Wall clock time and date at job start Mon Mar 30 2020 04:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99997 * 2 1 4 4 C 1.52995 * 109.47062 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.46771 * 179.97438 * 4 3 2 6 6 C 1.39007 * 126.77471 * 270.02670 * 5 4 3 7 7 C 1.41488 * 126.02226 * 359.94481 * 6 5 4 8 8 H 1.08001 * 120.00306 * 359.97438 * 7 6 5 9 9 C 1.39743 * 120.00262 * 180.02562 * 7 6 5 10 10 N 1.30985 * 119.99521 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00140 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46961 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.46986 * 119.99941 * 11 9 7 14 14 H 1.48498 * 109.46696 * 239.99736 * 11 9 7 15 15 N 1.34849 * 107.95763 * 179.97438 * 6 5 4 16 16 N 1.28672 * 109.63174 * 359.74710 * 15 6 5 17 17 N 1.35020 * 126.76761 * 90.00879 * 5 4 3 18 18 C 1.46504 * 126.49347 * 359.97319 * 17 5 4 19 19 H 1.09001 * 109.46891 * 0.02562 * 18 17 5 20 20 C 1.52997 * 109.47417 * 240.00497 * 18 17 5 21 21 C 1.53006 * 109.46883 * 120.00411 * 18 17 5 22 22 C 1.52997 * 109.47127 * 180.02562 * 21 18 17 23 23 C 1.52992 * 109.47223 * 300.00583 * 21 18 17 24 24 H 1.09000 * 109.47752 * 59.99659 * 1 2 3 25 25 H 1.09005 * 109.46758 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47185 * 299.99080 * 1 2 3 27 27 H 1.09003 * 109.46714 * 60.00203 * 3 2 1 28 28 H 1.08999 * 109.46937 * 300.00815 * 3 2 1 29 29 H 1.09003 * 109.47230 * 60.00470 * 4 3 2 30 30 H 1.08993 * 109.47490 * 300.00356 * 4 3 2 31 31 H 0.97004 * 119.99994 * 179.97438 * 10 9 7 32 32 H 1.09000 * 109.47140 * 180.02562 * 20 18 17 33 33 H 1.09001 * 109.47375 * 300.00052 * 20 18 17 34 34 H 1.09002 * 109.47045 * 60.00127 * 20 18 17 35 35 H 1.08998 * 109.46505 * 59.99948 * 21 18 17 36 36 H 1.09002 * 109.47153 * 180.02562 * 22 21 18 37 37 H 1.09001 * 109.46832 * 60.00321 * 22 21 18 38 38 H 1.09004 * 109.47261 * 300.00303 * 22 21 18 39 39 H 1.09001 * 109.47066 * 299.99881 * 23 21 18 40 40 H 1.08996 * 109.47747 * 59.99547 * 23 21 18 41 41 H 1.09002 * 109.47103 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5614 -0.0013 6 6 4.4858 3.3216 -1.1151 7 6 4.3154 2.9388 -2.4665 8 1 3.8881 1.9761 -2.7053 9 6 4.7010 3.8059 -3.4923 10 7 5.2196 4.9732 -3.2027 11 14 4.4754 3.3007 -5.2765 12 1 3.8725 1.9448 -5.3346 13 1 3.5797 4.2708 -5.9562 14 1 5.7952 3.2847 -5.9570 15 7 5.0047 4.4880 -0.6807 16 7 5.0081 4.5071 0.6059 17 7 4.4776 3.3000 1.0800 18 6 4.3063 2.9150 2.4831 19 1 3.8636 1.9204 2.5355 20 6 3.3867 3.9203 3.1792 21 6 5.6690 2.9036 3.1788 22 6 5.4903 2.5010 4.6440 23 6 6.5886 1.8984 2.4827 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.8567 0.6440 -0.8909 30 1 3.8574 0.6436 0.8890 31 1 5.4877 5.5750 -3.9147 32 1 3.2597 3.6341 4.2233 33 1 3.8297 4.9149 3.1269 34 1 2.4159 3.9284 2.6836 35 1 6.1120 3.8981 3.1263 36 1 6.4610 2.4933 5.1397 37 1 5.0475 1.5063 4.6960 38 1 4.8350 3.2168 5.1402 39 1 6.1456 0.9039 2.5350 40 1 6.7160 2.1848 1.4387 41 1 7.5595 1.8906 2.9780 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:27 Heat of formation + Delta-G solvation = 20.915730 kcal Electronic energy + Delta-G solvation = -21361.230612 eV Core-core repulsion = 18277.726658 eV Total energy + Delta-G solvation = -3083.503954 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.15223 -37.53200 -36.89194 -33.35398 -32.77171 -31.36918 -29.25373 -28.46349 -26.84239 -26.17292 -24.74800 -23.56523 -22.55915 -21.06746 -19.41484 -18.76273 -16.93981 -16.16597 -15.76445 -15.29459 -14.94726 -14.85463 -14.50697 -14.18220 -13.60924 -13.29926 -12.94345 -12.76133 -12.46727 -12.25677 -12.07732 -11.97581 -11.62768 -11.52809 -11.20757 -11.15849 -10.97007 -10.84946 -10.67578 -10.65743 -10.57813 -10.42902 -10.15758 -9.64870 -9.35840 -9.25549 -8.83342 -8.37858 -7.38417 -6.35652 -4.14677 2.80592 3.16585 3.22384 3.26616 3.59982 4.12233 4.15558 4.36140 4.79331 5.04847 5.20026 5.38065 5.38876 5.45718 5.50403 5.55012 5.57359 5.62330 5.73312 5.77117 5.81210 5.84042 5.89911 5.96187 6.01647 6.04581 6.15940 6.21958 6.35380 6.39608 6.48212 6.58256 6.64829 6.94709 7.18751 7.45279 7.47141 7.54658 8.21413 8.45896 8.84657 9.10723 10.25047 10.60932 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.014272 B = 0.007317 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.440153 B = 3825.864293 C = 5200.571519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.067 3.933 4 C -0.008 4.008 5 C -0.120 4.120 6 C 0.158 3.842 7 C -0.449 4.449 8 H 0.081 0.919 9 C 0.073 3.927 10 N -0.775 5.775 11 Si 0.904 3.096 12 H -0.263 1.263 13 H -0.277 1.277 14 H -0.277 1.277 15 N -0.232 5.232 16 N -0.124 5.124 17 N -0.365 5.365 18 C 0.167 3.833 19 H 0.087 0.913 20 C -0.159 4.159 21 C -0.102 4.102 22 C -0.145 4.145 23 C -0.144 4.144 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.271 0.729 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.743 -7.058 10.175 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.010 4.010 4 C -0.048 4.048 5 C -0.251 4.251 6 C 0.029 3.971 7 C -0.486 4.486 8 H 0.099 0.901 9 C -0.145 4.145 10 N -0.401 5.401 11 Si 0.729 3.271 12 H -0.187 1.187 13 H -0.203 1.203 14 H -0.202 1.202 15 N -0.104 5.104 16 N -0.100 5.100 17 N -0.162 5.162 18 C 0.063 3.937 19 H 0.105 0.895 20 C -0.217 4.217 21 C -0.122 4.122 22 C -0.203 4.203 23 C -0.201 4.201 24 H 0.058 0.942 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.923 -5.626 10.482 12.526 hybrid contribution -0.801 -0.914 -1.045 1.603 sum -4.724 -6.539 9.437 12.415 Atomic orbital electron populations 1.22661 0.81862 1.02005 0.99792 1.87826 1.19060 1.29222 1.95454 1.22688 0.94673 0.83352 1.00289 1.19366 0.91142 0.91759 1.02500 1.21034 1.18551 0.97799 0.87670 1.18972 0.96753 0.88199 0.93224 1.18589 1.39514 1.02802 0.87645 0.90084 1.25776 0.93693 0.94441 1.00639 1.70030 1.29919 1.06538 1.33631 0.86337 0.78473 0.79509 0.82778 1.18704 1.20291 1.20237 1.75138 1.16249 1.19372 0.99615 1.81438 1.20224 1.01258 1.07055 1.49509 1.47790 1.14506 1.04372 1.21025 0.95751 0.98318 0.78612 0.89533 1.22158 0.99465 1.00291 0.99788 1.21425 0.95178 1.01054 0.94502 1.21884 1.01764 1.01289 0.95355 1.21772 0.98521 0.98316 1.01511 0.94155 0.90165 0.94624 0.94403 0.92311 0.89671 0.92539 0.91855 0.91397 0.91290 0.92554 0.90032 0.92502 0.92706 0.92289 0.93062 0.91899 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.40 -6.48 10.70 -35.23 -0.38 -6.86 16 3 C 0.07 1.17 5.92 37.16 0.22 1.39 16 4 C -0.01 -0.15 5.48 -27.88 -0.15 -0.30 16 5 C -0.12 -2.74 6.37 -80.90 -0.51 -3.25 16 6 C 0.16 4.31 6.72 -85.02 -0.57 3.74 16 7 C -0.45 -12.20 9.11 -37.78 -0.34 -12.55 16 8 H 0.08 2.07 7.30 -52.49 -0.38 1.69 16 9 C 0.07 1.96 5.49 -17.35 -0.10 1.86 16 10 N -0.77 -21.97 11.92 55.54 0.66 -21.31 16 11 Si 0.90 19.71 29.56 -169.99 -5.02 14.69 16 12 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 15 N -0.23 -6.65 10.56 32.05 0.34 -6.32 16 16 N -0.12 -3.15 13.62 60.35 0.82 -2.33 16 17 N -0.37 -7.80 2.52 -49.73 -0.13 -7.92 16 18 C 0.17 2.71 2.65 -67.93 -0.18 2.53 16 19 H 0.09 1.31 6.80 -51.93 -0.35 0.95 16 20 C -0.16 -2.28 9.11 37.16 0.34 -1.95 16 21 C -0.10 -1.48 2.64 -90.62 -0.24 -1.72 16 22 C -0.15 -1.58 8.84 37.16 0.33 -1.25 16 23 C -0.14 -2.19 9.03 37.15 0.34 -1.86 16 24 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.68 7.56 -51.93 -0.39 1.29 16 30 H 0.06 0.97 7.20 -51.93 -0.37 0.60 16 31 H 0.27 7.05 8.30 -40.82 -0.34 6.71 16 32 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.20 7.60 -51.93 -0.39 0.80 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 337.89 15.07 5.09 5.09 Total: -1.00 -31.11 337.89 -5.15 -36.26 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.77 Total: 0.51 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 0.24 Total: -11.82 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 1.70 Total: -37.87 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.38 Total: -6.86 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.11 -5.15 -36.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.171 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds