Wall clock time and date at job start Mon Mar 30 2020 04:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46615 * 2 1 4 4 C 1.50700 * 109.47261 * 119.99862 * 2 1 3 5 5 C 1.39017 * 126.76952 * 300.00148 * 4 2 1 6 6 C 1.41493 * 126.02305 * 0.02562 * 5 4 2 7 7 H 1.07996 * 120.00090 * 355.74350 * 6 5 4 8 8 C 1.39741 * 119.99970 * 175.75335 * 6 5 4 9 9 N 1.30985 * 119.99889 * 6.23726 * 8 6 5 10 10 Si 1.86806 * 119.99850 * 186.24579 * 8 6 5 11 11 H 1.48501 * 109.46922 * 94.97144 * 10 8 6 12 12 H 1.48496 * 109.46877 * 214.97149 * 10 8 6 13 13 H 1.48492 * 109.46971 * 334.97063 * 10 8 6 14 14 N 1.34845 * 107.95770 * 179.97438 * 5 4 2 15 15 N 1.28675 * 109.63204 * 359.71611 * 14 5 4 16 16 N 1.35012 * 126.77464 * 120.00280 * 4 2 1 17 17 C 1.46508 * 126.48978 * 0.02562 * 16 4 2 18 18 C 1.53000 * 109.47085 * 90.00035 * 17 16 4 19 19 C 1.52993 * 109.46903 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47304 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.46232 * 54.99947 * 20 19 18 22 22 C 1.53001 * 109.47273 * 174.99876 * 20 19 18 23 23 O 1.42900 * 109.47086 * 295.00623 * 20 19 18 24 24 H 1.09002 * 109.47357 * 299.99822 * 1 2 3 25 25 H 1.08992 * 109.47354 * 60.00394 * 1 2 3 26 26 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47077 * 240.00054 * 2 1 3 28 28 H 1.08995 * 109.46530 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47404 * 299.99960 * 3 2 1 30 30 H 1.09002 * 109.47113 * 60.00028 * 3 2 1 31 31 H 0.96999 * 119.99417 * 180.02562 * 9 8 6 32 32 H 1.09006 * 109.46916 * 329.99940 * 17 16 4 33 33 H 1.09001 * 109.47099 * 209.99921 * 17 16 4 34 34 H 1.08996 * 109.46883 * 59.99871 * 18 17 16 35 35 H 1.09001 * 109.47059 * 299.99911 * 18 17 16 36 36 H 1.09006 * 109.47442 * 60.00244 * 19 18 17 37 37 H 1.08997 * 109.47477 * 300.00296 * 19 18 17 38 38 H 1.09003 * 109.46754 * 180.02562 * 22 20 19 39 39 H 1.08994 * 109.47049 * 299.99895 * 22 20 19 40 40 H 1.09001 * 109.46979 * 60.00526 * 22 20 19 41 41 H 0.96700 * 113.99576 * 299.98950 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.7848 -0.3602 2.5528 6 6 1.0077 0.7378 2.9914 7 1 0.6007 1.4329 2.2720 8 6 0.7671 0.9231 4.3554 9 7 1.3593 0.1543 5.2352 10 14 -0.3994 2.2668 4.9240 11 1 -1.7547 1.6938 5.1239 12 1 0.0902 2.8382 6.2042 13 1 -0.4609 3.3365 3.8959 14 7 2.4149 -1.2521 3.3440 15 7 3.0223 -2.1222 2.6162 16 7 2.8117 -1.8123 1.2661 17 6 3.3329 -2.5485 0.1116 18 6 4.6921 -1.9718 -0.2897 19 6 5.2367 -2.7410 -1.4949 20 6 6.5956 -2.1640 -1.8966 21 1 7.2639 -2.1754 -1.0355 22 6 7.1971 -3.0104 -3.0203 23 8 6.4269 -0.8197 -2.3508 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6765 1.9564 0.8900 31 1 1.1919 0.2827 6.1820 32 1 2.6379 -2.4550 -0.7229 33 1 3.4474 -3.6005 0.3730 34 1 5.3870 -2.0653 0.5448 35 1 4.5776 -0.9198 -0.5511 36 1 4.5418 -2.6479 -2.3296 37 1 5.3512 -3.7929 -1.2331 38 1 8.1654 -2.5995 -3.3061 39 1 7.3259 -4.0357 -2.6737 40 1 6.5287 -2.9990 -3.8813 41 1 5.8428 -0.7337 -3.1167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545759.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:19 Heat of formation + Delta-G solvation = 7.870996 kcal Electronic energy + Delta-G solvation = -20925.381441 eV Core-core repulsion = 17841.311825 eV Total energy + Delta-G solvation = -3084.069617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.02607 -38.13787 -34.99021 -34.67485 -33.14509 -31.86651 -29.93171 -28.55570 -26.41422 -26.30977 -24.88736 -22.41518 -21.60250 -21.36802 -20.12329 -18.46068 -17.20382 -16.48628 -16.07141 -15.27690 -14.82286 -14.63345 -14.26078 -13.87356 -13.66361 -13.44060 -13.14518 -12.70501 -12.39855 -12.27381 -11.90259 -11.79297 -11.63023 -11.42701 -11.39356 -11.08880 -11.05738 -10.87565 -10.70571 -10.65814 -10.48572 -10.21016 -10.09707 -9.83939 -9.57064 -9.19734 -8.71804 -8.34456 -7.30141 -6.30387 -4.08124 2.89639 3.19814 3.24433 3.26753 3.66491 4.18250 4.22745 4.38974 4.59063 4.82880 4.90974 5.08450 5.33144 5.34249 5.36980 5.56390 5.57618 5.61094 5.65777 5.67633 5.75933 5.85340 5.91855 5.97506 6.19679 6.22083 6.26150 6.43328 6.49968 6.58721 6.62109 6.83573 7.01706 7.19879 7.22864 7.48607 7.52170 7.64106 8.23830 8.50735 8.91716 9.16588 10.29975 10.66926 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.027879 B = 0.004689 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.099529 B = 5969.923245 C = 6349.645980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.013 3.987 3 C -0.143 4.143 4 C -0.103 4.103 5 C 0.156 3.844 6 C -0.451 4.451 7 H 0.086 0.914 8 C 0.073 3.927 9 N -0.777 5.777 10 Si 0.901 3.099 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.265 1.265 14 N -0.231 5.231 15 N -0.139 5.139 16 N -0.377 5.377 17 C 0.139 3.861 18 C -0.130 4.130 19 C -0.147 4.147 20 C 0.101 3.899 21 H 0.098 0.902 22 C -0.185 4.185 23 O -0.561 6.561 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.270 0.730 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.459 -3.019 -15.496 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.008 4.008 3 C -0.201 4.201 4 C -0.235 4.235 5 C 0.025 3.975 6 C -0.487 4.487 7 H 0.104 0.896 8 C -0.145 4.145 9 N -0.404 5.404 10 Si 0.726 3.274 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.189 1.189 14 N -0.102 5.102 15 N -0.115 5.115 16 N -0.172 5.172 17 C 0.015 3.985 18 C -0.169 4.169 19 C -0.185 4.185 20 C 0.042 3.958 21 H 0.116 0.884 22 C -0.242 4.242 23 O -0.366 6.366 24 H 0.096 0.904 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 5.598 -3.963 -13.725 15.344 hybrid contribution -1.303 0.902 -0.939 1.843 sum 4.295 -3.061 -14.665 15.584 Atomic orbital electron populations 1.21849 0.95143 1.01216 1.01945 1.19030 0.95041 0.94665 0.92036 1.21856 1.00424 0.95965 1.01860 1.21430 1.08887 0.96063 0.97134 1.18919 0.97406 0.95694 0.85436 1.18607 1.29769 1.08387 0.91928 0.89610 1.25780 0.95550 0.96297 0.96920 1.70034 1.34504 1.33864 1.01997 0.86427 0.80795 0.81457 0.78680 1.19964 1.20617 1.18866 1.75074 1.08714 1.02492 1.23962 1.81488 1.24478 1.22822 0.82664 1.49495 1.38853 1.21879 1.06925 1.21346 0.94823 0.96004 0.86371 1.21917 0.96429 1.00918 0.97596 1.22253 0.97154 1.00484 0.98654 1.21932 0.95735 0.81736 0.96426 0.88416 1.22511 1.01690 1.00789 0.99233 1.86628 1.71090 1.27012 1.51880 0.90397 0.93852 0.93749 0.93137 0.93572 0.93847 0.90508 0.91936 0.90573 0.90144 0.91240 0.90706 0.91543 0.90849 0.91952 0.91582 0.92391 0.78098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.04 37.16 0.34 -2.17 16 2 C 0.01 0.25 3.03 -91.77 -0.28 -0.03 16 3 C -0.14 -2.53 9.04 37.16 0.34 -2.20 16 4 C -0.10 -2.40 5.80 -80.90 -0.47 -2.87 16 5 C 0.16 4.29 6.60 -85.01 -0.56 3.73 16 6 C -0.45 -12.12 7.67 -37.78 -0.29 -12.41 16 7 H 0.09 2.12 4.68 -52.49 -0.25 1.88 16 8 C 0.07 1.96 5.49 -17.35 -0.10 1.86 16 9 N -0.78 -22.32 11.95 55.54 0.66 -21.66 16 10 Si 0.90 19.71 29.56 -169.99 -5.03 14.68 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 14 N -0.23 -6.83 10.57 32.05 0.34 -6.49 16 15 N -0.14 -3.71 13.74 60.35 0.83 -2.88 16 16 N -0.38 -8.40 3.63 -56.17 -0.20 -8.60 16 17 C 0.14 2.23 6.17 -4.04 -0.02 2.20 16 18 C -0.13 -1.83 5.43 -26.73 -0.15 -1.98 16 19 C -0.15 -1.45 4.89 -26.73 -0.13 -1.58 16 20 C 0.10 0.98 3.59 -26.73 -0.10 0.89 16 21 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 22 C -0.18 -1.38 9.54 37.16 0.35 -1.03 16 23 O -0.56 -6.25 12.88 -35.23 -0.45 -6.71 16 24 H 0.08 1.52 5.83 -51.93 -0.30 1.22 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.82 6.88 -51.93 -0.36 0.47 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.52 5.66 -51.93 -0.29 1.22 16 31 H 0.27 7.15 8.30 -40.82 -0.34 6.81 16 32 H 0.08 1.07 7.16 -51.93 -0.37 0.70 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.18 7.82 -51.93 -0.41 0.77 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.37 2.77 9.05 45.56 0.41 3.18 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -33.08 333.01 -5.67 -38.75 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.77 Total: 3.48 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -1.06 Total: -15.59 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 1.63 Total: -39.63 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.45 Total: -6.71 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.08 -5.67 -38.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545759.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.621 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds