Wall clock time and date at job start Mon Mar 30 2020 04:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46785 * 2 1 4 4 C 1.53000 * 109.47101 * 120.00059 * 2 1 3 5 5 C 1.52996 * 109.47557 * 64.99823 * 4 2 1 6 6 C 1.50693 * 109.47358 * 179.97438 * 5 4 2 7 7 C 1.39011 * 126.77414 * 270.02907 * 6 5 4 8 8 C 1.41498 * 126.02133 * 0.02562 * 7 6 5 9 9 H 1.07997 * 119.99489 * 5.47844 * 8 7 6 10 10 C 1.39738 * 120.00083 * 185.47777 * 8 7 6 11 11 N 1.30986 * 120.00107 * 353.66669 * 10 8 7 12 12 Si 1.86794 * 119.99883 * 173.94620 * 10 8 7 13 13 H 1.48505 * 109.47296 * 94.97889 * 12 10 8 14 14 H 1.48503 * 109.46928 * 214.97655 * 12 10 8 15 15 H 1.48500 * 109.47239 * 334.97604 * 12 10 8 16 16 N 1.34842 * 107.96050 * 179.75896 * 7 6 5 17 17 N 1.28670 * 109.63256 * 0.24076 * 16 7 6 18 18 N 1.35022 * 126.77186 * 90.20346 * 6 5 4 19 19 C 1.46498 * 126.49117 * 359.96735 * 18 6 5 20 20 H 1.09005 * 109.47324 * 0.29381 * 19 18 6 21 21 C 1.53003 * 109.47451 * 240.29261 * 19 18 6 22 22 C 1.53001 * 109.47284 * 120.29323 * 19 18 6 23 23 O 1.42901 * 109.47442 * 184.99931 * 22 19 18 24 24 H 1.08997 * 109.46972 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46876 * 299.99684 * 1 2 3 26 26 H 1.08997 * 109.46967 * 59.99954 * 1 2 3 27 27 H 1.08996 * 109.46847 * 239.99984 * 2 1 3 28 28 H 1.08999 * 109.46888 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47405 * 299.99777 * 3 2 1 30 30 H 1.09007 * 109.47220 * 59.99974 * 3 2 1 31 31 H 1.09010 * 109.46677 * 304.99764 * 4 2 1 32 32 H 1.08998 * 109.47188 * 185.00835 * 4 2 1 33 33 H 1.09002 * 109.46634 * 59.99935 * 5 4 2 34 34 H 1.09000 * 109.46966 * 300.00659 * 5 4 2 35 35 H 0.96992 * 120.00051 * 180.02562 * 11 10 8 36 36 H 1.08990 * 109.47300 * 180.02562 * 21 19 18 37 37 H 1.08998 * 109.46741 * 300.00677 * 21 19 18 38 38 H 1.09001 * 109.46271 * 59.99796 * 21 19 18 39 39 H 1.08997 * 109.47134 * 304.99819 * 22 19 18 40 40 H 1.09007 * 109.47157 * 64.99965 * 22 19 18 41 41 H 0.96695 * 114.00235 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1954 1.1881 6 6 2.1382 -2.9059 2.4182 7 6 3.3673 -3.5371 2.5706 8 6 4.3828 -3.6292 1.5896 9 1 4.2738 -3.1094 0.6493 10 6 5.5266 -4.3927 1.8375 11 7 5.7176 -4.9211 3.0207 12 14 6.7870 -4.6534 0.4837 13 1 7.8662 -3.6411 0.6106 14 1 7.3685 -6.0145 0.6042 15 1 6.1285 -4.5117 -0.8397 16 7 3.4238 -4.0410 3.8201 17 7 2.3300 -3.7753 4.4433 18 7 1.4825 -3.0579 3.5887 19 6 0.1415 -2.5612 3.9069 20 1 -0.2683 -2.0409 3.0411 21 6 0.2229 -1.5954 5.0908 22 6 -0.7655 -3.7385 4.2707 23 8 -2.1005 -3.2683 4.4676 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6054 -0.2616 2.1370 32 1 3.1263 -0.6442 1.2952 33 1 2.0700 -2.6549 0.3003 34 1 0.5490 -2.2723 1.1421 35 1 6.5117 -5.4508 3.1929 36 1 -0.7748 -1.2262 5.3278 37 1 0.6327 -2.1157 5.9565 38 1 0.8691 -0.7567 4.8315 39 1 -0.7534 -4.4697 3.4625 40 1 -0.4054 -4.2046 5.1879 41 1 -2.7314 -3.9625 4.7019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545563.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:17 Heat of formation + Delta-G solvation = 8.444340 kcal Electronic energy + Delta-G solvation = -21172.844265 eV Core-core repulsion = 18088.799511 eV Total energy + Delta-G solvation = -3084.044755 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.10694 -37.21310 -36.58341 -34.30825 -33.08525 -31.71669 -29.30348 -28.19159 -27.00590 -26.19676 -24.96409 -23.21406 -22.28894 -19.80220 -19.65817 -18.84046 -17.47736 -16.68913 -15.46924 -15.00462 -14.92010 -14.65338 -14.59909 -13.98122 -13.54741 -13.42182 -13.03245 -12.80032 -12.45360 -12.17445 -12.06698 -11.89760 -11.58441 -11.49389 -11.28621 -11.09238 -10.95477 -10.81053 -10.68888 -10.48897 -10.30591 -10.21732 -10.07024 -9.95549 -9.64728 -9.24387 -8.83630 -8.43111 -7.36545 -6.35115 -4.13229 2.81119 3.16341 3.21947 3.25289 3.42176 4.15281 4.33133 4.48050 4.98210 5.06825 5.15411 5.19650 5.23024 5.36568 5.54927 5.67124 5.71911 5.73909 5.75440 5.81354 5.93326 5.94885 6.01523 6.07767 6.12518 6.14081 6.21055 6.37984 6.41525 6.49415 6.51018 6.70080 6.86021 6.97871 7.17244 7.45448 7.55157 7.57570 8.18259 8.45844 8.85637 9.11645 10.22950 10.62077 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.007463 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.453096 B = 3751.185717 C = 5443.959882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.107 4.107 5 C -0.015 4.015 6 C -0.109 4.109 7 C 0.154 3.846 8 C -0.450 4.450 9 H 0.081 0.919 10 C 0.074 3.926 11 N -0.777 5.777 12 Si 0.904 3.096 13 H -0.274 1.274 14 H -0.280 1.280 15 H -0.264 1.264 16 N -0.228 5.228 17 N -0.133 5.133 18 N -0.372 5.372 19 C 0.168 3.832 20 H 0.095 0.905 21 C -0.151 4.151 22 C 0.071 3.929 23 O -0.573 6.573 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.271 0.729 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.925 6.714 -3.439 13.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.203 4.203 4 C -0.145 4.145 5 C -0.055 4.055 6 C -0.240 4.240 7 C 0.024 3.976 8 C -0.486 4.486 9 H 0.099 0.901 10 C -0.145 4.145 11 N -0.404 5.404 12 Si 0.729 3.271 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.189 1.189 16 N -0.100 5.100 17 N -0.109 5.109 18 N -0.169 5.169 19 C 0.063 3.937 20 H 0.113 0.887 21 C -0.209 4.209 22 C -0.008 4.008 23 O -0.377 6.377 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -10.337 6.520 -1.997 12.384 hybrid contribution 0.186 -0.291 -1.409 1.451 sum -10.151 6.229 -3.407 12.387 Atomic orbital electron populations 1.21888 0.95837 1.01704 1.01020 1.21156 0.95395 0.95928 0.99210 1.21826 1.01130 0.96297 1.01012 1.21647 1.01792 0.94870 0.96204 1.19661 0.98313 0.93429 0.94057 1.21432 0.96993 1.15367 0.90219 1.18970 0.91883 0.95483 0.91259 1.18509 1.00663 1.28910 1.00510 0.90122 1.25767 0.98362 0.94662 0.95722 1.70023 1.25043 1.24977 1.20316 0.86386 0.80752 0.78061 0.81912 1.19938 1.20519 1.18857 1.75099 1.10749 1.17931 1.06186 1.81456 0.98194 1.14664 1.16555 1.49426 1.12693 1.43504 1.11316 1.20645 0.79868 0.93606 0.99538 0.88730 1.22029 1.02093 0.98921 0.97868 1.22436 0.81928 0.95757 1.00640 1.86365 1.18974 1.39160 1.93230 0.92459 0.93039 0.93341 0.91183 0.92638 0.93275 0.93058 0.93008 0.91156 0.90486 0.93119 0.91844 0.91023 0.91574 0.92389 0.93314 0.92270 0.77276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.95 37.16 0.33 -1.38 16 2 C -0.10 -1.28 2.92 -90.62 -0.26 -1.55 16 3 C -0.15 -1.71 9.19 37.16 0.34 -1.37 16 4 C -0.11 -1.74 4.66 -26.73 -0.12 -1.86 16 5 C -0.01 -0.27 4.86 -27.89 -0.14 -0.41 16 6 C -0.11 -2.51 6.37 -80.91 -0.52 -3.02 16 7 C 0.15 4.22 6.71 -85.02 -0.57 3.65 16 8 C -0.45 -12.19 9.08 -37.78 -0.34 -12.54 16 9 H 0.08 2.03 7.39 -52.49 -0.39 1.64 16 10 C 0.07 1.96 5.48 -17.35 -0.10 1.87 16 11 N -0.78 -22.11 11.95 55.54 0.66 -21.45 16 12 Si 0.90 19.64 29.56 -169.99 -5.03 14.62 16 13 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 16 N -0.23 -6.61 10.58 32.05 0.34 -6.27 16 17 N -0.13 -3.44 13.62 60.35 0.82 -2.62 16 18 N -0.37 -8.15 3.29 -49.74 -0.16 -8.31 16 19 C 0.17 2.89 3.39 -67.93 -0.23 2.65 16 20 H 0.09 1.52 6.79 -51.93 -0.35 1.17 16 21 C -0.15 -2.37 9.36 37.16 0.35 -2.02 16 22 C 0.07 1.08 6.70 37.16 0.25 1.33 16 23 O -0.57 -7.17 13.19 -35.23 -0.46 -7.64 16 24 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.43 7.63 -51.93 -0.40 1.03 16 34 H 0.05 0.82 5.61 -51.93 -0.29 0.53 16 35 H 0.27 7.09 8.30 -40.82 -0.34 6.75 16 36 H 0.07 0.97 7.82 -51.93 -0.41 0.56 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 41 H 0.38 2.94 9.12 45.56 0.42 3.35 16 LS Contribution 338.12 15.07 5.10 5.10 Total: -1.00 -31.85 338.12 -5.71 -37.56 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.97 Total: 3.65 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -1.01 Total: -14.65 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 1.66 Total: -38.64 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.46 Total: -7.64 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.85 -5.71 -37.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545563.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.006 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds