.88322 0.94966 1.87967 1.65639 1.27609 1.48356 1.20141 0.95902 0.87820 0.84109 1.21056 1.24965 1.00616 1.07780 0.91543 1.24937 0.96008 0.98709 0.94978 1.69966 1.39042 1.33814 1.11453 0.86415 0.80538 0.82065 0.77559 1.20106 1.21333 1.20022 0.91989 0.90971 0.92901 0.81359 0.90830 0.89969 0.89560 0.78073 0.97398 0.90707 0.91223 0.89756 0.94846 0.94632 0.94664 0.98195 0.98033 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.97 37.15 0.33 -1.59 16 2 C 0.17 2.41 2.53 -68.86 -0.17 2.23 16 3 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 4 C 0.02 0.32 4.93 -82.85 -0.41 -0.09 16 5 C -0.07 -0.72 11.49 -16.56 -0.19 -0.91 16 6 N -0.47 -4.50 3.15 -126.00 -0.40 -4.90 16 7 C 0.08 0.35 11.18 59.84 0.67 1.02 16 8 C 0.17 2.07 12.56 -90.38 -1.14 0.93 16 9 N -0.45 -7.35 9.60 -10.87 -0.10 -7.46 16 10 N -0.51 -8.89 4.46 -236.29 -1.05 -9.95 16 11 C 0.03 0.51 8.98 60.06 0.54 1.05 16 12 C 0.06 0.93 5.16 -3.82 -0.02 0.91 16 13 C 0.07 1.40 5.99 37.16 0.22 1.62 16 14 O -0.38 -9.92 10.27 -35.23 -0.36 -10.28 16 15 C 0.19 5.72 5.69 36.01 0.20 5.93 16 16 C -0.51 -15.83 9.43 -34.44 -0.32 -16.16 16 17 H 0.07 2.08 7.81 -52.49 -0.41 1.67 16 18 C 0.05 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -28.26 13.29 55.43 0.74 -27.52 16 20 Si 0.91 22.98 29.54 -169.99 -5.02 17.96 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 24 H 0.06 0.81 6.20 -51.93 -0.32 0.48 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.17 1.34 8.06 -52.48 -0.42 0.91 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.27 8.14 -51.92 -0.42 -0.15 16 31 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.07 1.28 5.83 -51.93 -0.30 0.98 16 34 H 0.07 1.25 6.37 -51.93 -0.33 0.92 16 35 H 0.08 1.40 5.83 -51.93 -0.30 1.09 16 36 H 0.03 0.48 8.12 -51.93 -0.42 0.05 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.04 0.72 6.33 -51.93 -0.33 0.39 16 39 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 40 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -37.09 336.35 -8.14 -45.23 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -6.63 Total: -4.66 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -0.38 Total: -3.50 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.82 Total: -49.82 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.36 Total: -10.28 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.09 -8.14 -45.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710141145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.070 kcal (2) G-P(sol) polarization free energy of solvation -37.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds