Wall clock time and date at job start Mon Mar 30 2020 04:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 120.00265 * 2 1 4 4 C 1.50697 * 109.47198 * 270.00814 * 3 2 1 5 5 H 1.07995 * 120.00104 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99605 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00130 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99933 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46976 * 359.97438 * 8 6 4 10 10 H 1.48489 * 109.47501 * 119.99754 * 8 6 4 11 11 H 1.48511 * 109.46942 * 240.00199 * 8 6 4 12 12 C 1.34777 * 120.00002 * 180.02562 * 2 1 3 13 13 O 1.21278 * 120.00212 * 179.97438 * 12 2 1 14 14 C 1.50697 * 119.99838 * 359.97438 * 12 2 1 15 15 N 1.46900 * 109.47114 * 180.02562 * 14 12 2 16 16 C 1.48175 * 111.00043 * 170.00097 * 15 14 12 17 17 C 1.52866 * 85.83970 * 223.11626 * 16 15 14 18 18 C 1.48165 * 110.99850 * 70.41988 * 15 14 12 19 19 C 1.53610 * 115.53557 * 265.99469 * 17 16 15 20 20 C 1.55170 * 102.62780 * 208.60569 * 19 17 16 21 21 N 1.48623 * 103.37958 * 36.55194 * 20 19 17 22 22 C 1.48199 * 105.88104 * 321.37971 * 21 20 19 23 23 H 1.09002 * 109.46768 * 269.99544 * 1 2 3 24 24 H 1.09003 * 109.46866 * 29.98739 * 1 2 3 25 25 H 1.08988 * 109.47492 * 149.99505 * 1 2 3 26 26 H 1.09007 * 109.46431 * 30.00519 * 3 2 1 27 27 H 1.08997 * 109.46930 * 149.99961 * 3 2 1 28 28 H 0.96997 * 119.99776 * 180.02562 * 7 6 4 29 29 H 1.09006 * 109.47394 * 60.00679 * 14 12 2 30 30 H 1.09002 * 109.47220 * 300.00805 * 14 12 2 31 31 H 1.08999 * 113.80987 * 108.88306 * 16 15 14 32 32 H 1.08997 * 113.80881 * 337.34720 * 16 15 14 33 33 H 1.08996 * 113.81797 * 22.64801 * 18 15 14 34 34 H 1.09004 * 113.92070 * 251.12812 * 18 15 14 35 35 H 1.08995 * 110.78258 * 326.89337 * 19 17 16 36 36 H 1.09008 * 110.77763 * 90.32501 * 19 17 16 37 37 H 1.08997 * 110.64085 * 278.07402 * 20 19 17 38 38 H 1.08999 * 110.63610 * 155.02470 * 20 19 17 39 39 H 1.00896 * 110.99977 * 81.93554 * 21 20 19 40 40 H 1.08999 * 110.02813 * 265.83575 * 22 21 20 41 41 H 1.08996 * 110.02333 * 144.41596 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0960 -2.2416 6 6 3.1260 2.8781 -1.6726 7 7 3.5525 3.6186 -0.6729 8 14 3.4378 3.4172 -3.4338 9 1 2.8617 2.4162 -4.3672 10 1 2.7998 4.7375 -3.6677 11 1 4.9005 3.5260 -3.6665 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 7 2.3400 -3.5888 -0.0005 16 6 1.6495 -4.8777 0.2397 17 6 2.8125 -5.1982 1.1787 18 6 3.0373 -3.6912 1.3027 19 6 3.9699 -5.9907 0.5527 20 6 4.5445 -6.7678 1.7666 21 7 3.3351 -7.1097 2.5599 22 6 2.4455 -5.9276 2.4727 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3633 0.8901 -0.5137 25 1 -0.3634 -0.8898 -0.5138 26 1 1.6085 2.0283 0.5140 27 1 3.1500 1.1383 0.5138 28 1 4.0287 4.4448 -0.8502 29 1 0.7584 -2.5299 -0.8904 30 1 0.7589 -2.5301 0.8896 31 1 1.6023 -5.5219 -0.6383 32 1 0.6900 -4.7751 0.7465 33 1 2.4952 -3.2318 2.1293 34 1 4.0867 -3.3983 1.2667 35 1 3.6008 -6.6790 -0.2075 36 1 4.7185 -5.3171 0.1353 37 1 5.2170 -6.1344 2.3450 38 1 5.0559 -7.6721 1.4367 39 1 2.8812 -7.9318 2.1910 40 1 2.6089 -5.2735 3.3292 41 1 1.4037 -6.2462 2.4392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724103001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:50 Heat of formation + Delta-G solvation = -14.586411 kcal Electronic energy + Delta-G solvation = -20781.972801 eV Core-core repulsion = 17696.929358 eV Total energy + Delta-G solvation = -3085.043443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.94144 -40.29550 -37.61340 -36.51238 -34.76227 -32.11797 -30.19049 -29.81439 -27.78168 -27.24946 -27.09124 -24.87350 -22.95626 -22.71025 -20.02884 -19.50436 -18.72761 -17.98240 -17.50677 -17.30019 -16.76200 -16.61048 -16.04781 -15.54636 -15.24092 -14.95438 -14.51286 -14.40961 -13.95371 -13.82007 -13.77703 -13.47337 -13.25217 -13.15324 -12.95182 -12.83500 -12.61911 -12.54042 -12.23555 -12.21254 -11.91396 -11.70173 -11.45428 -11.32231 -10.67575 -10.56417 -9.85864 -9.47442 -9.40561 -8.25020 -6.40157 1.33897 1.36827 1.48645 1.83448 2.25661 2.39774 2.91802 3.04191 3.27968 3.39042 3.51549 3.72237 4.06033 4.14847 4.23819 4.24130 4.37529 4.38908 4.46361 4.51650 4.57914 4.69654 4.69904 4.79597 4.87279 4.92693 4.98550 5.01796 5.02833 5.18924 5.19753 5.26697 5.34283 5.53753 5.74238 5.81276 5.99597 6.03912 6.51597 6.68097 6.78757 7.26354 7.50175 8.82175 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.033315 B = 0.003914 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.251884 B = 7152.510402 C = 7448.939136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.614 5.614 3 C 0.261 3.739 4 C -0.543 4.543 5 H 0.051 0.949 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.268 1.268 10 H -0.266 1.266 11 H -0.282 1.282 12 C 0.493 3.507 13 O -0.584 6.584 14 C 0.018 3.982 15 N -0.489 5.489 16 C 0.025 3.975 17 C -0.108 4.108 18 C 0.027 3.973 19 C -0.127 4.127 20 C 0.045 3.955 21 N -0.681 5.681 22 C 0.059 3.941 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.023 0.977 27 H -0.006 1.006 28 H 0.267 0.733 29 H 0.120 0.880 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.348 0.652 40 H 0.069 0.931 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.913 -21.244 4.119 23.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.347 5.347 3 C 0.139 3.861 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.192 1.192 10 H -0.191 1.191 11 H -0.208 1.208 12 C 0.281 3.719 13 O -0.464 6.464 14 C -0.113 4.113 15 N -0.212 5.212 16 C -0.103 4.103 17 C -0.110 4.110 18 C -0.102 4.102 19 C -0.166 4.166 20 C -0.084 4.084 21 N -0.308 5.308 22 C -0.071 4.071 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.041 0.959 27 H 0.012 0.988 28 H 0.076 0.924 29 H 0.138 0.862 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.164 0.836 40 H 0.087 0.913 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.584 -20.830 4.251 22.572 hybrid contribution -0.169 1.180 -1.008 1.561 sum -7.753 -19.650 3.243 21.372 Atomic orbital electron populations 1.21931 0.77829 1.04024 1.02561 1.48220 1.08448 1.06323 1.71683 1.18713 0.90966 0.80438 0.95944 1.21733 1.36865 1.06488 0.93053 0.93044 1.25889 0.94848 0.96416 1.02125 1.70058 1.38990 1.14800 1.33013 0.85342 0.77892 0.78439 0.78965 1.19204 1.19131 1.20768 1.21253 0.88006 0.86363 0.76283 1.90635 1.16493 1.87878 1.51394 1.22587 0.95081 0.88732 1.04868 1.68476 1.19450 1.01378 1.31898 1.24065 0.96307 0.90598 0.99312 1.22820 0.96854 0.94171 0.97165 1.23690 1.00038 0.95505 0.90977 1.22732 0.96527 0.98655 0.98663 1.23142 0.93608 0.99874 0.91795 1.62735 1.07011 1.05704 1.55352 1.22630 0.97661 0.92023 0.94818 0.91074 0.91590 0.88809 0.95860 0.98761 0.92365 0.86211 0.88769 0.88202 0.88535 0.91364 0.92571 0.89704 0.92419 0.91610 0.88965 0.83571 0.91284 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.32 10.24 127.77 1.31 3.63 16 2 N -0.61 -26.69 2.86 -851.13 -2.43 -29.12 16 3 C 0.26 14.53 5.16 85.63 0.44 14.97 16 4 C -0.54 -32.28 9.39 25.60 0.24 -32.04 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.36 5.46 84.66 0.46 0.82 16 7 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 8 Si 0.97 46.00 29.54 68.60 2.03 48.02 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 12 C 0.49 21.17 7.48 87.66 0.66 21.82 16 13 O -0.58 -31.70 15.13 -3.02 -0.05 -31.75 16 14 C 0.02 0.52 3.86 85.56 0.33 0.85 16 15 N -0.49 -14.06 5.94 -929.23 -5.52 -19.59 16 16 C 0.03 0.45 7.17 86.01 0.62 1.07 16 17 C -0.11 -2.13 1.14 -52.01 -0.06 -2.19 16 18 C 0.03 0.77 5.86 86.02 0.50 1.27 16 19 C -0.13 -2.47 6.44 31.54 0.20 -2.26 16 20 C 0.05 0.77 7.56 86.71 0.66 1.42 16 21 N -0.68 -10.75 7.53 -502.59 -3.78 -14.53 16 22 C 0.06 0.95 7.08 86.06 0.61 1.55 16 23 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 25 H 0.09 2.04 6.44 -2.39 -0.02 2.03 16 26 H 0.02 1.31 8.07 -2.38 -0.02 1.29 16 27 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 28 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 29 H 0.12 2.89 7.40 -2.38 -0.02 2.88 16 30 H 0.09 2.04 7.67 -2.39 -0.02 2.02 16 31 H 0.10 1.61 8.04 -2.39 -0.02 1.59 16 32 H 0.10 1.26 7.76 -2.39 -0.02 1.24 16 33 H 0.07 1.86 7.77 -2.39 -0.02 1.85 16 34 H 0.06 2.01 7.97 -2.39 -0.02 1.99 16 35 H 0.08 1.39 8.04 -2.39 -0.02 1.37 16 36 H 0.06 1.43 7.88 -2.38 -0.02 1.42 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.35 4.01 8.92 -89.70 -0.80 3.21 16 40 H 0.07 1.28 7.94 -2.39 -0.02 1.26 16 41 H 0.09 1.06 7.91 -2.39 -0.02 1.04 16 Total: -1.00 -78.50 330.29 -3.29 -81.79 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.21 Total: 11.35 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 5.97 Total: 10.93 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -11.45 Total: -120.34 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.05 Total: -31.75 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -78.50 -3.29 -81.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724103001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.201 kcal (2) G-P(sol) polarization free energy of solvation -78.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds