Wall clock time and date at job start Mon Mar 30 2020 04:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47085 * 2 1 4 4 C 1.52992 * 109.47705 * 120.00526 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.39011 * 126.77452 * 270.02684 * 6 5 4 8 8 C 1.41495 * 126.01819 * 359.97438 * 7 6 5 9 9 H 1.08003 * 120.00035 * 359.97438 * 8 7 6 10 10 C 1.39743 * 119.99851 * 180.02562 * 8 7 6 11 11 N 1.30981 * 119.99807 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99849 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47338 * 59.99642 * 12 10 8 14 14 H 1.48494 * 109.46974 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47190 * 299.99546 * 12 10 8 16 16 N 1.34842 * 107.95903 * 179.97438 * 7 6 5 17 17 N 1.28664 * 109.63641 * 0.02562 * 16 7 6 18 18 N 1.35022 * 126.76761 * 89.70739 * 6 5 4 19 19 C 1.46501 * 126.49474 * 359.97438 * 18 6 5 20 20 C 1.53005 * 109.47076 * 89.99792 * 19 18 6 21 21 H 1.08995 * 109.46952 * 54.99623 * 20 19 18 22 22 C 1.52996 * 109.47052 * 174.99887 * 20 19 18 23 23 O 1.42898 * 109.46978 * 294.99975 * 20 19 18 24 24 H 1.09000 * 109.46929 * 299.99211 * 1 2 3 25 25 H 1.09000 * 109.47812 * 59.99192 * 1 2 3 26 26 H 1.09001 * 109.46974 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46661 * 240.00336 * 2 1 3 28 28 H 1.09000 * 109.46593 * 60.00583 * 3 2 1 29 29 H 1.08998 * 109.46891 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47334 * 300.00556 * 3 2 1 31 31 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 32 32 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 0.96999 * 119.99753 * 180.02562 * 11 10 8 36 36 H 1.08994 * 109.46943 * 209.99523 * 19 18 6 37 37 H 1.08993 * 109.47111 * 329.99762 * 19 18 6 38 38 H 1.09000 * 109.47062 * 179.97438 * 22 20 19 39 39 H 1.09001 * 109.47054 * 300.00342 * 22 20 19 40 40 H 1.09003 * 109.47038 * 59.99578 * 22 20 19 41 41 H 0.96701 * 114.00380 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1877 6 6 4.0674 -1.5410 2.4184 7 6 4.4359 -0.9561 3.6244 8 6 4.4073 0.4270 3.9214 9 1 4.0765 1.1331 3.1741 10 6 4.8081 0.8795 5.1814 11 7 5.2097 0.0232 6.0875 12 14 4.7710 2.7055 5.5732 13 1 3.3825 3.2135 5.4345 14 1 5.2403 2.9227 6.9652 15 1 5.6603 3.4320 4.6316 16 7 4.8253 -1.9390 4.4613 17 7 4.7265 -3.0765 3.8681 18 7 4.2428 -2.8713 2.5691 19 6 3.9796 -3.9042 1.5640 20 6 5.2419 -4.1398 0.7322 21 1 6.0738 -4.3796 1.3943 22 6 5.0067 -5.3032 -0.2332 23 8 5.5498 -2.9588 -0.0111 24 1 -0.3633 0.5137 0.8901 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.6767 1.9562 0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6055 -1.7199 1.2950 32 1 1.7517 -0.1585 2.1368 33 1 3.9995 0.1675 1.1418 34 1 3.8532 -1.3940 0.2999 35 1 5.4876 0.3373 6.9621 36 1 3.6942 -4.8310 2.0617 37 1 3.1699 -3.5781 0.9113 38 1 5.9059 -5.4708 -0.8261 39 1 4.7718 -6.2040 0.3338 40 1 4.1747 -5.0634 -0.8953 41 1 6.3401 -3.0363 -0.5630 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:18 Heat of formation + Delta-G solvation = -16.408038 kcal Electronic energy + Delta-G solvation = -21273.506416 eV Core-core repulsion = 18188.383981 eV Total energy + Delta-G solvation = -3085.122434 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.87239 -38.59949 -37.72441 -35.47708 -34.51855 -33.04895 -31.65747 -29.87389 -27.93078 -27.77641 -26.56863 -24.58648 -22.93606 -22.03131 -20.74442 -20.56571 -19.02699 -18.34590 -16.94718 -16.76645 -16.36455 -15.96864 -15.36239 -15.28610 -14.86322 -14.77502 -14.38051 -13.98850 -13.69986 -13.56255 -13.34702 -13.02629 -13.00214 -12.82766 -12.78271 -12.58985 -12.57300 -12.17079 -12.04689 -12.00298 -11.73589 -11.50388 -11.35674 -11.31963 -11.11167 -10.98522 -10.67596 -10.15158 -9.28127 -8.25885 -6.12630 1.06108 1.42844 1.46278 1.55476 2.03209 2.35697 2.37539 3.22635 3.56550 3.84102 3.91362 3.97428 4.07896 4.12142 4.18043 4.29735 4.45745 4.48742 4.60271 4.75017 4.85122 4.89833 4.91812 4.93369 4.98947 5.00751 5.10635 5.17892 5.19779 5.26193 5.32651 5.35747 5.44260 5.54721 5.61578 5.62027 5.78944 6.44200 6.49962 6.86935 6.95118 7.14409 8.34414 8.74161 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.007784 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.044645 B = 3596.254872 C = 5189.656096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.150 4.150 4 C -0.099 4.099 5 C -0.010 4.010 6 C -0.051 4.051 7 C 0.098 3.902 8 C -0.478 4.478 9 H 0.087 0.913 10 C 0.020 3.980 11 N -0.832 5.832 12 Si 0.981 3.019 13 H -0.259 1.259 14 H -0.279 1.279 15 H -0.259 1.259 16 N -0.283 5.283 17 N -0.186 5.186 18 N -0.355 5.355 19 C 0.126 3.874 20 C 0.093 3.907 21 H 0.036 0.964 22 C -0.168 4.168 23 O -0.574 6.574 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.270 0.730 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.270 -3.640 -17.158 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.207 4.207 4 C -0.138 4.138 5 C -0.050 4.050 6 C -0.188 4.188 7 C -0.036 4.036 8 C -0.515 4.515 9 H 0.105 0.895 10 C -0.193 4.193 11 N -0.461 5.461 12 Si 0.802 3.198 13 H -0.183 1.183 14 H -0.204 1.204 15 H -0.183 1.183 16 N -0.151 5.151 17 N -0.160 5.160 18 N -0.148 5.148 19 C 0.004 3.996 20 C 0.032 3.968 21 H 0.054 0.946 22 C -0.226 4.226 23 O -0.382 6.382 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -5.243 -4.618 -15.569 17.065 hybrid contribution 0.513 0.950 -0.057 1.082 sum -4.730 -3.668 -15.627 16.734 Atomic orbital electron populations 1.21816 0.94500 1.01851 1.01904 1.21070 0.96149 0.96253 0.97127 1.21893 1.01102 0.95981 1.01700 1.21553 0.94231 0.99739 0.98246 1.19821 0.95052 0.98748 0.91367 1.22170 1.12919 0.84128 0.99558 1.19568 1.00471 0.94855 0.88671 1.18799 1.43499 0.89840 0.99339 0.89456 1.26714 0.93043 1.03943 0.95609 1.70185 1.34094 1.37242 1.04620 0.85289 0.79680 0.77184 0.77622 1.18304 1.20390 1.18290 1.74984 1.18466 0.96040 1.25607 1.81328 1.24715 1.19884 0.90072 1.49833 1.47021 1.06000 1.11969 1.22056 0.98584 0.90964 0.87979 1.22092 0.95463 0.86467 0.92734 0.94552 1.22340 1.04029 0.96868 0.99316 1.86550 1.50976 1.37470 1.63203 0.93645 0.91194 0.92516 0.90100 0.93752 0.93029 0.91196 0.93020 0.94178 0.91359 0.89503 0.91996 0.86895 0.87448 0.90252 0.90379 0.90501 0.75889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.19 71.98 0.66 -2.35 16 2 C -0.09 -2.14 2.92 -10.80 -0.03 -2.17 16 3 C -0.15 -3.69 8.95 71.98 0.64 -3.05 16 4 C -0.10 -3.23 4.66 30.59 0.14 -3.09 16 5 C -0.01 -0.39 4.82 29.85 0.14 -0.24 16 6 C -0.05 -2.48 6.19 42.25 0.26 -2.21 16 7 C 0.10 5.78 6.72 39.67 0.27 6.04 16 8 C -0.48 -27.75 9.11 23.44 0.21 -27.54 16 9 H 0.09 4.68 7.30 -2.91 -0.02 4.66 16 10 C 0.02 1.12 5.49 85.18 0.47 1.59 16 11 N -0.83 -51.23 11.92 21.80 0.26 -50.97 16 12 Si 0.98 42.63 29.56 68.60 2.03 44.66 16 13 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 14 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 15 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 16 N -0.28 -17.83 10.55 -52.52 -0.55 -18.39 16 17 N -0.19 -10.34 13.74 37.02 0.51 -9.83 16 18 N -0.36 -16.07 3.59 -331.64 -1.19 -17.26 16 19 C 0.13 3.89 5.82 86.38 0.50 4.39 16 20 C 0.09 2.38 3.82 30.59 0.12 2.50 16 21 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 22 C -0.17 -2.61 9.53 71.98 0.69 -1.92 16 23 O -0.57 -15.28 11.48 -148.98 -1.71 -16.99 16 24 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.36 6.57 -2.39 -0.02 1.35 16 30 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 2.67 5.98 -2.39 -0.01 2.66 16 34 H 0.09 2.88 6.19 -2.39 -0.01 2.87 16 35 H 0.27 15.38 8.30 -92.71 -0.77 14.61 16 36 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.11 2.88 7.79 -2.39 -0.02 2.86 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.39 6.89 9.08 -74.06 -0.67 6.22 16 Total: -1.00 -78.50 336.45 3.76 -74.74 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.34 Total: 22.09 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 4.08 Total: -28.05 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -0.98 Total: -96.45 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -1.71 Total: -16.99 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -78.50 3.76 -74.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.332 kcal (2) G-P(sol) polarization free energy of solvation -78.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds