Wall clock time and date at job start Mon Mar 30 2020 04:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.47516 * 2 1 4 4 C 1.50707 * 109.46654 * 119.99979 * 2 1 3 5 5 C 1.34670 * 125.98667 * 274.71084 * 4 2 1 6 6 N 1.36882 * 106.81901 * 179.84992 * 5 4 2 7 7 C 1.46496 * 126.39755 * 180.11991 * 6 5 4 8 8 C 1.35043 * 107.20056 * 0.41694 * 6 5 4 9 9 N 1.30497 * 108.70451 * 359.73910 * 8 6 5 10 10 N 1.46902 * 109.47407 * 239.99296 * 2 1 3 11 11 C 1.46898 * 111.00283 * 183.95482 * 10 2 1 12 12 C 1.46906 * 110.99573 * 60.00340 * 10 2 1 13 13 C 1.52997 * 109.46848 * 189.99875 * 12 10 2 14 14 O 1.42904 * 109.47309 * 65.00308 * 13 12 10 15 15 C 1.42895 * 114.00145 * 179.97438 * 14 13 12 16 16 C 1.50709 * 109.46882 * 179.97438 * 15 14 13 17 17 H 1.07991 * 119.99907 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99672 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00199 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99967 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47315 * 60.00025 * 20 18 16 22 22 H 1.48497 * 109.47614 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47377 * 299.99975 * 20 18 16 24 24 H 1.09001 * 109.46892 * 60.00647 * 1 2 3 25 25 H 1.09003 * 109.47841 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47719 * 300.00655 * 1 2 3 27 27 H 1.08007 * 126.59095 * 359.96516 * 5 4 2 28 28 H 1.08997 * 109.47467 * 270.31930 * 7 6 5 29 29 H 1.08992 * 109.47176 * 30.32610 * 7 6 5 30 30 H 1.09011 * 109.46704 * 150.32493 * 7 6 5 31 31 H 1.07997 * 125.64819 * 179.72138 * 8 6 5 32 32 H 1.08997 * 109.47334 * 296.05250 * 11 10 2 33 33 H 1.09000 * 109.46674 * 56.05127 * 11 10 2 34 34 H 1.08995 * 109.47296 * 176.04950 * 11 10 2 35 35 H 1.08998 * 109.47121 * 309.99709 * 12 10 2 36 36 H 1.09000 * 109.47141 * 69.99907 * 12 10 2 37 37 H 1.09001 * 109.46957 * 184.99642 * 13 12 10 38 38 H 1.08994 * 109.47537 * 305.00287 * 13 12 10 39 39 H 1.08996 * 109.47381 * 299.99878 * 15 14 13 40 40 H 1.09003 * 109.47275 * 60.00159 * 15 14 13 41 41 H 0.97005 * 120.00041 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0322 -0.7105 1.2306 5 6 2.2115 -0.1579 2.4455 6 7 2.6740 -1.1500 3.2675 7 6 3.0090 -1.0168 4.6874 8 6 2.7700 -2.2728 2.5233 9 7 2.3845 -2.0024 1.3062 10 7 2.0197 -0.6926 -1.1993 11 6 3.4851 -0.7947 -1.1869 12 6 1.5487 -0.0265 -2.4211 13 6 1.8628 -0.9046 -3.6340 14 8 1.1118 -2.1175 -3.5513 15 6 1.3327 -3.0135 -4.6424 16 6 0.4957 -4.2523 -4.4525 17 1 -0.1415 -4.3457 -3.5856 18 6 0.5434 -5.2662 -5.3856 19 7 1.3198 -5.1525 -6.4410 20 14 -0.4946 -6.8013 -5.1507 21 1 -1.9304 -6.4254 -5.1026 22 1 -0.2640 -7.7330 -6.2838 23 1 -0.1141 -7.4663 -3.8786 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 2.0245 0.8700 2.7193 28 1 4.0571 -0.7355 4.7886 29 1 2.3813 -0.2483 5.1382 30 1 2.8377 -1.9679 5.1918 31 1 3.1098 -3.2350 2.8768 32 1 3.9192 0.2042 -1.2299 33 1 3.8068 -1.2917 -0.2717 34 1 3.8164 -1.3723 -2.0498 35 1 0.4723 0.1322 -2.3564 36 1 2.0519 0.9344 -2.5280 37 1 1.5944 -0.3727 -4.5468 38 1 2.9276 -1.1368 -3.6485 39 1 1.0531 -2.5252 -5.5759 40 1 2.3866 -3.2895 -4.6782 41 1 1.3532 -5.8657 -7.0977 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710141145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:31 Heat of formation + Delta-G solvation = 7.247401 kcal Electronic energy + Delta-G solvation = -20465.251352 eV Core-core repulsion = 17381.154695 eV Total energy + Delta-G solvation = -3084.096658 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.93101 -39.39630 -37.88287 -35.02218 -34.67077 -32.80101 -30.64258 -29.84459 -28.88293 -27.54385 -26.12169 -24.51890 -24.11332 -22.20756 -21.66670 -20.37919 -18.59942 -17.85450 -17.44630 -17.20309 -16.48767 -16.41481 -16.03496 -15.81148 -15.35534 -14.97111 -14.64636 -14.52499 -14.39929 -13.73733 -13.58860 -13.47297 -13.36033 -13.12080 -12.99472 -12.75240 -12.67449 -12.52374 -12.34617 -12.18747 -11.88543 -11.61573 -11.22273 -10.81847 -10.61184 -10.31712 -10.12841 -9.23832 -8.96483 -8.29494 -6.41286 1.19932 1.39178 1.45472 1.53604 2.06884 2.27574 2.37257 3.01557 3.03497 3.30755 3.70037 4.03062 4.14310 4.17938 4.19233 4.34052 4.35883 4.46819 4.49973 4.52740 4.59213 4.68768 4.71349 4.76057 4.78514 4.84895 4.91043 4.98736 5.12488 5.15691 5.22764 5.39531 5.42994 5.57847 5.83393 6.00724 6.27406 6.34360 6.46741 6.60883 6.90959 7.30854 7.37787 8.82996 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.021497 B = 0.004078 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.170903 B = 6865.081761 C = 7577.998313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.166 3.834 3 H 0.066 0.934 4 C -0.017 4.017 5 C -0.047 4.047 6 N -0.462 5.462 7 C 0.069 3.931 8 C 0.165 3.835 9 N -0.516 5.516 10 N -0.539 5.539 11 C 0.042 3.958 12 C 0.064 3.936 13 C 0.058 3.942 14 O -0.394 6.394 15 C 0.211 3.789 16 C -0.546 4.546 17 H 0.057 0.943 18 C 0.006 3.994 19 N -0.932 5.932 20 Si 0.984 3.016 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.268 1.268 24 H 0.065 0.935 25 H 0.032 0.968 26 H 0.080 0.920 27 H 0.203 0.797 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.224 0.776 32 H 0.031 0.969 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.032 0.968 39 H -0.015 1.015 40 H -0.023 1.023 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.857 14.167 23.304 27.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.058 3.942 3 H 0.084 0.916 4 C -0.146 4.146 5 C -0.182 4.182 6 N -0.144 5.144 7 C -0.072 4.072 8 C -0.118 4.118 9 N -0.235 5.235 10 N -0.264 5.264 11 C -0.106 4.106 12 C -0.063 4.063 13 C -0.019 4.019 14 O -0.314 6.314 15 C 0.136 3.864 16 C -0.583 4.583 17 H 0.075 0.925 18 C -0.192 4.192 19 N -0.572 5.572 20 Si 0.806 3.194 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.193 1.193 24 H 0.084 0.916 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.220 0.780 28 H 0.106 0.894 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.241 0.759 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.002 0.998 40 H -0.005 1.005 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.614 13.023 22.831 26.532 hybrid contribution 0.412 0.377 -0.027 0.559 sum 4.027 13.400 22.805 26.755 Atomic orbital electron populations 1.21811 0.93458 1.01326 1.02464 1.19899 0.95320 0.93690 0.85331 0.91637 1.20617 1.07406 0.91226 0.95333 1.22709 1.08306 0.96380 0.90779 1.45683 1.48168 1.08862 1.11702 1.22329 1.03167 1.05897 0.75796 1.25557 1.05311 0.94005 0.86939 1.70274 1.17055 1.16367 1.19791 1.61616 1.10580 1.52940 1.01287 1.22210 0.87309 0.99210 1.01915 1.22176 1.01933 0.94042 0.88152 1.22600 0.94796 0.86734 0.97795 1.87926 1.66817 1.29420 1.47206 1.19752 0.94057 0.88182 0.84410 1.21349 1.26225 1.02340 1.08405 0.92487 1.25972 0.97001 1.02177 0.94099 1.70073 1.39811 1.35228 1.12047 0.85234 0.78812 0.77220 0.78122 1.18848 1.19583 1.19330 0.91599 0.94870 0.90126 0.78039 0.89449 0.88112 0.87970 0.75927 0.95068 0.91528 0.93837 0.89559 0.91256 0.93393 0.94935 0.99754 1.00507 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 8.97 71.98 0.65 -2.91 16 2 C 0.17 4.66 2.53 44.17 0.11 4.77 16 3 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 4 C -0.02 -0.47 4.93 41.39 0.20 -0.26 16 5 C -0.05 -0.93 11.49 83.09 0.95 0.03 16 6 N -0.46 -7.80 3.15 -552.54 -1.74 -9.54 16 7 C 0.07 0.41 11.18 127.77 1.43 1.84 16 8 C 0.16 3.83 12.56 180.26 2.26 6.10 16 9 N -0.52 -17.06 9.60 -188.31 -1.81 -18.87 16 10 N -0.54 -19.06 4.46 -901.49 -4.02 -23.08 16 11 C 0.04 1.41 8.98 127.69 1.15 2.55 16 12 C 0.06 2.14 5.16 86.30 0.45 2.58 16 13 C 0.06 2.44 5.99 71.98 0.43 2.87 16 14 O -0.39 -21.67 10.27 -148.98 -1.53 -23.20 16 15 C 0.21 13.00 5.69 71.24 0.41 13.41 16 16 C -0.55 -35.25 9.43 25.60 0.24 -35.01 16 17 H 0.06 3.69 7.81 -2.92 -0.02 3.67 16 18 C 0.01 0.34 5.46 84.65 0.46 0.80 16 19 N -0.93 -59.06 13.29 21.45 0.28 -58.78 16 20 Si 0.98 47.25 29.54 68.60 2.03 49.27 16 21 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 24 H 0.07 1.66 6.20 -2.39 -0.01 1.64 16 25 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 28 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.22 3.69 8.06 -2.91 -0.02 3.67 16 32 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 2.35 5.83 -2.39 -0.01 2.33 16 34 H 0.04 1.64 6.37 -2.39 -0.02 1.62 16 35 H 0.09 2.82 5.83 -2.39 -0.01 2.80 16 36 H 0.07 1.81 8.12 -2.39 -0.02 1.79 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.03 1.37 6.33 -2.39 -0.02 1.36 16 39 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 41 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 Total: -1.00 -83.58 336.35 2.95 -80.63 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 0.99 Total: 6.79 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 8.74 Total: -3.23 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -7.29 Total: -110.27 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -1.53 Total: -23.20 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -83.58 2.95 -80.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710141145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.881 kcal (2) G-P(sol) polarization free energy of solvation -83.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds