Wall clock time and date at job start Mon Mar 30 2020 04:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99997 * 2 1 4 4 C 1.52995 * 109.47062 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.46771 * 179.97438 * 4 3 2 6 6 C 1.39007 * 126.77471 * 270.02670 * 5 4 3 7 7 C 1.41488 * 126.02226 * 359.94481 * 6 5 4 8 8 H 1.08001 * 120.00306 * 359.97438 * 7 6 5 9 9 C 1.39743 * 120.00262 * 180.02562 * 7 6 5 10 10 N 1.30985 * 119.99521 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00140 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46961 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.46986 * 119.99941 * 11 9 7 14 14 H 1.48498 * 109.46696 * 239.99736 * 11 9 7 15 15 N 1.34849 * 107.95763 * 179.97438 * 6 5 4 16 16 N 1.28672 * 109.63174 * 359.74710 * 15 6 5 17 17 N 1.35020 * 126.76761 * 90.00879 * 5 4 3 18 18 C 1.46504 * 126.49347 * 359.97319 * 17 5 4 19 19 H 1.09001 * 109.46891 * 0.02562 * 18 17 5 20 20 C 1.52997 * 109.47417 * 240.00497 * 18 17 5 21 21 C 1.53006 * 109.46883 * 120.00411 * 18 17 5 22 22 C 1.52997 * 109.47127 * 180.02562 * 21 18 17 23 23 C 1.52992 * 109.47223 * 300.00583 * 21 18 17 24 24 H 1.09000 * 109.47752 * 59.99659 * 1 2 3 25 25 H 1.09005 * 109.46758 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47185 * 299.99080 * 1 2 3 27 27 H 1.09003 * 109.46714 * 60.00203 * 3 2 1 28 28 H 1.08999 * 109.46937 * 300.00815 * 3 2 1 29 29 H 1.09003 * 109.47230 * 60.00470 * 4 3 2 30 30 H 1.08993 * 109.47490 * 300.00356 * 4 3 2 31 31 H 0.97004 * 119.99994 * 179.97438 * 10 9 7 32 32 H 1.09000 * 109.47140 * 180.02562 * 20 18 17 33 33 H 1.09001 * 109.47375 * 300.00052 * 20 18 17 34 34 H 1.09002 * 109.47045 * 60.00127 * 20 18 17 35 35 H 1.08998 * 109.46505 * 59.99948 * 21 18 17 36 36 H 1.09002 * 109.47153 * 180.02562 * 22 21 18 37 37 H 1.09001 * 109.46832 * 60.00321 * 22 21 18 38 38 H 1.09004 * 109.47261 * 300.00303 * 22 21 18 39 39 H 1.09001 * 109.47066 * 299.99881 * 23 21 18 40 40 H 1.08996 * 109.47747 * 59.99547 * 23 21 18 41 41 H 1.09002 * 109.47103 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5614 -0.0013 6 6 4.4858 3.3216 -1.1151 7 6 4.3154 2.9388 -2.4665 8 1 3.8881 1.9761 -2.7053 9 6 4.7010 3.8059 -3.4923 10 7 5.2196 4.9732 -3.2027 11 14 4.4754 3.3007 -5.2765 12 1 3.8725 1.9448 -5.3346 13 1 3.5797 4.2708 -5.9562 14 1 5.7952 3.2847 -5.9570 15 7 5.0047 4.4880 -0.6807 16 7 5.0081 4.5071 0.6059 17 7 4.4776 3.3000 1.0800 18 6 4.3063 2.9150 2.4831 19 1 3.8636 1.9204 2.5355 20 6 3.3867 3.9203 3.1792 21 6 5.6690 2.9036 3.1788 22 6 5.4903 2.5010 4.6440 23 6 6.5886 1.8984 2.4827 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.8567 0.6440 -0.8909 30 1 3.8574 0.6436 0.8890 31 1 5.4877 5.5750 -3.9147 32 1 3.2597 3.6341 4.2233 33 1 3.8297 4.9149 3.1269 34 1 2.4159 3.9284 2.6836 35 1 6.1120 3.8981 3.1263 36 1 6.4610 2.4933 5.1397 37 1 5.0475 1.5063 4.6960 38 1 4.8350 3.2168 5.1402 39 1 6.1456 0.9039 2.5350 40 1 6.7160 2.1848 1.4387 41 1 7.5595 1.8906 2.9780 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:26 Heat of formation + Delta-G solvation = 0.622247 kcal Electronic energy + Delta-G solvation = -21362.110604 eV Core-core repulsion = 18277.726658 eV Total energy + Delta-G solvation = -3084.383946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.99377 -38.80725 -38.24619 -35.27002 -34.40259 -32.89024 -30.73010 -30.19628 -27.95320 -27.39437 -26.52638 -25.01002 -24.06874 -22.67738 -21.11256 -20.36069 -18.71075 -17.60368 -17.16072 -16.77901 -16.63611 -16.36380 -15.71580 -15.47905 -14.99647 -14.90973 -14.43543 -14.20613 -14.01956 -13.58265 -13.16837 -13.12861 -12.95500 -12.90209 -12.83665 -12.75731 -12.49834 -12.20993 -12.12794 -12.05727 -11.91940 -11.89387 -11.64084 -11.44027 -11.14867 -10.76175 -10.59098 -10.18050 -9.34635 -8.30414 -6.18131 0.99559 1.42687 1.43172 1.58341 1.98195 2.33380 2.34096 2.89296 3.53110 3.54881 3.85663 3.95857 4.05393 4.19962 4.22719 4.25568 4.37727 4.51258 4.53219 4.55901 4.64486 4.71528 4.75202 4.76851 4.81226 4.86267 4.94008 4.98577 5.04649 5.07184 5.13179 5.22243 5.25444 5.39974 5.45422 5.55789 5.68444 6.22406 6.40991 6.49660 6.89931 7.10189 8.32575 8.69151 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.014272 B = 0.007317 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.440153 B = 3825.864293 C = 5200.571519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.081 3.919 4 C -0.007 4.007 5 C -0.088 4.088 6 C 0.114 3.886 7 C -0.478 4.478 8 H 0.088 0.912 9 C 0.022 3.978 10 N -0.825 5.825 11 Si 0.981 3.019 12 H -0.251 1.251 13 H -0.273 1.273 14 H -0.274 1.274 15 N -0.286 5.286 16 N -0.156 5.156 17 N -0.342 5.342 18 C 0.150 3.850 19 H 0.110 0.890 20 C -0.153 4.153 21 C -0.098 4.098 22 C -0.137 4.137 23 C -0.141 4.141 24 H 0.040 0.960 25 H 0.106 0.894 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.272 0.728 32 H 0.112 0.888 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.013 0.987 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.243 -9.637 12.195 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.003 3.997 4 C -0.047 4.047 5 C -0.222 4.222 6 C -0.019 4.019 7 C -0.515 4.515 8 H 0.106 0.894 9 C -0.191 4.191 10 N -0.454 5.454 11 Si 0.803 3.197 12 H -0.175 1.175 13 H -0.198 1.198 14 H -0.199 1.199 15 N -0.155 5.155 16 N -0.132 5.132 17 N -0.137 5.137 18 C 0.048 3.952 19 H 0.128 0.872 20 C -0.210 4.210 21 C -0.117 4.117 22 C -0.194 4.194 23 C -0.198 4.198 24 H 0.059 0.941 25 H 0.124 0.876 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.033 0.967 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.421 -8.187 12.573 15.953 hybrid contribution -0.403 -0.270 -1.421 1.501 sum -5.823 -8.457 11.152 15.159 Atomic orbital electron populations 1.22945 0.79553 1.04033 1.00578 1.87790 1.21471 1.27881 1.95547 1.22334 0.93271 0.84180 0.99887 1.19449 0.92460 0.89254 1.03507 1.21626 1.15102 0.98398 0.87089 1.19504 0.98571 0.89045 0.94799 1.18904 1.40711 1.03440 0.88414 0.89440 1.26708 0.92999 0.94137 1.05302 1.70186 1.32100 1.08083 1.35018 0.85174 0.78428 0.79484 0.76652 1.17450 1.19824 1.19887 1.75083 1.18462 1.21005 1.00949 1.81314 1.22449 1.03137 1.06258 1.49969 1.44448 1.12949 1.06373 1.21688 0.97724 0.99991 0.75836 0.87169 1.22141 0.98115 0.98719 1.02070 1.21401 0.93501 0.99725 0.97094 1.21839 1.03130 1.02550 0.91881 1.21754 1.00096 0.99294 0.98689 0.94134 0.87576 0.93093 0.93210 0.94423 0.90402 0.89731 0.91829 0.86971 0.93186 0.93247 0.92486 0.91301 0.90884 0.90854 0.91240 0.96742 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 11.01 113.37 1.25 1.78 16 2 O -0.41 -12.16 10.70 -148.98 -1.59 -13.76 16 3 C 0.08 2.68 5.92 71.98 0.43 3.11 16 4 C -0.01 -0.26 5.48 29.85 0.16 -0.09 16 5 C -0.09 -4.03 6.37 42.25 0.27 -3.76 16 6 C 0.11 6.45 6.72 39.67 0.27 6.71 16 7 C -0.48 -26.98 9.11 23.44 0.21 -26.76 16 8 H 0.09 4.59 7.30 -2.91 -0.02 4.57 16 9 C 0.02 1.23 5.49 85.18 0.47 1.70 16 10 N -0.83 -49.41 11.92 21.80 0.26 -49.15 16 11 Si 0.98 41.74 29.56 68.60 2.03 43.76 16 12 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 13 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 15 N -0.29 -17.35 10.56 -52.52 -0.55 -17.91 16 16 N -0.16 -8.32 13.62 37.02 0.50 -7.82 16 17 N -0.34 -14.69 2.52 -311.26 -0.78 -15.47 16 18 C 0.15 4.52 2.65 44.99 0.12 4.64 16 19 H 0.11 2.87 6.80 -2.39 -0.02 2.85 16 20 C -0.15 -4.01 9.11 71.98 0.66 -3.36 16 21 C -0.10 -2.64 2.64 -10.79 -0.03 -2.67 16 22 C -0.14 -2.37 8.84 71.98 0.64 -1.73 16 23 C -0.14 -4.09 9.03 71.98 0.65 -3.44 16 24 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 25 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 3.02 7.56 -2.39 -0.02 3.00 16 30 H 0.08 2.63 7.20 -2.39 -0.02 2.61 16 31 H 0.27 14.98 8.30 -92.71 -0.77 14.21 16 32 H 0.11 1.97 6.43 -2.39 -0.02 1.96 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.09 6.43 -2.38 -0.02 1.07 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.01 0.53 7.60 -2.39 -0.02 0.51 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -73.30 337.89 5.94 -67.36 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 1.00 Total: 16.86 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 5.09 Total: -23.88 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -0.58 Total: -90.35 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -1.59 Total: -13.76 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -73.30 5.94 -67.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.981 kcal (2) G-P(sol) polarization free energy of solvation -73.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds