Wall clock time and date at job start Mon Mar 30 2020 04:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46785 * 2 1 4 4 C 1.53000 * 109.47101 * 120.00059 * 2 1 3 5 5 C 1.52996 * 109.47557 * 64.99823 * 4 2 1 6 6 C 1.50693 * 109.47358 * 179.97438 * 5 4 2 7 7 C 1.39011 * 126.77414 * 270.02907 * 6 5 4 8 8 C 1.41498 * 126.02133 * 0.02562 * 7 6 5 9 9 H 1.07997 * 119.99489 * 5.47844 * 8 7 6 10 10 C 1.39738 * 120.00083 * 185.47777 * 8 7 6 11 11 N 1.30986 * 120.00107 * 353.66669 * 10 8 7 12 12 Si 1.86794 * 119.99883 * 173.94620 * 10 8 7 13 13 H 1.48505 * 109.47296 * 94.97889 * 12 10 8 14 14 H 1.48503 * 109.46928 * 214.97655 * 12 10 8 15 15 H 1.48500 * 109.47239 * 334.97604 * 12 10 8 16 16 N 1.34842 * 107.96050 * 179.75896 * 7 6 5 17 17 N 1.28670 * 109.63256 * 0.24076 * 16 7 6 18 18 N 1.35022 * 126.77186 * 90.20346 * 6 5 4 19 19 C 1.46498 * 126.49117 * 359.96735 * 18 6 5 20 20 H 1.09005 * 109.47324 * 0.29381 * 19 18 6 21 21 C 1.53003 * 109.47451 * 240.29261 * 19 18 6 22 22 C 1.53001 * 109.47284 * 120.29323 * 19 18 6 23 23 O 1.42901 * 109.47442 * 184.99931 * 22 19 18 24 24 H 1.08997 * 109.46972 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46876 * 299.99684 * 1 2 3 26 26 H 1.08997 * 109.46967 * 59.99954 * 1 2 3 27 27 H 1.08996 * 109.46847 * 239.99984 * 2 1 3 28 28 H 1.08999 * 109.46888 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47405 * 299.99777 * 3 2 1 30 30 H 1.09007 * 109.47220 * 59.99974 * 3 2 1 31 31 H 1.09010 * 109.46677 * 304.99764 * 4 2 1 32 32 H 1.08998 * 109.47188 * 185.00835 * 4 2 1 33 33 H 1.09002 * 109.46634 * 59.99935 * 5 4 2 34 34 H 1.09000 * 109.46966 * 300.00659 * 5 4 2 35 35 H 0.96992 * 120.00051 * 180.02562 * 11 10 8 36 36 H 1.08990 * 109.47300 * 180.02562 * 21 19 18 37 37 H 1.08998 * 109.46741 * 300.00677 * 21 19 18 38 38 H 1.09001 * 109.46271 * 59.99796 * 21 19 18 39 39 H 1.08997 * 109.47134 * 304.99819 * 22 19 18 40 40 H 1.09007 * 109.47157 * 64.99965 * 22 19 18 41 41 H 0.96695 * 114.00235 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1954 1.1881 6 6 2.1382 -2.9059 2.4182 7 6 3.3673 -3.5371 2.5706 8 6 4.3828 -3.6292 1.5896 9 1 4.2738 -3.1094 0.6493 10 6 5.5266 -4.3927 1.8375 11 7 5.7176 -4.9211 3.0207 12 14 6.7870 -4.6534 0.4837 13 1 7.8662 -3.6411 0.6106 14 1 7.3685 -6.0145 0.6042 15 1 6.1285 -4.5117 -0.8397 16 7 3.4238 -4.0410 3.8201 17 7 2.3300 -3.7753 4.4433 18 7 1.4825 -3.0579 3.5887 19 6 0.1415 -2.5612 3.9069 20 1 -0.2683 -2.0409 3.0411 21 6 0.2229 -1.5954 5.0908 22 6 -0.7655 -3.7385 4.2707 23 8 -2.1005 -3.2683 4.4676 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6054 -0.2616 2.1370 32 1 3.1263 -0.6442 1.2952 33 1 2.0700 -2.6549 0.3003 34 1 0.5490 -2.2723 1.1421 35 1 6.5117 -5.4508 3.1929 36 1 -0.7748 -1.2262 5.3278 37 1 0.6327 -2.1157 5.9565 38 1 0.8691 -0.7567 4.8315 39 1 -0.7534 -4.4697 3.4625 40 1 -0.4054 -4.2046 5.1879 41 1 -2.7314 -3.9625 4.7019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545563.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:16 Heat of formation + Delta-G solvation = -13.902323 kcal Electronic energy + Delta-G solvation = -21173.813290 eV Core-core repulsion = 18088.799511 eV Total energy + Delta-G solvation = -3085.013779 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.97959 -38.43601 -37.77455 -35.86436 -34.92043 -33.24844 -31.03411 -29.86077 -27.92354 -27.46659 -26.82427 -24.74405 -23.89775 -21.65918 -20.76921 -20.47429 -18.93885 -18.29114 -16.89808 -16.82423 -16.23358 -16.06661 -16.02311 -15.28181 -14.99130 -14.84390 -14.45181 -14.32162 -13.71709 -13.45739 -13.38357 -13.06600 -13.01424 -12.96270 -12.74574 -12.62166 -12.57630 -12.20635 -12.06954 -11.99148 -11.71430 -11.52703 -11.39389 -11.34316 -11.13324 -11.06003 -10.74446 -10.27722 -9.32993 -8.29891 -6.16703 0.97925 1.43714 1.44361 1.58411 1.81271 2.33339 2.35303 3.24727 3.52397 3.66610 3.86432 3.98000 3.99801 4.08923 4.14799 4.34579 4.35201 4.46623 4.49155 4.70954 4.74776 4.79005 4.81192 4.88126 4.92550 4.96293 5.07755 5.10686 5.11766 5.22567 5.32108 5.32589 5.42271 5.53920 5.54093 5.60293 5.70832 6.40780 6.44482 6.75609 6.90391 7.11049 8.28917 8.70157 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.007463 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.453096 B = 3751.185717 C = 5443.959882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.098 4.098 5 C -0.014 4.014 6 C -0.079 4.079 7 C 0.108 3.892 8 C -0.477 4.477 9 H 0.091 0.909 10 C 0.021 3.979 11 N -0.828 5.828 12 Si 0.981 3.019 13 H -0.268 1.268 14 H -0.278 1.278 15 H -0.251 1.251 16 N -0.281 5.281 17 N -0.165 5.165 18 N -0.354 5.354 19 C 0.152 3.848 20 H 0.115 0.885 21 C -0.143 4.143 22 C 0.086 3.914 23 O -0.569 6.569 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.272 0.728 36 H 0.102 0.898 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.043 0.957 40 H 0.049 0.951 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.137 8.293 -5.351 16.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.136 4.136 5 C -0.053 4.053 6 C -0.213 4.213 7 C -0.024 4.024 8 C -0.514 4.514 9 H 0.109 0.891 10 C -0.192 4.192 11 N -0.457 5.457 12 Si 0.803 3.197 13 H -0.193 1.193 14 H -0.204 1.204 15 H -0.174 1.174 16 N -0.151 5.151 17 N -0.140 5.140 18 N -0.150 5.150 19 C 0.050 3.950 20 H 0.133 0.867 21 C -0.201 4.201 22 C 0.006 3.994 23 O -0.377 6.377 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -12.618 8.096 -3.855 15.480 hybrid contribution 0.598 -0.658 -0.789 1.188 sum -12.021 7.438 -4.643 14.879 Atomic orbital electron populations 1.21871 0.94182 1.01988 1.02176 1.21110 0.96703 0.96240 0.97138 1.21812 1.00650 0.95546 1.02133 1.21532 1.00175 0.93674 0.98239 1.19857 0.99904 0.94126 0.91428 1.22214 0.95575 1.12103 0.91441 1.19537 0.93988 0.97415 0.91498 1.18868 1.01522 1.29948 1.01049 0.89127 1.26726 1.00403 0.93995 0.98079 1.70184 1.26037 1.26644 1.22805 0.85206 0.77741 0.77844 0.78911 1.19346 1.20350 1.17393 1.75049 1.12463 1.20137 1.07406 1.81336 0.98579 1.16856 1.17238 1.49824 1.13807 1.41044 1.10346 1.21165 0.77797 0.94917 1.01152 0.86692 1.21970 1.03635 0.98025 0.96424 1.22051 0.83073 0.94315 0.99930 1.86307 1.17897 1.40307 1.93217 0.92567 0.92675 0.91493 0.91048 0.93501 0.91279 0.92819 0.93058 0.93852 0.90603 0.90208 0.91857 0.87988 0.93104 0.92935 0.93834 0.93301 0.74484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.95 71.98 0.64 -2.15 16 2 C -0.09 -2.18 2.92 -10.79 -0.03 -2.21 16 3 C -0.14 -3.01 9.19 71.98 0.66 -2.35 16 4 C -0.10 -3.03 4.66 30.59 0.14 -2.88 16 5 C -0.01 -0.47 4.86 29.84 0.14 -0.33 16 6 C -0.08 -3.62 6.37 42.25 0.27 -3.35 16 7 C 0.11 6.12 6.71 39.67 0.27 6.39 16 8 C -0.48 -26.64 9.08 23.44 0.21 -26.43 16 9 H 0.09 4.64 7.39 -2.91 -0.02 4.62 16 10 C 0.02 1.18 5.48 85.18 0.47 1.65 16 11 N -0.83 -49.44 11.95 21.80 0.26 -49.18 16 12 Si 0.98 41.23 29.56 68.60 2.03 43.26 16 13 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 14 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 15 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 16 N -0.28 -17.10 10.58 -52.51 -0.56 -17.66 16 17 N -0.17 -8.84 13.62 37.02 0.50 -8.34 16 18 N -0.35 -15.49 3.29 -311.27 -1.02 -16.52 16 19 C 0.15 4.93 3.39 44.99 0.15 5.08 16 20 H 0.12 3.29 6.79 -2.38 -0.02 3.27 16 21 C -0.14 -4.20 9.36 71.98 0.67 -3.53 16 22 C 0.09 2.43 6.70 71.98 0.48 2.91 16 23 O -0.57 -12.26 13.19 -148.98 -1.97 -14.23 16 24 H 0.06 1.09 6.56 -2.39 -0.02 1.08 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 2.71 7.63 -2.39 -0.02 2.69 16 34 H 0.08 2.33 5.61 -2.39 -0.01 2.32 16 35 H 0.27 14.96 8.30 -92.71 -0.77 14.19 16 36 H 0.10 2.41 7.82 -2.39 -0.02 2.39 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.40 4.79 9.12 -74.06 -0.68 4.11 16 Total: -1.00 -72.88 338.12 3.67 -69.21 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.34 Total: 20.65 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 4.09 Total: -27.20 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -0.81 Total: -91.69 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -1.97 Total: -14.23 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -72.88 3.67 -69.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545563.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.305 kcal (2) G-P(sol) polarization free energy of solvation -72.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds