Wall clock time and date at job start Mon Mar 30 2020 05:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48504 * 109.46673 * 239.99915 * 3 2 1 5 5 H 1.48499 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47453 * 119.99423 * 3 2 1 7 7 C 1.37868 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00264 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00142 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47450 * 175.37105 * 9 7 2 11 11 C 1.46955 * 111.00345 * 295.41244 * 10 9 7 12 12 C 1.53045 * 109.36741 * 183.18971 * 11 10 9 13 13 N 1.46966 * 109.35983 * 301.59191 * 12 11 10 14 14 C 1.46906 * 110.99641 * 183.18799 * 13 12 11 15 15 C 1.52997 * 109.46995 * 75.76168 * 14 13 12 16 16 H 1.08999 * 110.01402 * 305.85542 * 15 14 13 17 17 C 1.53873 * 110.03353 * 67.29457 * 15 14 13 18 18 C 1.54274 * 106.59691 * 119.28508 * 17 15 14 19 19 C 1.54893 * 104.19270 * 23.61329 * 18 17 15 20 20 H 1.08992 * 110.91719 * 80.44466 * 19 18 17 21 21 N 1.46904 * 110.75285 * 203.74536 * 19 18 17 22 22 C 1.54266 * 110.03108 * 184.46635 * 15 14 13 23 23 C 1.46954 * 110.87728 * 59.32671 * 13 12 11 24 24 C 1.46961 * 110.99599 * 59.20945 * 10 9 7 25 25 H 0.97007 * 120.00077 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47205 * 55.37211 * 9 7 2 27 27 H 1.09002 * 109.47349 * 295.37461 * 9 7 2 28 28 H 1.08998 * 109.49028 * 63.21206 * 11 10 9 29 29 H 1.09001 * 109.50023 * 303.16308 * 11 10 9 30 30 H 1.09002 * 109.49066 * 181.63394 * 12 11 10 31 31 H 1.08999 * 109.50936 * 61.56878 * 12 11 10 32 32 H 1.08996 * 109.47278 * 315.75865 * 14 13 12 33 33 H 1.09004 * 109.46716 * 195.75989 * 14 13 12 34 34 H 1.08994 * 110.03854 * 238.56544 * 17 15 14 35 35 H 1.08996 * 110.03602 * 0.02562 * 17 15 14 36 36 H 1.08995 * 110.48579 * 264.93559 * 18 17 15 37 37 H 1.09000 * 110.48426 * 142.28991 * 18 17 15 38 38 H 1.00907 * 110.99646 * 293.32764 * 21 19 18 39 39 H 1.00897 * 111.00248 * 57.28024 * 21 19 18 40 40 H 1.08997 * 110.48655 * 98.42489 * 22 15 14 41 41 H 1.08999 * 110.59910 * 335.83669 * 22 15 14 42 42 H 1.08993 * 109.49418 * 60.64332 * 23 13 12 43 43 H 1.09004 * 109.48773 * 180.70988 * 23 13 12 44 44 H 1.08998 * 109.48835 * 296.77530 * 24 10 9 45 45 H 1.08995 * 109.49178 * 56.84909 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2017 -3.6134 -0.1097 11 6 2.9023 -3.5810 -1.4010 12 6 3.8222 -4.7992 -1.5101 13 7 4.7791 -4.7886 -0.3947 14 6 5.7297 -5.9031 -0.5060 15 6 6.7619 -5.5865 -1.5901 16 1 6.2578 -5.3414 -2.5249 17 6 7.6501 -4.4114 -1.1452 18 6 9.0964 -4.9461 -1.0963 19 6 9.0862 -6.1577 -2.0613 20 1 9.1693 -5.8304 -3.0976 21 7 10.1635 -7.0988 -1.7266 22 6 7.6993 -6.7943 -1.7961 23 6 4.0784 -4.8212 0.8967 24 6 3.1584 -3.6029 1.0058 25 1 -0.4850 0.8401 -0.0004 26 1 0.5633 -2.5224 -0.8437 27 1 0.6883 -2.5930 0.9305 28 1 3.4961 -2.6695 -1.4698 29 1 2.1734 -3.6020 -2.2112 30 1 4.3647 -4.7619 -2.4548 31 1 3.2257 -5.7106 -1.4689 32 1 5.1926 -6.8138 -0.7706 33 1 6.2370 -6.0447 0.4484 34 1 7.5779 -3.5956 -1.8643 35 1 7.3462 -4.0669 -0.1568 36 1 9.3511 -5.2654 -0.0858 37 1 9.7959 -4.1865 -1.4451 38 1 11.0689 -6.6876 -1.8980 39 1 10.0845 -7.4140 -0.7714 40 1 7.3793 -7.3833 -2.6555 41 1 7.7290 -7.4139 -0.8998 42 1 3.4846 -5.7326 0.9654 43 1 4.8076 -4.7999 1.7067 44 1 3.7552 -2.6917 0.9644 45 1 2.6161 -3.6402 1.9505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903475725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:32 Heat of formation + Delta-G solvation = -6.126063 kcal Electronic energy + Delta-G solvation = -21208.963913 eV Core-core repulsion = 18260.120433 eV Total energy + Delta-G solvation = -2948.843480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.35201 -38.10101 -35.22508 -33.03821 -32.13725 -30.32028 -29.56045 -28.10889 -26.55678 -24.94379 -23.07356 -22.90309 -21.45411 -20.58929 -19.48026 -18.99927 -16.64332 -16.36463 -15.79988 -15.36395 -15.15758 -14.55972 -14.37208 -14.14071 -13.95072 -13.56908 -13.45957 -13.03235 -12.61465 -12.37796 -12.09462 -11.83621 -11.80192 -11.43998 -11.15920 -11.01719 -10.98335 -10.85669 -10.73298 -10.57905 -10.50005 -10.33792 -10.19294 -9.97704 -9.80970 -9.48137 -8.91153 -8.41138 -8.00459 -7.13865 -6.00561 -4.09574 3.30250 3.34884 3.37789 4.01332 4.37528 4.42528 4.51862 4.58278 4.88305 5.06937 5.08394 5.29594 5.31480 5.34261 5.39272 5.49283 5.55816 5.59716 5.63761 5.70237 5.76632 5.82654 5.95515 5.97054 6.01860 6.05521 6.10884 6.19707 6.32183 6.35762 6.45465 6.65107 6.80987 6.87352 6.90349 7.15320 7.24985 7.39235 7.45429 7.54378 7.92307 8.08781 8.30187 8.33834 9.01152 9.57255 11.04463 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.004067 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.757800 B = 6882.693738 C = 7492.148342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.187 3.813 10 N -0.544 5.544 11 C 0.065 3.935 12 C 0.060 3.940 13 N -0.535 5.535 14 C 0.063 3.937 15 C -0.085 4.085 16 H 0.073 0.927 17 C -0.105 4.105 18 C -0.161 4.161 19 C 0.085 3.915 20 H 0.086 0.914 21 N -0.845 5.845 22 C -0.110 4.110 23 C 0.060 3.940 24 C 0.064 3.936 25 H 0.262 0.738 26 H 0.033 0.967 27 H 0.027 0.973 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.339 0.661 39 H 0.339 0.661 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.032 0.968 43 H 0.066 0.934 44 H 0.048 0.952 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.233 -12.496 -2.026 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.062 3.938 10 N -0.269 5.269 11 C -0.064 4.064 12 C -0.069 4.069 13 N -0.260 5.260 14 C -0.065 4.065 15 C -0.105 4.105 16 H 0.091 0.909 17 C -0.143 4.143 18 C -0.201 4.201 19 C -0.027 4.027 20 H 0.104 0.896 21 N -0.372 5.372 22 C -0.149 4.149 23 C -0.068 4.068 24 C -0.065 4.065 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.735 -12.852 -2.597 20.482 hybrid contribution 0.670 1.844 0.746 2.099 sum 16.405 -11.008 -1.851 19.842 Atomic orbital electron populations 1.69938 1.06028 1.26893 1.50280 1.24961 0.94747 0.99126 0.94957 0.86704 0.79668 0.83287 0.78648 1.20268 1.21251 1.20266 1.21747 0.93427 0.92047 1.51512 0.92327 1.19720 0.90852 0.85540 0.97705 1.62682 1.16654 1.46633 1.00895 1.21902 0.95425 0.95957 0.93082 1.22245 0.92862 0.98378 0.93370 1.62091 1.17782 1.43146 1.02937 1.22165 0.93888 0.91877 0.98553 1.21724 0.95293 0.94609 0.98828 0.90855 1.21963 0.92455 0.97312 1.02555 1.23227 0.98322 0.98893 0.99641 1.22477 0.91300 0.90131 0.98777 0.89601 1.58843 1.05766 1.42596 1.30025 1.22384 0.93634 0.97145 1.01713 1.22227 0.95706 0.98467 0.90431 1.21924 0.93473 0.95945 0.95115 0.92798 0.94919 0.95478 0.93464 0.91560 0.91371 0.94952 0.95095 0.91445 0.91986 0.90883 0.92076 0.92120 0.84856 0.84825 0.91474 0.91548 0.94968 0.91531 0.93347 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.55 -15.19 7.67 -34.44 -0.26 -15.45 16 8 H 0.06 1.62 5.81 -52.48 -0.31 1.32 16 9 C 0.19 4.89 5.14 -4.98 -0.03 4.86 16 10 N -0.54 -11.90 4.92 -235.91 -1.16 -13.06 16 11 C 0.07 1.30 5.32 -3.77 -0.02 1.28 16 12 C 0.06 0.96 5.43 -3.76 -0.02 0.94 16 13 N -0.53 -8.13 4.38 -234.46 -1.03 -9.16 16 14 C 0.06 0.77 4.02 -3.82 -0.02 0.76 16 15 C -0.09 -0.92 3.00 -89.50 -0.27 -1.19 16 16 H 0.07 0.86 6.75 -51.93 -0.35 0.51 16 17 C -0.10 -1.16 6.29 -25.61 -0.16 -1.32 16 18 C -0.16 -1.46 6.49 -25.07 -0.16 -1.62 16 19 C 0.08 0.74 4.05 -65.71 -0.27 0.47 16 20 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 21 N -0.84 -6.54 9.38 -2.98 -0.03 -6.57 16 22 C -0.11 -1.03 6.02 -25.07 -0.15 -1.18 16 23 C 0.06 0.96 5.57 -3.77 -0.02 0.93 16 24 C 0.06 1.27 5.24 -3.76 -0.02 1.26 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 26 H 0.03 0.92 8.12 -51.93 -0.42 0.49 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 1.05 6.95 -51.93 -0.36 0.68 16 29 H 0.07 1.32 8.12 -51.93 -0.42 0.89 16 30 H 0.07 0.98 6.72 -51.93 -0.35 0.64 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.03 0.38 8.00 -51.93 -0.42 -0.04 16 33 H 0.07 0.78 7.84 -51.93 -0.41 0.37 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.92 7.60 -51.93 -0.39 0.53 16 36 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.34 2.16 9.08 -39.29 -0.36 1.80 16 39 H 0.34 2.34 8.91 -39.29 -0.35 1.99 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.61 7.80 -51.93 -0.40 0.21 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 44 H 0.05 1.07 6.45 -51.93 -0.34 0.73 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -29.04 340.21 -11.09 -40.13 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.23 Total: 1.18 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.49 Total: -8.55 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -1.48 Total: -54.49 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.04 -11.09 -40.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903475725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.007 kcal (2) G-P(sol) polarization free energy of solvation -29.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds