Wall clock time and date at job start Mon Mar 30 2020 04:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42907 * 113.99965 * 2 1 4 4 C 1.52998 * 109.47392 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46787 * 304.99796 * 4 3 2 6 6 C 1.52997 * 109.47489 * 64.99757 * 4 3 2 7 7 C 1.53000 * 109.47292 * 185.00138 * 4 3 2 8 8 N 1.46498 * 109.47328 * 175.15447 * 7 4 3 9 9 N 1.40121 * 126.48980 * 95.21697 * 8 7 4 10 10 N 1.28678 * 108.93274 * 179.97438 * 9 8 7 11 11 C 1.34837 * 109.63275 * 359.72249 * 10 9 8 12 12 C 1.41491 * 126.01839 * 180.27135 * 11 10 9 13 13 H 1.08003 * 120.00354 * 180.19820 * 12 11 10 14 14 C 1.39745 * 120.00351 * 0.20222 * 12 11 10 15 15 N 1.30980 * 119.99359 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00102 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47312 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46830 * 119.99950 * 16 14 12 19 19 H 1.48503 * 109.47271 * 239.99641 * 16 14 12 20 20 C 1.35016 * 126.49223 * 275.19314 * 8 7 4 21 21 C 1.50704 * 126.77461 * 0.02562 * 20 8 7 22 22 C 1.52996 * 109.47222 * 240.39698 * 21 20 8 23 23 C 1.53001 * 109.47045 * 120.39376 * 21 20 8 24 24 H 1.08995 * 109.47335 * 299.99918 * 1 2 3 25 25 H 1.08997 * 109.47411 * 60.00404 * 1 2 3 26 26 H 1.09003 * 109.46949 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46961 * 59.99839 * 3 2 1 28 28 H 1.09001 * 109.46842 * 300.00105 * 3 2 1 29 29 H 1.08999 * 109.47475 * 185.32050 * 6 4 3 30 30 H 1.09006 * 109.47166 * 305.32461 * 6 4 3 31 31 H 1.09005 * 109.46864 * 65.32152 * 6 4 3 32 32 H 1.09006 * 109.47062 * 55.15634 * 7 4 3 33 33 H 1.08997 * 109.47009 * 295.16099 * 7 4 3 34 34 H 0.97004 * 119.99500 * 179.97438 * 15 14 12 35 35 H 1.08996 * 109.47029 * 0.39883 * 21 20 8 36 36 H 1.09007 * 109.46929 * 54.28459 * 22 21 20 37 37 H 1.08994 * 109.47434 * 174.28722 * 22 21 20 38 38 H 1.09004 * 109.46953 * 294.29007 * 22 21 20 39 39 H 1.09005 * 109.46927 * 60.00433 * 23 21 20 40 40 H 1.08999 * 109.46946 * 180.02562 * 23 21 20 41 41 H 1.08998 * 109.47534 * 300.00454 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8514 0.5684 0.8410 6 6 3.9952 0.5370 -1.3082 7 6 4.1573 2.5770 0.1251 8 7 5.6124 2.4533 0.2409 9 7 6.5421 2.5438 -0.8036 10 7 7.7256 2.3852 -0.3240 11 6 7.6526 2.1951 1.0089 12 6 8.7475 1.9911 1.8815 13 1 8.5764 1.8450 2.9378 14 6 10.0505 1.9785 1.3766 15 7 10.2580 2.1552 0.0954 16 14 11.4961 1.7098 2.5287 17 1 10.9973 1.5362 3.9166 18 1 12.2395 0.4928 2.1145 19 1 12.4007 2.8861 2.4707 20 6 6.3117 2.2309 1.3742 21 6 5.7501 2.0616 2.7624 22 6 6.3091 3.1544 3.6756 23 6 6.1461 0.6884 3.3087 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 5.0708 0.3646 -1.2697 30 1 3.4795 -0.4137 -1.4438 31 1 3.7629 1.1987 -2.1428 32 1 3.7630 3.0723 1.0125 33 1 3.9118 3.1658 -0.7587 34 1 11.1625 2.1469 -0.2550 35 1 4.6634 2.1387 2.7265 36 1 6.1148 4.1318 3.2336 37 1 5.8269 3.0945 4.6512 38 1 7.3839 3.0157 3.7923 39 1 7.2328 0.6113 3.3446 40 1 5.7395 0.5657 4.3126 41 1 5.7479 -0.0902 2.6581 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545339.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:22 Heat of formation + Delta-G solvation = 1.981641 kcal Electronic energy + Delta-G solvation = -21252.678955 eV Core-core repulsion = 18168.353957 eV Total energy + Delta-G solvation = -3084.324998 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.93069 -39.21062 -36.80138 -36.33007 -35.00700 -32.79617 -30.43888 -28.26814 -28.02811 -27.80989 -26.97889 -25.89191 -23.32158 -22.31669 -21.52804 -20.05160 -19.10048 -17.41235 -16.97297 -16.90332 -16.67793 -16.14600 -15.70334 -15.39594 -15.06627 -14.99673 -14.44946 -14.11905 -13.69288 -13.63758 -13.24903 -13.13570 -12.93965 -12.83346 -12.76804 -12.55202 -12.36505 -12.31045 -12.06739 -11.92594 -11.87303 -11.71290 -11.46610 -11.37982 -11.12088 -10.59217 -10.57291 -10.17802 -9.24663 -8.23697 -6.08940 1.06844 1.44769 1.45507 1.59846 1.99727 2.36743 2.41264 2.89867 3.61904 3.65610 3.85429 3.99224 4.07694 4.14057 4.25809 4.31701 4.46534 4.49164 4.55418 4.57713 4.65492 4.72857 4.78463 4.88963 4.91520 4.94807 4.97805 5.05412 5.13073 5.18096 5.26569 5.27262 5.35068 5.57481 5.58931 5.60071 5.83947 6.26047 6.49207 6.54283 6.99272 7.18227 8.38406 8.76309 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.027657 B = 0.005161 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.167311 B = 5424.155519 C = 5887.566499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.077 3.923 4 C -0.095 4.095 5 H 0.068 0.932 6 C -0.131 4.131 7 C 0.131 3.869 8 N -0.357 5.357 9 N -0.172 5.172 10 N -0.287 5.287 11 C 0.112 3.888 12 C -0.468 4.468 13 H 0.100 0.900 14 C 0.018 3.982 15 N -0.832 5.832 16 Si 0.976 3.024 17 H -0.246 1.246 18 H -0.278 1.278 19 H -0.277 1.277 20 C -0.073 4.073 21 C 0.009 3.991 22 C -0.137 4.137 23 C -0.138 4.138 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.018 0.982 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.268 0.732 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.791 -1.117 6.446 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.000 4.000 4 C -0.115 4.115 5 H 0.086 0.914 6 C -0.188 4.188 7 C 0.009 3.991 8 N -0.150 5.150 9 N -0.146 5.146 10 N -0.156 5.156 11 C -0.021 4.021 12 C -0.505 4.505 13 H 0.118 0.882 14 C -0.195 4.195 15 N -0.461 5.461 16 Si 0.798 3.202 17 H -0.169 1.169 18 H -0.204 1.204 19 H -0.202 1.202 20 C -0.208 4.208 21 C -0.012 4.012 22 C -0.194 4.194 23 C -0.196 4.196 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.374 -1.026 4.655 18.016 hybrid contribution 0.757 -0.078 0.703 1.036 sum -16.616 -1.105 5.357 17.494 Atomic orbital electron populations 1.22920 0.79290 1.03695 1.01069 1.87855 1.21565 1.28454 1.95644 1.22395 0.90611 0.84859 1.02109 1.21376 0.95106 0.95827 0.99238 0.91361 1.21604 0.99205 1.01068 0.96938 1.21793 0.74468 0.97557 1.05287 1.49818 1.07459 1.51551 1.06200 1.81380 0.93061 1.28174 1.11990 1.75036 1.11941 1.17195 1.11471 1.19476 0.92373 1.01203 0.89000 1.19025 0.89144 1.47441 0.94874 0.88229 1.26729 1.02915 0.93295 0.96532 1.70211 1.22263 1.38783 1.14825 0.85244 0.77511 0.77832 0.79596 1.16885 1.20394 1.20224 1.22248 0.91933 1.16056 0.90600 1.19337 0.98755 0.96584 0.86534 1.21787 1.01927 0.96860 0.98861 1.21794 1.02290 0.94932 1.00593 0.92723 0.93090 0.88928 0.90721 0.91500 0.96295 0.91784 0.92133 0.86865 0.88129 0.92202 0.89728 0.94169 0.89800 0.92969 0.92937 0.89863 0.94501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.26 10.15 -148.98 -1.51 -10.78 16 3 C 0.08 1.51 5.32 71.98 0.38 1.89 16 4 C -0.10 -2.60 2.83 -10.80 -0.03 -2.63 16 5 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 6 C -0.13 -4.18 8.97 71.98 0.65 -3.54 16 7 C 0.13 3.84 5.45 86.38 0.47 4.31 16 8 N -0.36 -15.36 3.19 -331.63 -1.06 -16.42 16 9 N -0.17 -9.23 13.42 37.02 0.50 -8.74 16 10 N -0.29 -17.56 10.55 -52.52 -0.55 -18.11 16 11 C 0.11 6.28 6.60 39.67 0.26 6.55 16 12 C -0.47 -25.60 7.80 23.44 0.18 -25.42 16 13 H 0.10 4.94 4.58 -2.91 -0.01 4.93 16 14 C 0.02 0.99 5.49 85.18 0.47 1.46 16 15 N -0.83 -50.05 11.92 21.80 0.26 -49.79 16 16 Si 0.98 41.39 29.56 68.60 2.03 43.42 16 17 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 18 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 20 C -0.07 -3.29 5.80 42.26 0.24 -3.04 16 21 C 0.01 0.29 3.04 -11.54 -0.04 0.26 16 22 C -0.14 -4.29 8.97 71.98 0.65 -3.64 16 23 C -0.14 -4.50 9.04 71.98 0.65 -3.85 16 24 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.02 0.75 7.58 -2.39 -0.02 0.73 16 30 H 0.06 1.92 7.69 -2.38 -0.02 1.90 16 31 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.11 2.58 7.41 -2.38 -0.02 2.57 16 33 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.27 14.98 8.30 -92.71 -0.77 14.21 16 35 H 0.08 2.32 7.01 -2.39 -0.02 2.30 16 36 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.05 1.90 5.90 -2.38 -0.01 1.88 16 39 H 0.05 1.99 5.73 -2.38 -0.01 1.97 16 40 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -74.92 332.33 5.80 -69.12 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 1.01 Total: 17.34 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 5.14 Total: -26.04 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -0.85 Total: -93.06 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -1.51 Total: -10.78 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -74.92 5.80 -69.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545339.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.099 kcal (2) G-P(sol) polarization free energy of solvation -74.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds