Wall clock time and date at job start Mon Mar 30 2020 04:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46810 * 2 1 4 4 C 1.53010 * 109.46907 * 119.99128 * 2 1 3 5 5 C 1.53003 * 109.46549 * 65.00423 * 4 2 1 6 6 C 1.50705 * 109.46965 * 179.97438 * 5 4 2 7 7 C 1.39006 * 126.77194 * 269.97783 * 6 5 4 8 8 C 1.41501 * 126.02340 * 0.03674 * 7 6 5 9 9 H 1.08001 * 119.99406 * 5.41603 * 8 7 6 10 10 C 1.39738 * 120.00012 * 185.69379 * 8 7 6 11 11 N 1.30981 * 120.00042 * 353.62555 * 10 8 7 12 12 Si 1.86801 * 119.99664 * 173.62813 * 10 8 7 13 13 H 1.48505 * 109.46821 * 94.98372 * 12 10 8 14 14 H 1.48507 * 109.46819 * 214.97840 * 12 10 8 15 15 H 1.48495 * 109.47165 * 334.97907 * 12 10 8 16 16 N 1.34839 * 107.95984 * 180.29642 * 7 6 5 17 17 N 1.28673 * 109.63307 * 359.54913 * 16 7 6 18 18 N 1.35015 * 126.76687 * 90.01935 * 6 5 4 19 19 C 1.46498 * 126.49597 * 359.96268 * 18 6 5 20 20 H 1.08992 * 109.47270 * 0.02562 * 19 18 6 21 21 C 1.52998 * 109.46665 * 120.00351 * 19 18 6 22 22 C 1.53005 * 109.47150 * 240.00090 * 19 18 6 23 23 O 1.42896 * 109.47146 * 175.00373 * 22 19 18 24 24 H 1.09005 * 109.47165 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47647 * 300.00557 * 1 2 3 26 26 H 1.09006 * 109.46969 * 60.00826 * 1 2 3 27 27 H 1.08996 * 109.47647 * 239.99443 * 2 1 3 28 28 H 1.09005 * 109.46512 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.46630 * 299.99332 * 3 2 1 30 30 H 1.09000 * 109.47084 * 59.99971 * 3 2 1 31 31 H 1.09000 * 109.47361 * 305.00650 * 4 2 1 32 32 H 1.08995 * 109.47048 * 185.00215 * 4 2 1 33 33 H 1.09000 * 109.47104 * 60.00069 * 5 4 2 34 34 H 1.08991 * 109.47190 * 300.00169 * 5 4 2 35 35 H 0.97003 * 119.99804 * 180.02562 * 11 10 8 36 36 H 1.09000 * 109.46902 * 179.97438 * 21 19 18 37 37 H 1.09000 * 109.47380 * 299.99781 * 21 19 18 38 38 H 1.08999 * 109.47720 * 60.00201 * 21 19 18 39 39 H 1.09007 * 109.46840 * 295.00112 * 22 19 18 40 40 H 1.09000 * 109.47180 * 55.00224 * 22 19 18 41 41 H 0.96699 * 114.00162 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6352 -2.1954 1.1882 6 6 2.1380 -2.9058 2.4185 7 6 3.3667 -3.5378 2.5707 8 6 4.3819 -3.6308 1.5894 9 1 4.2726 -3.1118 0.6486 10 6 5.5232 -4.3987 1.8354 11 7 5.7128 -4.9300 3.0175 12 14 6.7784 -4.6674 0.4783 13 1 7.8623 -3.6596 0.6000 14 1 7.3543 -6.0309 0.5997 15 1 6.1164 -4.5255 -0.8434 16 7 3.4185 -4.0516 3.8163 17 7 2.3279 -3.7787 4.4422 18 7 1.4835 -3.0547 3.5900 19 6 0.1443 -2.5541 3.9096 20 1 -0.2633 -2.0296 3.0455 21 6 -0.7671 -3.7293 4.2689 22 6 0.2291 -1.5929 5.0970 23 8 -1.0562 -1.0155 5.3351 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6053 -0.2616 2.1371 32 1 3.1262 -0.6442 1.2954 33 1 2.0699 -2.6549 0.3005 34 1 0.5490 -2.2723 1.1422 35 1 6.5052 -5.4628 3.1883 36 1 -1.7634 -3.3568 4.5071 37 1 -0.8275 -4.4141 3.4230 38 1 -0.3597 -4.2542 5.1329 39 1 0.5523 -2.1384 5.9836 40 1 0.9467 -0.8031 4.8746 41 1 -1.0770 -0.3938 6.0755 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:13 Heat of formation + Delta-G solvation = 8.494156 kcal Electronic energy + Delta-G solvation = -21208.522620 eV Core-core repulsion = 18124.480025 eV Total energy + Delta-G solvation = -3084.042594 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.10704 -37.21228 -36.58875 -34.30923 -33.08582 -31.72169 -29.29851 -28.19041 -27.01074 -26.21418 -24.95458 -23.21328 -22.29193 -19.80148 -19.66714 -18.84191 -17.48692 -16.68747 -15.43357 -15.02349 -14.90331 -14.71861 -14.59482 -13.94184 -13.63504 -13.23209 -13.18075 -12.77557 -12.46767 -12.17245 -12.00929 -11.97382 -11.57528 -11.50289 -11.23807 -11.13990 -10.93690 -10.79993 -10.73005 -10.49391 -10.31403 -10.21994 -10.07417 -9.94235 -9.64340 -9.25121 -8.83677 -8.43103 -7.36574 -6.35148 -4.13212 2.80933 3.16499 3.21982 3.25231 3.42755 4.15341 4.32958 4.47562 4.97790 5.07289 5.14855 5.19317 5.22187 5.36582 5.54935 5.67224 5.71200 5.73306 5.75394 5.80146 5.93688 5.94730 6.00452 6.06984 6.11944 6.14304 6.19795 6.38519 6.40718 6.48511 6.50931 6.69186 6.84832 6.97637 7.17214 7.45468 7.55151 7.57595 8.18294 8.45787 8.85623 9.11626 10.22914 10.62031 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.007367 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.786174 B = 3799.905563 C = 5413.470746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.107 4.107 5 C -0.015 4.015 6 C -0.109 4.109 7 C 0.154 3.846 8 C -0.450 4.450 9 H 0.081 0.919 10 C 0.074 3.926 11 N -0.777 5.777 12 Si 0.903 3.097 13 H -0.274 1.274 14 H -0.280 1.280 15 H -0.264 1.264 16 N -0.228 5.228 17 N -0.133 5.133 18 N -0.372 5.372 19 C 0.168 3.832 20 H 0.095 0.905 21 C -0.152 4.152 22 C 0.072 3.928 23 O -0.572 6.572 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.271 0.729 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.835 9.051 -2.549 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.203 4.203 4 C -0.145 4.145 5 C -0.055 4.055 6 C -0.240 4.240 7 C 0.024 3.976 8 C -0.486 4.486 9 H 0.099 0.901 10 C -0.145 4.145 11 N -0.403 5.403 12 Si 0.729 3.271 13 H -0.200 1.200 14 H -0.205 1.205 15 H -0.188 1.188 16 N -0.100 5.100 17 N -0.109 5.109 18 N -0.169 5.169 19 C 0.063 3.937 20 H 0.113 0.887 21 C -0.210 4.210 22 C -0.007 4.007 23 O -0.377 6.377 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -9.694 7.897 -1.477 12.590 hybrid contribution 0.635 0.681 -1.035 1.392 sum -9.059 8.579 -2.511 12.726 Atomic orbital electron populations 1.21887 0.95816 1.01726 1.01022 1.21157 0.95415 0.95911 0.99207 1.21826 1.01117 0.96311 1.01003 1.21647 1.01752 0.94918 0.96167 1.19666 0.98370 0.93359 0.94086 1.21430 0.96804 1.15507 0.90280 1.18968 0.91806 0.95456 0.91362 1.18509 1.00762 1.28822 1.00500 0.90124 1.25767 0.98367 0.94637 0.95739 1.70023 1.25059 1.24827 1.20432 0.86388 0.80716 0.78068 0.81945 1.19955 1.20507 1.18846 1.75097 1.10730 1.17870 1.06266 1.81459 0.98345 1.14424 1.16638 1.49427 1.13262 1.42931 1.11320 1.20645 0.80775 0.94506 0.97736 0.88731 1.22038 0.98978 0.97454 1.02533 1.22426 0.84291 0.95731 0.98221 1.86366 1.31469 1.63760 1.56109 0.92438 0.93039 0.93337 0.91153 0.92643 0.93259 0.93094 0.93139 0.91167 0.90458 0.93062 0.91841 0.91001 0.92368 0.91555 0.92303 0.93344 0.77298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.95 37.16 0.33 -1.38 16 2 C -0.10 -1.28 2.92 -90.61 -0.26 -1.55 16 3 C -0.15 -1.70 9.19 37.16 0.34 -1.36 16 4 C -0.11 -1.72 4.67 -26.72 -0.12 -1.85 16 5 C -0.02 -0.28 4.85 -27.88 -0.14 -0.41 16 6 C -0.11 -2.51 6.37 -80.90 -0.51 -3.03 16 7 C 0.15 4.22 6.72 -85.02 -0.57 3.65 16 8 C -0.45 -12.19 9.08 -37.78 -0.34 -12.54 16 9 H 0.08 2.03 7.38 -52.49 -0.39 1.64 16 10 C 0.07 1.97 5.48 -17.35 -0.10 1.87 16 11 N -0.78 -22.11 11.95 55.54 0.66 -21.45 16 12 Si 0.90 19.65 29.56 -169.99 -5.03 14.62 16 13 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 16 N -0.23 -6.61 10.58 32.05 0.34 -6.27 16 17 N -0.13 -3.44 13.62 60.35 0.82 -2.62 16 18 N -0.37 -8.15 3.29 -49.74 -0.16 -8.32 16 19 C 0.17 2.89 3.39 -67.93 -0.23 2.66 16 20 H 0.09 1.52 6.80 -51.93 -0.35 1.17 16 21 C -0.15 -2.38 9.36 37.16 0.35 -2.04 16 22 C 0.07 1.10 6.70 37.16 0.25 1.34 16 23 O -0.57 -7.16 13.19 -35.23 -0.46 -7.63 16 24 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.44 7.63 -51.93 -0.40 1.04 16 34 H 0.05 0.83 5.62 -51.93 -0.29 0.54 16 35 H 0.27 7.09 8.30 -40.82 -0.34 6.75 16 36 H 0.07 0.97 7.82 -51.93 -0.41 0.56 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.38 2.95 9.12 45.56 0.42 3.36 16 LS Contribution 338.13 15.07 5.10 5.10 Total: -1.00 -31.84 338.13 -5.71 -37.55 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.97 Total: 3.63 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.01 Total: -14.62 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 1.66 Total: -38.65 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.46 Total: -7.63 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.84 -5.71 -37.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.047 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds