Wall clock time and date at job start Mon Mar 30 2020 04:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47085 * 2 1 4 4 C 1.52992 * 109.47705 * 120.00526 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.39011 * 126.77452 * 270.02684 * 6 5 4 8 8 C 1.41495 * 126.01819 * 359.97438 * 7 6 5 9 9 H 1.08003 * 120.00035 * 359.97438 * 8 7 6 10 10 C 1.39743 * 119.99851 * 180.02562 * 8 7 6 11 11 N 1.30981 * 119.99807 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99849 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47338 * 59.99642 * 12 10 8 14 14 H 1.48494 * 109.46974 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47190 * 299.99546 * 12 10 8 16 16 N 1.34842 * 107.95903 * 179.97438 * 7 6 5 17 17 N 1.28664 * 109.63641 * 0.02562 * 16 7 6 18 18 N 1.35022 * 126.76761 * 89.70739 * 6 5 4 19 19 C 1.46501 * 126.49474 * 359.97438 * 18 6 5 20 20 C 1.53005 * 109.47076 * 89.99792 * 19 18 6 21 21 H 1.08995 * 109.46952 * 54.99623 * 20 19 18 22 22 C 1.52996 * 109.47052 * 174.99887 * 20 19 18 23 23 O 1.42898 * 109.46978 * 294.99975 * 20 19 18 24 24 H 1.09000 * 109.46929 * 299.99211 * 1 2 3 25 25 H 1.09000 * 109.47812 * 59.99192 * 1 2 3 26 26 H 1.09001 * 109.46974 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46661 * 240.00336 * 2 1 3 28 28 H 1.09000 * 109.46593 * 60.00583 * 3 2 1 29 29 H 1.08998 * 109.46891 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47334 * 300.00556 * 3 2 1 31 31 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 32 32 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 0.96999 * 119.99753 * 180.02562 * 11 10 8 36 36 H 1.08994 * 109.46943 * 209.99523 * 19 18 6 37 37 H 1.08993 * 109.47111 * 329.99762 * 19 18 6 38 38 H 1.09000 * 109.47062 * 179.97438 * 22 20 19 39 39 H 1.09001 * 109.47054 * 300.00342 * 22 20 19 40 40 H 1.09003 * 109.47038 * 59.99578 * 22 20 19 41 41 H 0.96701 * 114.00380 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1877 6 6 4.0674 -1.5410 2.4184 7 6 4.4359 -0.9561 3.6244 8 6 4.4073 0.4270 3.9214 9 1 4.0765 1.1331 3.1741 10 6 4.8081 0.8795 5.1814 11 7 5.2097 0.0232 6.0875 12 14 4.7710 2.7055 5.5732 13 1 3.3825 3.2135 5.4345 14 1 5.2403 2.9227 6.9652 15 1 5.6603 3.4320 4.6316 16 7 4.8253 -1.9390 4.4613 17 7 4.7265 -3.0765 3.8681 18 7 4.2428 -2.8713 2.5691 19 6 3.9796 -3.9042 1.5640 20 6 5.2419 -4.1398 0.7322 21 1 6.0738 -4.3796 1.3943 22 6 5.0067 -5.3032 -0.2332 23 8 5.5498 -2.9588 -0.0111 24 1 -0.3633 0.5137 0.8901 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.6767 1.9562 0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6055 -1.7199 1.2950 32 1 1.7517 -0.1585 2.1368 33 1 3.9995 0.1675 1.1418 34 1 3.8532 -1.3940 0.2999 35 1 5.4876 0.3373 6.9621 36 1 3.6942 -4.8310 2.0617 37 1 3.1699 -3.5781 0.9113 38 1 5.9059 -5.4708 -0.8261 39 1 4.7718 -6.2040 0.3338 40 1 4.1747 -5.0634 -0.8953 41 1 6.3401 -3.0363 -0.5630 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:19 Heat of formation + Delta-G solvation = 7.916450 kcal Electronic energy + Delta-G solvation = -21272.451627 eV Core-core repulsion = 18188.383981 eV Total energy + Delta-G solvation = -3084.067646 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.94503 -37.39991 -36.46526 -33.62747 -32.77623 -31.55691 -30.25109 -28.10602 -26.89444 -26.34874 -24.68788 -23.04163 -21.63008 -20.14768 -19.54776 -18.83076 -17.30810 -16.96866 -15.28570 -15.04946 -14.81345 -14.70252 -13.99599 -13.87930 -13.56535 -13.18393 -13.07047 -12.56561 -12.36147 -12.18057 -12.05603 -12.01359 -11.89333 -11.41097 -11.16105 -11.04742 -10.88420 -10.80865 -10.68871 -10.40814 -10.21281 -10.13889 -9.95251 -9.88010 -9.55958 -9.16653 -8.70882 -8.28158 -7.24377 -6.24147 -4.01633 2.94638 3.24614 3.26581 3.28570 3.69594 4.23027 4.31223 4.43395 4.94122 5.09172 5.16895 5.19400 5.23279 5.29601 5.39282 5.64888 5.68112 5.81307 5.82853 5.84101 5.86748 5.92302 6.05334 6.09968 6.13081 6.20002 6.22086 6.48659 6.51068 6.55339 6.60356 6.82674 7.01824 7.11108 7.26982 7.57975 7.68419 7.77425 8.29597 8.55657 8.97449 9.22454 10.35134 10.73281 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.007784 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.044645 B = 3596.254872 C = 5189.656096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.108 4.108 5 C -0.016 4.016 6 C -0.082 4.082 7 C 0.146 3.854 8 C -0.450 4.450 9 H 0.079 0.921 10 C 0.073 3.927 11 N -0.782 5.782 12 Si 0.902 3.098 13 H -0.269 1.269 14 H -0.282 1.282 15 H -0.269 1.269 16 N -0.228 5.228 17 N -0.148 5.148 18 N -0.373 5.373 19 C 0.146 3.854 20 C 0.086 3.914 21 H 0.060 0.940 22 C -0.182 4.182 23 O -0.552 6.552 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.270 0.730 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.089 -3.851 -13.849 14.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.146 4.146 5 C -0.056 4.056 6 C -0.214 4.214 7 C 0.015 3.985 8 C -0.486 4.486 9 H 0.097 0.903 10 C -0.145 4.145 11 N -0.409 5.409 12 Si 0.728 3.272 13 H -0.194 1.194 14 H -0.208 1.208 15 H -0.194 1.194 16 N -0.099 5.099 17 N -0.124 5.124 18 N -0.168 5.168 19 C 0.021 3.979 20 C 0.025 3.975 21 H 0.078 0.922 22 C -0.240 4.240 23 O -0.357 6.357 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.075 -4.751 -12.229 13.738 hybrid contribution 0.192 1.158 -0.858 1.454 sum -3.883 -3.593 -13.087 14.116 Atomic orbital electron populations 1.21838 0.96015 1.01159 1.01275 1.21117 0.94937 0.96603 0.98687 1.21880 1.01732 0.95862 1.01064 1.21653 0.96248 0.99369 0.97322 1.19690 0.93464 0.99455 0.92996 1.21424 1.16862 0.83546 0.99558 1.18966 0.98425 0.94142 0.86923 1.18439 1.42414 0.89392 0.98384 0.90327 1.25739 0.93884 0.98734 0.96123 1.70012 1.32089 1.34718 1.04101 0.86488 0.79168 0.83779 0.77770 1.19418 1.20753 1.19424 1.75039 1.16103 0.95037 1.23711 1.81475 1.22146 1.20585 0.88163 1.49383 1.50216 1.05047 1.12128 1.21383 0.96173 0.91739 0.88580 1.22235 0.97918 0.84984 0.92323 0.92169 1.22461 1.02588 0.98797 1.00143 1.86638 1.49549 1.36779 1.62752 0.92721 0.93323 0.93189 0.91850 0.92518 0.92026 0.93654 0.93417 0.91351 0.90768 0.91683 0.91960 0.88747 0.89667 0.92148 0.91444 0.91695 0.78226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.19 37.16 0.34 -1.42 16 2 C -0.09 -1.30 2.92 -90.62 -0.26 -1.57 16 3 C -0.15 -2.00 8.95 37.16 0.33 -1.67 16 4 C -0.11 -1.83 4.66 -26.74 -0.12 -1.96 16 5 C -0.02 -0.32 4.82 -27.88 -0.13 -0.45 16 6 C -0.08 -1.95 6.19 -80.90 -0.50 -2.45 16 7 C 0.15 4.15 6.72 -85.02 -0.57 3.58 16 8 C -0.45 -12.61 9.11 -37.78 -0.34 -12.95 16 9 H 0.08 2.05 7.30 -52.48 -0.38 1.67 16 10 C 0.07 2.01 5.49 -17.35 -0.10 1.91 16 11 N -0.78 -22.90 11.92 55.54 0.66 -22.23 16 12 Si 0.90 20.23 29.56 -169.99 -5.02 15.21 16 13 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 N -0.23 -6.83 10.55 32.05 0.34 -6.49 16 17 N -0.15 -3.98 13.74 60.35 0.83 -3.15 16 18 N -0.37 -8.42 3.59 -56.17 -0.20 -8.62 16 19 C 0.15 2.39 5.82 -4.04 -0.02 2.37 16 20 C 0.09 1.20 3.82 -26.73 -0.10 1.09 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 22 C -0.18 -1.76 9.53 37.16 0.35 -1.40 16 23 O -0.55 -8.04 11.48 -35.23 -0.40 -8.45 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.87 6.57 -51.93 -0.34 0.53 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.07 1.48 5.98 -51.93 -0.31 1.17 16 34 H 0.06 1.17 6.19 -51.93 -0.32 0.85 16 35 H 0.27 7.29 8.30 -40.82 -0.34 6.95 16 36 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.09 1.28 7.79 -51.93 -0.40 0.88 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.37 3.76 9.08 45.56 0.41 4.17 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -33.80 336.45 -5.84 -39.64 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.98 Total: 3.93 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -1.13 Total: -14.91 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 1.63 Total: -40.50 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.40 Total: -8.45 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.80 -5.84 -39.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.561 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds