Wall clock time and date at job start Mon Mar 30 2020 04:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42895 * 114.00459 * 2 1 4 4 C 1.53000 * 109.47391 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.39009 * 126.77233 * 269.68486 * 5 4 3 7 7 C 1.41494 * 126.02266 * 0.02562 * 6 5 4 8 8 H 1.07997 * 119.99873 * 359.97438 * 7 6 5 9 9 C 1.39740 * 119.99944 * 179.97438 * 7 6 5 10 10 N 1.30981 * 119.99929 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99905 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 89.99765 * 11 9 7 13 13 H 1.48497 * 109.47011 * 209.99795 * 11 9 7 14 14 H 1.48497 * 109.47120 * 329.99539 * 11 9 7 15 15 N 1.34849 * 107.95785 * 179.83048 * 6 5 4 16 16 N 1.28676 * 109.62946 * 0.44532 * 15 6 5 17 17 N 1.35025 * 126.76756 * 90.00061 * 5 4 3 18 18 C 1.46493 * 126.49404 * 0.02562 * 17 5 4 19 19 H 1.09007 * 109.47265 * 0.02562 * 18 17 5 20 20 C 1.53002 * 109.46934 * 119.99897 * 18 17 5 21 21 C 1.52995 * 109.47704 * 240.00163 * 18 17 5 22 22 C 1.53002 * 109.47142 * 59.99861 * 21 18 17 23 23 C 1.52992 * 109.47863 * 180.02562 * 21 18 17 24 24 H 1.08999 * 109.47626 * 300.00874 * 1 2 3 25 25 H 1.09005 * 109.46741 * 60.00377 * 1 2 3 26 26 H 1.08998 * 109.47534 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47558 * 59.99233 * 3 2 1 28 28 H 1.09008 * 109.47043 * 299.99918 * 3 2 1 29 29 H 1.09000 * 109.46884 * 60.00145 * 4 3 2 30 30 H 1.09000 * 109.46955 * 299.99461 * 4 3 2 31 31 H 0.97007 * 120.00067 * 180.02562 * 10 9 7 32 32 H 1.09005 * 109.47041 * 179.97438 * 20 18 17 33 33 H 1.08999 * 109.47709 * 299.99927 * 20 18 17 34 34 H 1.08996 * 109.47219 * 60.00490 * 20 18 17 35 35 H 1.09007 * 109.46712 * 300.00274 * 21 18 17 36 36 H 1.08996 * 109.47219 * 60.00121 * 22 21 18 37 37 H 1.08991 * 109.47403 * 180.02562 * 22 21 18 38 38 H 1.09005 * 109.47041 * 300.00866 * 22 21 18 39 39 H 1.09002 * 109.47077 * 59.99804 * 23 21 18 40 40 H 1.08995 * 109.47630 * 179.97438 * 23 21 18 41 41 H 1.09007 * 109.47011 * 300.00438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1485 2.5613 0.0000 6 6 4.4930 3.3183 -1.1138 7 6 4.3296 2.9323 -2.4652 8 1 3.9025 1.9695 -2.7039 9 6 4.7208 3.7968 -3.4910 10 7 5.2384 4.9647 -3.2015 11 14 4.5058 3.2869 -5.2751 12 1 3.1696 3.7207 -5.7563 13 1 5.5610 3.9246 -6.1028 14 1 4.6159 1.8101 -5.3846 15 7 5.0064 4.4871 -0.6795 16 7 5.0134 4.5047 0.6071 17 7 4.4768 3.3003 1.0813 18 6 4.3052 2.9155 2.4843 19 1 3.8631 1.9205 2.5368 20 6 5.6676 2.9050 3.1806 21 6 3.3848 3.9203 3.1799 22 6 2.0224 3.9309 2.4837 23 6 3.2060 3.5189 4.6454 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.8574 0.6434 -0.8891 30 1 3.8567 0.6438 0.8909 31 1 5.5097 5.5650 -3.9135 32 1 5.5398 2.6191 4.2247 33 1 6.3234 2.1890 2.6852 34 1 6.1101 3.8997 3.1282 35 1 3.8273 4.9152 3.1275 36 1 1.5799 2.9361 2.5361 37 1 1.3668 4.6470 2.9789 38 1 2.1501 4.2171 1.4397 39 1 4.1767 3.5117 5.1412 40 1 2.5506 4.2350 5.1410 41 1 2.7637 2.5240 4.6982 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545000.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:23 Heat of formation + Delta-G solvation = 21.273878 kcal Electronic energy + Delta-G solvation = -21495.211473 eV Core-core repulsion = 18411.723049 eV Total energy + Delta-G solvation = -3083.488424 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15949 -37.53059 -36.90232 -33.35695 -32.74179 -31.43683 -29.22364 -28.45181 -26.90997 -26.18219 -24.72869 -23.56188 -22.57576 -21.07526 -19.39169 -18.81447 -16.91359 -16.16449 -15.79534 -15.31360 -14.93091 -14.79627 -14.51728 -14.22782 -13.60197 -13.30251 -12.95150 -12.84063 -12.45092 -12.32087 -12.04697 -11.95989 -11.62305 -11.55836 -11.18286 -11.14677 -10.94989 -10.86296 -10.72057 -10.67187 -10.59722 -10.40446 -10.16172 -9.66071 -9.32663 -9.24159 -8.83184 -8.37838 -7.38305 -6.35434 -4.14568 2.80926 3.17544 3.22173 3.25595 3.60209 4.12450 4.15577 4.36349 4.78086 5.02924 5.17957 5.37364 5.39098 5.45829 5.50306 5.54571 5.55820 5.62641 5.72207 5.73788 5.80007 5.84183 5.89891 5.96631 6.00690 6.02068 6.17684 6.19524 6.34974 6.41083 6.46277 6.53023 6.65027 6.94760 7.18861 7.45743 7.47516 7.54742 8.21499 8.45586 8.84749 9.10714 10.25081 10.61100 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.007301 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.852312 B = 3834.290539 C = 5122.850666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.063 3.937 4 C -0.008 4.008 5 C -0.120 4.120 6 C 0.159 3.841 7 C -0.450 4.450 8 H 0.081 0.919 9 C 0.074 3.926 10 N -0.775 5.775 11 Si 0.904 3.096 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.264 1.264 15 N -0.232 5.232 16 N -0.124 5.124 17 N -0.365 5.365 18 C 0.167 3.833 19 H 0.087 0.913 20 C -0.159 4.159 21 C -0.102 4.102 22 C -0.145 4.145 23 C -0.145 4.145 24 H 0.035 0.965 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.271 0.729 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.539 -6.207 10.213 13.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.014 4.014 4 C -0.048 4.048 5 C -0.251 4.251 6 C 0.029 3.971 7 C -0.486 4.486 8 H 0.099 0.901 9 C -0.145 4.145 10 N -0.401 5.401 11 Si 0.730 3.270 12 H -0.199 1.199 13 H -0.205 1.205 14 H -0.189 1.189 15 N -0.104 5.104 16 N -0.100 5.100 17 N -0.162 5.162 18 C 0.063 3.937 19 H 0.105 0.895 20 C -0.218 4.218 21 C -0.121 4.121 22 C -0.202 4.202 23 C -0.203 4.203 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.705 -4.774 10.519 12.883 hybrid contribution -0.790 -0.937 -1.055 1.617 sum -6.494 -5.712 9.464 12.820 Atomic orbital electron populations 1.22657 0.81893 1.01986 0.99775 1.87822 1.19022 1.29269 1.95460 1.22787 0.94645 0.83399 1.00555 1.19364 0.91229 0.91738 1.02453 1.21036 1.18546 0.97833 0.87670 1.18966 0.96797 0.88146 0.93209 1.18551 1.39553 1.02824 0.87662 0.90134 1.25770 0.93679 0.94452 1.00632 1.70019 1.29791 1.06574 1.33740 0.86386 0.78413 0.79664 0.82577 1.19869 1.20533 1.18854 1.75139 1.16360 1.19261 0.99613 1.81438 1.20070 1.01411 1.07053 1.49505 1.47536 1.14783 1.04366 1.21022 0.96135 0.97942 0.78619 0.89533 1.22160 0.96381 1.03433 0.99779 1.21420 0.96033 1.00157 0.94514 1.21838 0.95888 1.00975 1.01508 1.21882 1.01780 1.01309 0.95328 0.94645 0.94172 0.90183 0.93859 0.92420 0.89700 0.92599 0.91798 0.91415 0.92345 0.91328 0.89976 0.93103 0.92972 0.91925 0.92202 0.92519 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.40 -6.46 10.70 -35.23 -0.38 -6.84 16 3 C 0.06 1.10 5.92 37.16 0.22 1.32 16 4 C -0.01 -0.15 5.48 -27.88 -0.15 -0.31 16 5 C -0.12 -2.75 6.37 -80.90 -0.51 -3.27 16 6 C 0.16 4.33 6.72 -85.01 -0.57 3.75 16 7 C -0.45 -12.23 9.11 -37.78 -0.34 -12.58 16 8 H 0.08 2.06 7.29 -52.49 -0.38 1.67 16 9 C 0.07 1.97 5.49 -17.35 -0.10 1.87 16 10 N -0.78 -21.98 11.92 55.54 0.66 -21.32 16 11 Si 0.90 19.73 29.56 -169.99 -5.02 14.71 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 14 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 15 N -0.23 -6.66 10.56 32.05 0.34 -6.32 16 16 N -0.12 -3.15 13.62 60.35 0.82 -2.32 16 17 N -0.37 -7.80 2.52 -49.74 -0.13 -7.93 16 18 C 0.17 2.71 2.65 -67.94 -0.18 2.53 16 19 H 0.09 1.31 6.80 -51.92 -0.35 0.95 16 20 C -0.16 -2.30 9.11 37.16 0.34 -1.97 16 21 C -0.10 -1.46 2.64 -90.63 -0.24 -1.70 16 22 C -0.14 -2.16 8.53 37.16 0.32 -1.84 16 23 C -0.15 -1.56 8.84 37.15 0.33 -1.23 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.72 6.19 -51.93 -0.32 0.39 16 28 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 29 H 0.08 1.68 7.55 -51.93 -0.39 1.29 16 30 H 0.06 0.96 7.20 -51.93 -0.37 0.59 16 31 H 0.27 7.09 8.30 -40.82 -0.34 6.75 16 32 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.05 0.69 6.80 -51.93 -0.35 0.34 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 1.16 7.60 -51.93 -0.39 0.77 16 39 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 LS Contribution 334.07 15.07 5.03 5.03 Total: -1.00 -31.10 334.07 -5.05 -36.16 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.60 Total: 0.71 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 0.22 Total: -11.89 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 1.70 Total: -37.89 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.38 Total: -6.84 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.10 -5.05 -36.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545000.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.431 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds