Wall clock time and date at job start Mon Mar 30 2020 05:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48504 * 109.46673 * 239.99915 * 3 2 1 5 5 H 1.48499 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47453 * 119.99423 * 3 2 1 7 7 C 1.37868 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00264 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00142 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47450 * 175.37105 * 9 7 2 11 11 C 1.46955 * 111.00345 * 295.41244 * 10 9 7 12 12 C 1.53045 * 109.36741 * 183.18971 * 11 10 9 13 13 N 1.46966 * 109.35983 * 301.59191 * 12 11 10 14 14 C 1.46906 * 110.99641 * 183.18799 * 13 12 11 15 15 C 1.52997 * 109.46995 * 75.76168 * 14 13 12 16 16 H 1.08999 * 110.01402 * 305.85542 * 15 14 13 17 17 C 1.53873 * 110.03353 * 67.29457 * 15 14 13 18 18 C 1.54274 * 106.59691 * 119.28508 * 17 15 14 19 19 C 1.54893 * 104.19270 * 23.61329 * 18 17 15 20 20 H 1.08992 * 110.91719 * 80.44466 * 19 18 17 21 21 N 1.46904 * 110.75285 * 203.74536 * 19 18 17 22 22 C 1.54266 * 110.03108 * 184.46635 * 15 14 13 23 23 C 1.46954 * 110.87728 * 59.32671 * 13 12 11 24 24 C 1.46961 * 110.99599 * 59.20945 * 10 9 7 25 25 H 0.97007 * 120.00077 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47205 * 55.37211 * 9 7 2 27 27 H 1.09002 * 109.47349 * 295.37461 * 9 7 2 28 28 H 1.08998 * 109.49028 * 63.21206 * 11 10 9 29 29 H 1.09001 * 109.50023 * 303.16308 * 11 10 9 30 30 H 1.09002 * 109.49066 * 181.63394 * 12 11 10 31 31 H 1.08999 * 109.50936 * 61.56878 * 12 11 10 32 32 H 1.08996 * 109.47278 * 315.75865 * 14 13 12 33 33 H 1.09004 * 109.46716 * 195.75989 * 14 13 12 34 34 H 1.08994 * 110.03854 * 238.56544 * 17 15 14 35 35 H 1.08996 * 110.03602 * 0.02562 * 17 15 14 36 36 H 1.08995 * 110.48579 * 264.93559 * 18 17 15 37 37 H 1.09000 * 110.48426 * 142.28991 * 18 17 15 38 38 H 1.00907 * 110.99646 * 293.32764 * 21 19 18 39 39 H 1.00897 * 111.00248 * 57.28024 * 21 19 18 40 40 H 1.08997 * 110.48655 * 98.42489 * 22 15 14 41 41 H 1.08999 * 110.59910 * 335.83669 * 22 15 14 42 42 H 1.08993 * 109.49418 * 60.64332 * 23 13 12 43 43 H 1.09004 * 109.48773 * 180.70988 * 23 13 12 44 44 H 1.08998 * 109.48835 * 296.77530 * 24 10 9 45 45 H 1.08995 * 109.49178 * 56.84909 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2017 -3.6134 -0.1097 11 6 2.9023 -3.5810 -1.4010 12 6 3.8222 -4.7992 -1.5101 13 7 4.7791 -4.7886 -0.3947 14 6 5.7297 -5.9031 -0.5060 15 6 6.7619 -5.5865 -1.5901 16 1 6.2578 -5.3414 -2.5249 17 6 7.6501 -4.4114 -1.1452 18 6 9.0964 -4.9461 -1.0963 19 6 9.0862 -6.1577 -2.0613 20 1 9.1693 -5.8304 -3.0976 21 7 10.1635 -7.0988 -1.7266 22 6 7.6993 -6.7943 -1.7961 23 6 4.0784 -4.8212 0.8967 24 6 3.1584 -3.6029 1.0058 25 1 -0.4850 0.8401 -0.0004 26 1 0.5633 -2.5224 -0.8437 27 1 0.6883 -2.5930 0.9305 28 1 3.4961 -2.6695 -1.4698 29 1 2.1734 -3.6020 -2.2112 30 1 4.3647 -4.7619 -2.4548 31 1 3.2257 -5.7106 -1.4689 32 1 5.1926 -6.8138 -0.7706 33 1 6.2370 -6.0447 0.4484 34 1 7.5779 -3.5956 -1.8643 35 1 7.3462 -4.0669 -0.1568 36 1 9.3511 -5.2654 -0.0858 37 1 9.7959 -4.1865 -1.4451 38 1 11.0689 -6.6876 -1.8980 39 1 10.0845 -7.4140 -0.7714 40 1 7.3793 -7.3833 -2.6555 41 1 7.7290 -7.4139 -0.8998 42 1 3.4846 -5.7326 0.9654 43 1 4.8076 -4.7999 1.7067 44 1 3.7552 -2.6917 0.9644 45 1 2.6161 -3.6402 1.9505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903475725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:32 Heat of formation + Delta-G solvation = -27.420322 kcal Electronic energy + Delta-G solvation = -21209.887301 eV Core-core repulsion = 18260.120433 eV Total energy + Delta-G solvation = -2949.766868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.49173 -39.26742 -36.69253 -34.61419 -33.50989 -31.78440 -30.64847 -29.39153 -27.88736 -26.46430 -24.50501 -24.27551 -23.10726 -21.32374 -20.69259 -20.28012 -18.46178 -17.36787 -17.18062 -16.54091 -16.23177 -16.05515 -15.82157 -15.51411 -15.39915 -14.89900 -14.75853 -14.20430 -13.88007 -13.59157 -13.48112 -13.25028 -13.07351 -12.83577 -12.80290 -12.46282 -12.22142 -12.13498 -12.09112 -11.91064 -11.81397 -11.78247 -11.63259 -11.46815 -11.26681 -11.09011 -10.61820 -9.52620 -9.24078 -9.01033 -8.16615 -6.36403 1.35703 1.37250 1.45636 2.36327 2.93512 3.07927 3.38036 3.60678 3.75485 3.76418 4.06350 4.13265 4.20222 4.26741 4.42937 4.47345 4.51650 4.57189 4.59743 4.65953 4.70694 4.73806 4.82150 4.85375 4.89733 4.95969 5.09115 5.09493 5.14997 5.23450 5.23960 5.26115 5.32169 5.38036 5.46091 5.57858 5.72237 6.02538 6.13534 6.15783 6.29409 6.32850 6.52073 6.64707 6.84306 7.35103 8.85752 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.004067 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.757800 B = 6882.693738 C = 7492.148342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.556 4.556 8 H 0.055 0.945 9 C 0.201 3.799 10 N -0.544 5.544 11 C 0.067 3.933 12 C 0.072 3.928 13 N -0.545 5.545 14 C 0.068 3.932 15 C -0.081 4.081 16 H 0.065 0.935 17 C -0.105 4.105 18 C -0.153 4.153 19 C 0.090 3.910 20 H 0.082 0.918 21 N -0.848 5.848 22 C -0.104 4.104 23 C 0.071 3.929 24 C 0.066 3.934 25 H 0.266 0.734 26 H 0.006 0.994 27 H 0.003 0.997 28 H 0.021 0.979 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.348 0.652 39 H 0.345 0.655 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.090 0.910 44 H 0.023 0.977 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.554 -13.434 -2.058 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.187 4.187 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.595 4.595 8 H 0.074 0.926 9 C 0.074 3.926 10 N -0.268 5.268 11 C -0.062 4.062 12 C -0.056 4.056 13 N -0.270 5.270 14 C -0.060 4.060 15 C -0.100 4.100 16 H 0.083 0.917 17 C -0.143 4.143 18 C -0.192 4.192 19 C -0.022 4.022 20 H 0.100 0.900 21 N -0.377 5.377 22 C -0.142 4.142 23 C -0.057 4.057 24 C -0.063 4.063 25 H 0.074 0.926 26 H 0.024 0.976 27 H 0.021 0.979 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.109 0.891 44 H 0.042 0.958 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.084 -13.814 -2.628 22.908 hybrid contribution -0.059 2.104 0.758 2.237 sum 18.025 -11.710 -1.870 21.576 Atomic orbital electron populations 1.70059 1.07570 1.27970 1.51079 1.25815 0.95610 1.02844 0.94475 0.85620 0.78427 0.78788 0.78938 1.19613 1.20520 1.19481 1.21941 0.93335 0.92946 1.51282 0.92639 1.19376 0.91219 0.86842 0.95154 1.62623 1.17247 1.44313 1.02628 1.21914 0.95468 0.96973 0.91799 1.22087 0.92558 0.96177 0.94780 1.62069 1.17681 1.45140 1.02125 1.22211 0.93297 0.90811 0.99654 1.21669 0.95162 0.95244 0.97920 0.91668 1.21922 0.94037 0.97159 1.01188 1.23168 0.96857 0.99059 1.00164 1.22374 0.91371 0.89992 0.98460 0.89984 1.58822 1.05992 1.42269 1.30579 1.22321 0.93478 0.96407 1.02041 1.22100 0.95566 0.96280 0.91775 1.21949 0.93238 0.97030 0.94098 0.92558 0.97630 0.97928 0.96061 0.92178 0.89396 0.94468 0.94405 0.90293 0.93246 0.92437 0.91460 0.91811 0.83896 0.84128 0.91379 0.90921 0.94391 0.89144 0.95845 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.08 13.29 21.44 0.28 -55.79 16 2 C 0.01 0.68 5.46 84.65 0.46 1.14 16 3 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.56 -31.64 7.67 25.60 0.20 -31.44 16 8 H 0.06 3.15 5.81 -2.91 -0.02 3.13 16 9 C 0.20 10.92 5.14 85.56 0.44 11.36 16 10 N -0.54 -24.32 4.92 -900.29 -4.43 -28.74 16 11 C 0.07 2.71 5.32 86.31 0.46 3.17 16 12 C 0.07 2.22 5.43 86.31 0.47 2.69 16 13 N -0.55 -15.63 4.38 -895.69 -3.92 -19.55 16 14 C 0.07 1.46 4.02 86.30 0.35 1.81 16 15 C -0.08 -1.57 3.00 -10.07 -0.03 -1.60 16 16 H 0.06 1.40 6.75 -2.39 -0.02 1.38 16 17 C -0.10 -2.17 6.29 31.32 0.20 -1.97 16 18 C -0.15 -2.43 6.49 31.67 0.21 -2.22 16 19 C 0.09 1.35 4.05 46.21 0.19 1.54 16 20 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 21 N -0.85 -10.88 9.38 -163.33 -1.53 -12.41 16 22 C -0.10 -1.67 6.02 31.67 0.19 -1.48 16 23 C 0.07 2.15 5.57 86.31 0.48 2.63 16 24 C 0.07 2.61 5.24 86.31 0.45 3.07 16 25 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 26 H 0.01 0.33 8.12 -2.38 -0.02 0.31 16 27 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.02 0.96 6.95 -2.39 -0.02 0.94 16 29 H 0.06 2.45 8.12 -2.39 -0.02 2.43 16 30 H 0.09 2.38 6.72 -2.39 -0.02 2.37 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.04 0.80 8.00 -2.39 -0.02 0.78 16 33 H 0.08 1.56 7.84 -2.38 -0.02 1.54 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.37 7.60 -2.39 -0.02 1.35 16 36 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.35 3.54 9.08 -89.69 -0.81 2.72 16 39 H 0.35 3.77 8.91 -89.70 -0.80 2.97 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.10 7.80 -2.39 -0.02 1.08 16 42 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.09 2.34 8.00 -2.38 -0.02 2.32 16 44 H 0.02 1.05 6.45 -2.39 -0.02 1.03 16 45 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -63.06 340.21 -4.16 -67.23 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -0.65 Total: 13.85 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 4.06 Total: -11.31 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -9.60 Total: -116.50 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.06 -4.16 -67.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903475725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.807 kcal (2) G-P(sol) polarization free energy of solvation -63.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds