Wall clock time and date at job start Mon Mar 30 2020 04:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42895 * 114.00459 * 2 1 4 4 C 1.53000 * 109.47391 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.39009 * 126.77233 * 269.68486 * 5 4 3 7 7 C 1.41494 * 126.02266 * 0.02562 * 6 5 4 8 8 H 1.07997 * 119.99873 * 359.97438 * 7 6 5 9 9 C 1.39740 * 119.99944 * 179.97438 * 7 6 5 10 10 N 1.30981 * 119.99929 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99905 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 89.99765 * 11 9 7 13 13 H 1.48497 * 109.47011 * 209.99795 * 11 9 7 14 14 H 1.48497 * 109.47120 * 329.99539 * 11 9 7 15 15 N 1.34849 * 107.95785 * 179.83048 * 6 5 4 16 16 N 1.28676 * 109.62946 * 0.44532 * 15 6 5 17 17 N 1.35025 * 126.76756 * 90.00061 * 5 4 3 18 18 C 1.46493 * 126.49404 * 0.02562 * 17 5 4 19 19 H 1.09007 * 109.47265 * 0.02562 * 18 17 5 20 20 C 1.53002 * 109.46934 * 119.99897 * 18 17 5 21 21 C 1.52995 * 109.47704 * 240.00163 * 18 17 5 22 22 C 1.53002 * 109.47142 * 59.99861 * 21 18 17 23 23 C 1.52992 * 109.47863 * 180.02562 * 21 18 17 24 24 H 1.08999 * 109.47626 * 300.00874 * 1 2 3 25 25 H 1.09005 * 109.46741 * 60.00377 * 1 2 3 26 26 H 1.08998 * 109.47534 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47558 * 59.99233 * 3 2 1 28 28 H 1.09008 * 109.47043 * 299.99918 * 3 2 1 29 29 H 1.09000 * 109.46884 * 60.00145 * 4 3 2 30 30 H 1.09000 * 109.46955 * 299.99461 * 4 3 2 31 31 H 0.97007 * 120.00067 * 180.02562 * 10 9 7 32 32 H 1.09005 * 109.47041 * 179.97438 * 20 18 17 33 33 H 1.08999 * 109.47709 * 299.99927 * 20 18 17 34 34 H 1.08996 * 109.47219 * 60.00490 * 20 18 17 35 35 H 1.09007 * 109.46712 * 300.00274 * 21 18 17 36 36 H 1.08996 * 109.47219 * 60.00121 * 22 21 18 37 37 H 1.08991 * 109.47403 * 180.02562 * 22 21 18 38 38 H 1.09005 * 109.47041 * 300.00866 * 22 21 18 39 39 H 1.09002 * 109.47077 * 59.99804 * 23 21 18 40 40 H 1.08995 * 109.47630 * 179.97438 * 23 21 18 41 41 H 1.09007 * 109.47011 * 300.00438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1485 2.5613 0.0000 6 6 4.4930 3.3183 -1.1138 7 6 4.3296 2.9323 -2.4652 8 1 3.9025 1.9695 -2.7039 9 6 4.7208 3.7968 -3.4910 10 7 5.2384 4.9647 -3.2015 11 14 4.5058 3.2869 -5.2751 12 1 3.1696 3.7207 -5.7563 13 1 5.5610 3.9246 -6.1028 14 1 4.6159 1.8101 -5.3846 15 7 5.0064 4.4871 -0.6795 16 7 5.0134 4.5047 0.6071 17 7 4.4768 3.3003 1.0813 18 6 4.3052 2.9155 2.4843 19 1 3.8631 1.9205 2.5368 20 6 5.6676 2.9050 3.1806 21 6 3.3848 3.9203 3.1799 22 6 2.0224 3.9309 2.4837 23 6 3.2060 3.5189 4.6454 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.8574 0.6434 -0.8891 30 1 3.8567 0.6438 0.8909 31 1 5.5097 5.5650 -3.9135 32 1 5.5398 2.6191 4.2247 33 1 6.3234 2.1890 2.6852 34 1 6.1101 3.8997 3.1282 35 1 3.8273 4.9152 3.1275 36 1 1.5799 2.9361 2.5361 37 1 1.3668 4.6470 2.9789 38 1 2.1501 4.2171 1.4397 39 1 4.1767 3.5117 5.1412 40 1 2.5506 4.2350 5.1410 41 1 2.7637 2.5240 4.6982 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545000.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:22 Heat of formation + Delta-G solvation = 0.865895 kcal Electronic energy + Delta-G solvation = -21496.096430 eV Core-core repulsion = 18411.723049 eV Total energy + Delta-G solvation = -3084.373381 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.99935 -38.81478 -38.24326 -35.27276 -34.37568 -32.94621 -30.73112 -30.15689 -28.01819 -27.39696 -26.51161 -24.99616 -24.08234 -22.68351 -21.08733 -20.40787 -18.69845 -17.56544 -17.21735 -16.81385 -16.62752 -16.28399 -15.71883 -15.50859 -15.01695 -14.87771 -14.44262 -14.26784 -14.01485 -13.59385 -13.23194 -13.05180 -12.96846 -12.87886 -12.82821 -12.77908 -12.49697 -12.19101 -12.11636 -12.08019 -11.94180 -11.89595 -11.63685 -11.44142 -11.13361 -10.76275 -10.55867 -10.18281 -9.34644 -8.30332 -6.18206 0.99603 1.42891 1.44087 1.56997 1.98285 2.33393 2.34038 2.89645 3.53057 3.54408 3.85272 3.94833 4.06224 4.17891 4.21178 4.26437 4.37278 4.48858 4.53297 4.57873 4.64888 4.72685 4.74259 4.76196 4.81068 4.86360 4.91763 4.98013 5.05163 5.08433 5.12643 5.21515 5.24121 5.40475 5.45036 5.55564 5.68043 6.23086 6.40573 6.49627 6.89811 7.10026 8.32461 8.69016 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.007301 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.852312 B = 3834.290539 C = 5122.850666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.078 3.922 4 C -0.008 4.008 5 C -0.088 4.088 6 C 0.114 3.886 7 C -0.479 4.479 8 H 0.087 0.913 9 C 0.023 3.977 10 N -0.825 5.825 11 Si 0.981 3.019 12 H -0.267 1.267 13 H -0.277 1.277 14 H -0.254 1.254 15 N -0.286 5.286 16 N -0.156 5.156 17 N -0.342 5.342 18 C 0.149 3.851 19 H 0.110 0.890 20 C -0.154 4.154 21 C -0.097 4.097 22 C -0.141 4.141 23 C -0.137 4.137 24 H 0.051 0.949 25 H 0.039 0.961 26 H 0.106 0.894 27 H 0.055 0.945 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.272 0.728 32 H 0.112 0.888 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.015 0.985 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.129 -8.728 12.225 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.001 3.999 4 C -0.048 4.048 5 C -0.223 4.223 6 C -0.019 4.019 7 C -0.516 4.516 8 H 0.105 0.895 9 C -0.191 4.191 10 N -0.454 5.454 11 Si 0.803 3.197 12 H -0.192 1.192 13 H -0.202 1.202 14 H -0.177 1.177 15 N -0.155 5.155 16 N -0.131 5.131 17 N -0.137 5.137 18 C 0.047 3.953 19 H 0.128 0.872 20 C -0.211 4.211 21 C -0.117 4.117 22 C -0.198 4.198 23 C -0.194 4.194 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.124 0.876 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.035 0.965 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.293 -7.279 12.602 16.278 hybrid contribution -0.404 -0.293 -1.427 1.511 sum -7.697 -7.572 11.175 15.539 Atomic orbital electron populations 1.22943 0.79587 1.04022 1.00566 1.87786 1.21432 1.27918 1.95550 1.22424 0.93229 0.84196 1.00099 1.19459 0.92577 0.89255 1.03496 1.21628 1.15115 0.98432 0.87101 1.19498 0.98639 0.88972 0.94784 1.18875 1.40758 1.03496 0.88442 0.89464 1.26703 0.92965 0.94149 1.05299 1.70178 1.31974 1.08110 1.35093 0.85226 0.78421 0.79619 0.76484 1.19168 1.20216 1.17711 1.75084 1.18622 1.20834 1.00949 1.81314 1.22318 1.03238 1.06252 1.49966 1.44226 1.13188 1.06365 1.21689 0.98137 0.99607 0.75841 0.87186 1.22147 0.94681 1.02227 1.02085 1.21393 0.94839 0.98372 0.97066 1.21808 0.96818 1.02407 0.98806 1.21839 1.03125 1.02565 0.91901 0.93059 0.94199 0.87581 0.92660 0.94671 0.90414 0.89733 0.91813 0.86961 0.93245 0.93208 0.92425 0.91309 0.91178 0.96548 0.90876 0.91243 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 11.01 113.37 1.25 1.78 16 2 O -0.41 -12.14 10.70 -148.98 -1.59 -13.74 16 3 C 0.08 2.58 5.92 71.98 0.43 3.01 16 4 C -0.01 -0.30 5.48 29.85 0.16 -0.14 16 5 C -0.09 -4.07 6.37 42.25 0.27 -3.80 16 6 C 0.11 6.47 6.72 39.67 0.27 6.73 16 7 C -0.48 -27.08 9.11 23.44 0.21 -26.87 16 8 H 0.09 4.58 7.29 -2.91 -0.02 4.56 16 9 C 0.02 1.25 5.49 85.18 0.47 1.72 16 10 N -0.83 -49.42 11.92 21.80 0.26 -49.16 16 11 Si 0.98 41.75 29.56 68.60 2.03 43.77 16 12 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 13 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 14 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 15 N -0.29 -17.35 10.56 -52.51 -0.55 -17.90 16 16 N -0.16 -8.30 13.62 37.02 0.50 -7.79 16 17 N -0.34 -14.69 2.52 -311.28 -0.78 -15.48 16 18 C 0.15 4.51 2.65 44.99 0.12 4.63 16 19 H 0.11 2.87 6.80 -2.38 -0.02 2.85 16 20 C -0.15 -4.09 9.11 71.98 0.66 -3.43 16 21 C -0.10 -2.59 2.64 -10.80 -0.03 -2.62 16 22 C -0.14 -3.95 8.53 71.98 0.61 -3.34 16 23 C -0.14 -2.33 8.84 71.98 0.64 -1.70 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.06 1.69 6.19 -2.39 -0.01 1.68 16 28 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.08 3.02 7.55 -2.39 -0.02 3.00 16 30 H 0.08 2.64 7.20 -2.39 -0.02 2.62 16 31 H 0.27 15.03 8.30 -92.70 -0.77 14.26 16 32 H 0.11 2.00 6.43 -2.38 -0.02 1.99 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.07 1.65 6.80 -2.39 -0.02 1.64 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.02 0.58 7.60 -2.38 -0.02 0.57 16 39 H 0.07 1.08 6.43 -2.39 -0.02 1.06 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -73.25 334.07 5.91 -67.34 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 1.00 Total: 16.96 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 5.05 Total: -24.01 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -0.58 Total: -90.33 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -1.59 Total: -13.74 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -73.25 5.91 -67.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545000.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.204 kcal (2) G-P(sol) polarization free energy of solvation -73.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds