Wall clock time and date at job start Mon Mar 30 2020 04:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99923 * 2 1 4 4 C 1.50696 * 109.46906 * 269.99818 * 3 2 1 5 5 H 1.07998 * 120.00431 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99724 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00233 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 119.99828 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47208 * 90.00372 * 8 6 4 10 10 H 1.48505 * 109.47336 * 209.99880 * 8 6 4 11 11 H 1.48497 * 109.47573 * 329.99884 * 8 6 4 12 12 C 1.34781 * 120.00265 * 179.97438 * 2 1 3 13 13 O 1.21276 * 120.00119 * 180.02562 * 12 2 1 14 14 C 1.50704 * 119.99512 * 0.02562 * 12 2 1 15 15 N 1.46908 * 109.46572 * 179.97438 * 14 12 2 16 16 C 1.49071 * 110.96427 * 283.93530 * 15 14 12 17 17 H 1.08996 * 113.14810 * 46.18438 * 16 15 14 18 18 C 1.57377 * 103.60951 * 283.47804 * 16 15 14 19 19 C 1.54326 * 104.55806 * 334.49636 * 18 16 15 20 20 C 1.48864 * 110.99548 * 170.00084 * 15 14 12 21 21 H 1.08998 * 112.44603 * 313.49178 * 20 15 14 22 22 C 1.53774 * 106.93518 * 189.75731 * 20 15 14 23 23 N 1.46960 * 108.96652 * 296.39376 * 22 20 15 24 24 C 1.46957 * 111.65664 * 55.33580 * 23 22 20 25 25 H 1.09001 * 109.47316 * 270.00013 * 1 2 3 26 26 H 1.08990 * 109.47110 * 30.00221 * 1 2 3 27 27 H 1.09005 * 109.46831 * 150.00189 * 1 2 3 28 28 H 1.08997 * 109.46976 * 29.99747 * 3 2 1 29 29 H 1.09001 * 109.47089 * 149.99692 * 3 2 1 30 30 H 0.96998 * 120.00338 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47517 * 59.99968 * 14 12 2 32 32 H 1.08994 * 109.47416 * 299.99365 * 14 12 2 33 33 H 1.08995 * 110.74822 * 215.59971 * 18 16 15 34 34 H 1.09002 * 110.18881 * 93.11323 * 18 16 15 35 35 H 1.09002 * 110.39215 * 240.86210 * 19 18 16 36 36 H 1.09002 * 110.48322 * 118.52967 * 19 18 16 37 37 H 1.08997 * 109.56054 * 176.54805 * 22 20 15 38 38 H 1.08999 * 109.55409 * 56.23652 * 22 20 15 39 39 H 1.00901 * 110.99797 * 179.77025 * 23 22 20 40 40 H 1.09002 * 109.55636 * 64.51183 * 24 23 22 41 41 H 1.08997 * 109.55447 * 184.71919 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5542 3.6176 -0.6732 8 14 3.4389 3.4162 -3.4339 9 1 2.3093 4.2595 -3.9010 10 1 4.6995 4.1987 -3.4962 11 1 3.5559 2.2190 -4.3045 12 6 2.1390 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 7 2.3401 -3.5889 0.0005 16 6 2.9415 -3.7764 -1.3505 17 1 3.2722 -2.8428 -1.8057 18 6 1.8007 -4.4882 -2.1682 19 6 0.9512 -5.2102 -1.1010 20 6 1.6465 -4.8837 0.2418 21 1 0.9424 -4.8303 1.0722 22 6 2.7391 -5.9415 0.4698 23 7 3.5357 -6.0775 -0.7577 24 6 4.0896 -4.7869 -1.1905 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3633 -0.8901 -0.5138 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1384 0.5139 30 1 4.0310 4.4434 -0.8504 31 1 0.7590 -2.5303 -0.8897 32 1 0.7585 -2.5299 0.8903 33 1 2.2206 -5.2084 -2.8703 34 1 1.1986 -3.7486 -2.6961 35 1 0.9532 -6.2858 -1.2780 36 1 -0.0694 -4.8277 -1.1030 37 1 2.2761 -6.8981 0.7120 38 1 3.3843 -5.6285 1.2906 39 1 4.2663 -6.7635 -0.6404 40 1 4.7943 -4.4231 -0.4428 41 1 4.6017 -4.9113 -2.1446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723850739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:17 Heat of formation + Delta-G solvation = -8.926329 kcal Electronic energy + Delta-G solvation = -21509.957957 eV Core-core repulsion = 18425.159953 eV Total energy + Delta-G solvation = -3084.798003 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.54898 -38.50631 -34.77539 -34.29868 -32.59005 -31.18448 -31.01716 -28.32531 -26.85920 -25.58108 -24.36293 -23.92109 -22.20189 -20.45707 -18.84627 -18.31889 -17.03408 -16.53187 -16.25148 -15.43070 -15.22496 -14.76519 -14.36017 -14.20749 -13.99246 -13.79027 -13.48005 -12.75421 -12.69647 -12.49410 -12.34311 -12.15037 -11.81218 -11.68884 -11.33396 -11.16988 -10.91583 -10.87490 -10.68020 -10.64311 -10.52029 -10.30117 -10.13143 -9.59931 -8.89182 -8.46692 -8.41797 -8.25713 -7.57464 -6.02201 -4.06957 3.30660 3.37281 3.40988 3.53492 3.70801 4.15397 4.30584 4.46900 4.74009 4.81089 4.95104 5.09392 5.24880 5.29014 5.34205 5.35607 5.43671 5.50620 5.60117 5.63775 5.72570 5.79375 5.90645 5.92336 5.96346 5.98562 6.09300 6.19514 6.22793 6.36587 6.82935 6.95919 7.04824 7.16822 7.35592 7.49087 7.59980 7.94790 8.26415 8.49128 8.93613 9.20022 9.58264 11.05806 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.026899 B = 0.005021 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.665069 B = 5575.699738 C = 5929.704318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.607 5.607 3 C 0.247 3.753 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.506 3.494 13 O -0.524 6.524 14 C 0.027 3.973 15 N -0.485 5.485 16 C 0.066 3.934 17 H 0.107 0.893 18 C -0.136 4.136 19 C -0.133 4.133 20 C 0.056 3.944 21 H 0.095 0.905 22 C 0.071 3.929 23 N -0.690 5.690 24 C 0.070 3.930 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.339 0.661 40 H 0.044 0.956 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.670 -18.163 0.827 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.341 5.341 3 C 0.127 3.873 4 C -0.563 4.563 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.291 3.709 13 O -0.400 6.400 14 C -0.105 4.105 15 N -0.207 5.207 16 C -0.043 4.043 17 H 0.125 0.875 18 C -0.176 4.176 19 C -0.172 4.172 20 C -0.053 4.053 21 H 0.113 0.887 22 C -0.059 4.059 23 N -0.321 5.321 24 C -0.059 4.059 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.058 0.942 39 H 0.157 0.843 40 H 0.062 0.938 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.042 -17.770 0.909 18.792 hybrid contribution 0.063 0.480 -0.928 1.046 sum -5.980 -17.290 -0.018 18.295 Atomic orbital electron populations 1.21611 0.81714 1.02380 1.00279 1.48163 1.06001 1.07811 1.72083 1.19254 0.92550 0.78079 0.97380 1.21429 1.36391 1.06202 0.92323 0.92601 1.24934 0.95388 0.96430 0.97362 1.69932 1.38457 1.14318 1.30700 0.86510 0.77675 0.78569 0.84733 1.20666 1.21080 1.19941 1.20136 0.88249 0.84622 0.77845 1.90656 1.13648 1.86886 1.48831 1.22140 0.94776 0.91345 1.02224 1.65448 1.26951 1.01051 1.27266 1.23776 0.94445 0.97997 0.88086 0.87517 1.23196 0.97070 0.98944 0.98368 1.22700 0.97871 1.01494 0.95135 1.23280 0.94711 0.89724 0.97577 0.88740 1.22021 0.95198 0.97654 0.91016 1.60320 1.28248 1.09760 1.33779 1.22024 0.95488 0.88311 1.00090 0.93848 0.90824 0.92765 0.95136 0.93870 0.92744 0.92013 0.88976 0.90498 0.92682 0.90599 0.92721 0.90740 0.94233 0.84345 0.93802 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.24 59.85 0.61 1.97 16 2 N -0.61 -13.15 2.86 -182.96 -0.52 -13.67 16 3 C 0.25 6.58 5.16 -5.19 -0.03 6.55 16 4 C -0.52 -15.05 9.39 -34.44 -0.32 -15.38 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.51 10.81 7.37 -10.98 -0.08 10.72 16 13 O -0.52 -13.52 15.00 5.56 0.08 -13.44 16 14 C 0.03 0.42 3.68 -4.97 -0.02 0.40 16 15 N -0.48 -7.46 4.64 -212.04 -0.98 -8.44 16 16 C 0.07 1.00 3.41 -63.72 -0.22 0.78 16 17 H 0.11 1.97 7.16 -51.93 -0.37 1.59 16 18 C -0.14 -1.73 5.47 -23.65 -0.13 -1.86 16 19 C -0.13 -1.46 5.59 -25.14 -0.14 -1.60 16 20 C 0.06 0.66 3.69 -65.32 -0.24 0.42 16 21 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16 22 C 0.07 0.76 6.15 -3.39 -0.02 0.74 16 23 N -0.69 -7.49 5.82 -112.80 -0.66 -8.15 16 24 C 0.07 0.93 6.19 -3.39 -0.02 0.91 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 27 H 0.05 0.71 6.44 -51.93 -0.33 0.38 16 28 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.06 0.90 6.03 -51.93 -0.31 0.59 16 32 H 0.09 1.25 7.97 -51.93 -0.41 0.83 16 33 H 0.08 0.94 7.85 -51.93 -0.41 0.53 16 34 H 0.05 0.71 7.82 -51.93 -0.41 0.31 16 35 H 0.08 0.79 7.82 -51.93 -0.41 0.38 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.34 3.03 8.90 -39.29 -0.35 2.68 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 320.82 15.07 4.83 4.83 Total: -1.00 -33.28 320.82 -8.96 -42.24 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.72 Total: 0.46 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -0.70 Total: 5.33 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -1.43 Total: -56.44 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.28 -8.96 -42.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723850739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.310 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds