Wall clock time and date at job start Mon Mar 30 2020 04:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46615 * 2 1 4 4 C 1.50700 * 109.47261 * 119.99862 * 2 1 3 5 5 C 1.39017 * 126.76952 * 300.00148 * 4 2 1 6 6 C 1.41493 * 126.02305 * 0.02562 * 5 4 2 7 7 H 1.07996 * 120.00090 * 355.74350 * 6 5 4 8 8 C 1.39741 * 119.99970 * 175.75335 * 6 5 4 9 9 N 1.30985 * 119.99889 * 6.23726 * 8 6 5 10 10 Si 1.86806 * 119.99850 * 186.24579 * 8 6 5 11 11 H 1.48501 * 109.46922 * 94.97144 * 10 8 6 12 12 H 1.48496 * 109.46877 * 214.97149 * 10 8 6 13 13 H 1.48492 * 109.46971 * 334.97063 * 10 8 6 14 14 N 1.34845 * 107.95770 * 179.97438 * 5 4 2 15 15 N 1.28675 * 109.63204 * 359.71611 * 14 5 4 16 16 N 1.35012 * 126.77464 * 120.00280 * 4 2 1 17 17 C 1.46508 * 126.48978 * 0.02562 * 16 4 2 18 18 C 1.53000 * 109.47085 * 90.00035 * 17 16 4 19 19 C 1.52993 * 109.46903 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47304 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.46232 * 54.99947 * 20 19 18 22 22 C 1.53001 * 109.47273 * 174.99876 * 20 19 18 23 23 O 1.42900 * 109.47086 * 295.00623 * 20 19 18 24 24 H 1.09002 * 109.47357 * 299.99822 * 1 2 3 25 25 H 1.08992 * 109.47354 * 60.00394 * 1 2 3 26 26 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47077 * 240.00054 * 2 1 3 28 28 H 1.08995 * 109.46530 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47404 * 299.99960 * 3 2 1 30 30 H 1.09002 * 109.47113 * 60.00028 * 3 2 1 31 31 H 0.96999 * 119.99417 * 180.02562 * 9 8 6 32 32 H 1.09006 * 109.46916 * 329.99940 * 17 16 4 33 33 H 1.09001 * 109.47099 * 209.99921 * 17 16 4 34 34 H 1.08996 * 109.46883 * 59.99871 * 18 17 16 35 35 H 1.09001 * 109.47059 * 299.99911 * 18 17 16 36 36 H 1.09006 * 109.47442 * 60.00244 * 19 18 17 37 37 H 1.08997 * 109.47477 * 300.00296 * 19 18 17 38 38 H 1.09003 * 109.46754 * 180.02562 * 22 20 19 39 39 H 1.08994 * 109.47049 * 299.99895 * 22 20 19 40 40 H 1.09001 * 109.46979 * 60.00526 * 22 20 19 41 41 H 0.96700 * 113.99576 * 299.98950 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.7848 -0.3602 2.5528 6 6 1.0077 0.7378 2.9914 7 1 0.6007 1.4329 2.2720 8 6 0.7671 0.9231 4.3554 9 7 1.3593 0.1543 5.2352 10 14 -0.3994 2.2668 4.9240 11 1 -1.7547 1.6938 5.1239 12 1 0.0902 2.8382 6.2042 13 1 -0.4609 3.3365 3.8959 14 7 2.4149 -1.2521 3.3440 15 7 3.0223 -2.1222 2.6162 16 7 2.8117 -1.8123 1.2661 17 6 3.3329 -2.5485 0.1116 18 6 4.6921 -1.9718 -0.2897 19 6 5.2367 -2.7410 -1.4949 20 6 6.5956 -2.1640 -1.8966 21 1 7.2639 -2.1754 -1.0355 22 6 7.1971 -3.0104 -3.0203 23 8 6.4269 -0.8197 -2.3508 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6765 1.9564 0.8900 31 1 1.1919 0.2827 6.1820 32 1 2.6379 -2.4550 -0.7229 33 1 3.4474 -3.6005 0.3730 34 1 5.3870 -2.0653 0.5448 35 1 4.5776 -0.9198 -0.5511 36 1 4.5418 -2.6479 -2.3296 37 1 5.3512 -3.7929 -1.2331 38 1 8.1654 -2.5995 -3.3061 39 1 7.3259 -4.0357 -2.6737 40 1 6.5287 -2.9990 -3.8813 41 1 5.8428 -0.7337 -3.1167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545759.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:18 Heat of formation + Delta-G solvation = -16.327130 kcal Electronic energy + Delta-G solvation = -20926.430751 eV Core-core repulsion = 17841.311825 eV Total energy + Delta-G solvation = -3085.118926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.91069 -38.97856 -36.51663 -36.17177 -34.88726 -33.11884 -31.05997 -30.46097 -27.81294 -27.66937 -26.64030 -23.66143 -23.21759 -22.26102 -21.93382 -20.13936 -19.04861 -17.45022 -16.95840 -16.74529 -16.67918 -16.01090 -15.62410 -15.10297 -15.06324 -14.92537 -14.45368 -14.02564 -13.72766 -13.31768 -13.25232 -13.05844 -12.88434 -12.80366 -12.75517 -12.68853 -12.52094 -12.35002 -11.93904 -11.90903 -11.76260 -11.63523 -11.44410 -11.41817 -11.15552 -10.91108 -10.60556 -10.17015 -9.27676 -8.25420 -6.10877 1.05684 1.44918 1.45410 1.58816 2.04956 2.36018 2.39333 3.49331 3.59151 3.72479 3.80445 3.96234 4.08560 4.14860 4.19431 4.35261 4.38402 4.49155 4.53222 4.59212 4.73157 4.85149 4.91141 4.92559 4.98161 4.98517 5.05085 5.17272 5.24284 5.25709 5.28751 5.34095 5.36557 5.56046 5.58348 5.60244 5.83367 6.47547 6.52503 6.92986 6.97587 7.16372 8.35353 8.74891 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.027879 B = 0.004689 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.099529 B = 5969.923245 C = 6349.645980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.010 3.990 3 C -0.138 4.138 4 C -0.071 4.071 5 C 0.110 3.890 6 C -0.470 4.470 7 H 0.101 0.899 8 C 0.018 3.982 9 N -0.832 5.832 10 Si 0.978 3.022 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.247 1.247 14 N -0.289 5.289 15 N -0.185 5.185 16 N -0.362 5.362 17 C 0.124 3.876 18 C -0.118 4.118 19 C -0.135 4.135 20 C 0.099 3.901 21 H 0.078 0.922 22 C -0.177 4.177 23 O -0.584 6.584 24 H 0.051 0.949 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.036 0.964 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.269 0.731 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.039 0.961 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.572 -2.593 -19.451 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.011 4.011 3 C -0.196 4.196 4 C -0.207 4.207 5 C -0.023 4.023 6 C -0.507 4.507 7 H 0.119 0.881 8 C -0.195 4.195 9 N -0.461 5.461 10 Si 0.800 3.200 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.171 1.171 14 N -0.158 5.158 15 N -0.159 5.159 16 N -0.155 5.155 17 C 0.002 3.998 18 C -0.157 4.157 19 C -0.173 4.173 20 C 0.040 3.960 21 H 0.096 0.904 22 C -0.234 4.234 23 O -0.392 6.392 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.129 0.871 33 H 0.112 0.888 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 4.751 -3.595 -17.716 18.691 hybrid contribution -0.953 0.706 0.028 1.186 sum 3.798 -2.890 -17.688 18.321 Atomic orbital electron populations 1.21804 0.93830 1.01319 1.02744 1.19344 0.96026 0.95008 0.90722 1.21797 0.99840 0.95283 1.02643 1.22336 1.05647 0.94892 0.97798 1.19537 0.98859 0.96664 0.87232 1.19007 1.30140 1.08823 0.92700 0.88106 1.26765 0.97095 0.98719 0.96939 1.70217 1.37084 1.36627 1.02174 0.85252 0.78086 0.78463 0.78208 1.19509 1.20719 1.17054 1.75023 1.10709 1.04084 1.25944 1.81355 1.26435 1.23662 0.84441 1.50021 1.36784 1.21261 1.07435 1.21958 0.96469 0.96261 0.85087 1.21780 0.94663 1.00686 0.98536 1.22194 0.97499 1.00373 0.97211 1.21921 0.95483 0.81782 0.96833 0.90392 1.22420 1.01659 1.00582 0.98743 1.86594 1.71822 1.27847 1.52950 0.92963 0.89663 0.94046 0.89590 0.94471 0.89644 0.93086 0.92139 0.87058 0.88835 0.94221 0.92139 0.88833 0.89430 0.92313 0.90697 0.90722 0.76240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 9.04 71.98 0.65 -3.74 16 2 C 0.01 0.33 3.03 -11.54 -0.03 0.30 16 3 C -0.14 -4.47 9.04 71.98 0.65 -3.82 16 4 C -0.07 -3.25 5.80 42.26 0.24 -3.00 16 5 C 0.11 6.27 6.60 39.67 0.26 6.53 16 6 C -0.47 -25.94 7.67 23.44 0.18 -25.76 16 7 H 0.10 5.03 4.68 -2.91 -0.01 5.02 16 8 C 0.02 0.98 5.49 85.18 0.47 1.45 16 9 N -0.83 -50.46 11.95 21.80 0.26 -50.20 16 10 Si 0.98 41.50 29.56 68.60 2.03 43.52 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 12 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 13 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 14 N -0.29 -18.02 10.57 -52.51 -0.56 -18.57 16 15 N -0.18 -10.26 13.74 37.02 0.51 -9.75 16 16 N -0.36 -16.05 3.63 -331.61 -1.20 -17.25 16 17 C 0.12 3.68 6.17 86.38 0.53 4.22 16 18 C -0.12 -3.14 5.43 30.59 0.17 -2.97 16 19 C -0.13 -2.21 4.89 30.59 0.15 -2.06 16 20 C 0.10 1.72 3.59 30.60 0.11 1.83 16 21 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 22 C -0.18 -2.11 9.54 71.98 0.69 -1.42 16 23 O -0.58 -11.79 12.88 -148.98 -1.92 -13.71 16 24 H 0.05 1.94 5.83 -2.39 -0.01 1.92 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.09 2.34 6.88 -2.39 -0.02 2.32 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.05 1.93 5.66 -2.39 -0.01 1.92 16 31 H 0.27 15.12 8.30 -92.71 -0.77 14.35 16 32 H 0.11 2.59 7.16 -2.38 -0.02 2.58 16 33 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.04 1.28 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.79 7.82 -2.39 -0.02 1.77 16 36 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.39 4.56 9.05 -74.06 -0.67 3.89 16 Total: -1.00 -78.23 333.01 3.54 -74.69 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.35 Total: 19.73 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 4.07 Total: -28.46 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -0.99 Total: -95.78 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -1.92 Total: -13.71 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -78.23 3.54 -74.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545759.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.361 kcal (2) G-P(sol) polarization free energy of solvation -78.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds