Wall clock time and date at job start Mon Mar 30 2020 04:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.39011 * 126.76763 * 300.02550 * 4 2 1 6 6 C 1.41494 * 126.02411 * 359.97438 * 5 4 2 7 7 H 1.07998 * 119.99957 * 0.02562 * 6 5 4 8 8 C 1.39740 * 120.00041 * 179.97438 * 6 5 4 9 9 N 1.30980 * 120.00106 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99745 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47370 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46821 * 120.00590 * 10 8 6 13 13 H 1.48499 * 109.47498 * 240.00113 * 10 8 6 14 14 N 1.34840 * 107.95626 * 179.97438 * 5 4 2 15 15 N 1.28666 * 109.63833 * 359.97438 * 14 5 4 16 16 N 1.35021 * 126.77444 * 119.70681 * 4 2 1 17 17 C 1.46502 * 126.49134 * 359.97438 * 16 4 2 18 18 C 1.52996 * 109.47272 * 89.99520 * 17 16 4 19 19 H 1.08996 * 109.47305 * 304.99813 * 18 17 16 20 20 C 1.52999 * 109.46881 * 65.00023 * 18 17 16 21 21 C 1.53001 * 109.47124 * 184.99986 * 18 17 16 22 22 C 1.52997 * 109.47329 * 175.00360 * 21 18 17 23 23 O 1.42901 * 109.46999 * 180.02562 * 22 21 18 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 0.96996 * 120.00321 * 179.97438 * 9 8 6 32 32 H 1.08995 * 109.46873 * 209.99981 * 17 16 4 33 33 H 1.09005 * 109.46881 * 329.99434 * 17 16 4 34 34 H 1.08999 * 109.47054 * 299.99694 * 20 18 17 35 35 H 1.09002 * 109.47210 * 60.00224 * 20 18 17 36 36 H 1.08997 * 109.46984 * 179.97438 * 20 18 17 37 37 H 1.09003 * 109.46631 * 295.00340 * 21 18 17 38 38 H 1.09002 * 109.47304 * 54.99920 * 21 18 17 39 39 H 1.08999 * 109.46546 * 300.00166 * 22 21 18 40 40 H 1.08997 * 109.46859 * 59.99691 * 22 21 18 41 41 H 0.96704 * 113.99577 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.7844 -0.3607 2.5528 6 6 1.0076 0.7376 2.9914 7 1 0.5438 1.3934 2.2696 8 6 0.8398 0.9730 4.3586 9 7 1.4020 0.1773 5.2340 10 14 -0.1863 2.4226 4.9376 11 1 -0.7085 3.1613 3.7599 12 1 -1.3230 1.9290 5.7558 13 1 0.6565 3.3297 5.7575 14 7 2.4145 -1.2525 3.3439 15 7 3.0269 -2.1191 2.6162 16 7 2.8071 -1.8157 1.2660 17 6 3.3216 -2.5566 0.1115 18 6 4.6818 -1.9865 -0.2954 19 1 4.5884 -0.9152 -0.4730 20 6 5.6934 -2.2313 0.8261 21 6 5.1617 -2.6756 -1.5744 22 6 6.4599 -2.0207 -2.0503 23 8 6.9077 -2.6640 -3.2452 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.2858 0.3409 6.1830 32 1 3.4324 -3.6084 0.3749 33 1 2.6242 -2.4620 -0.7210 34 1 5.3515 -1.7404 1.7373 35 1 5.7868 -3.3027 1.0037 36 1 6.6626 -1.8256 0.5361 37 1 5.3401 -3.7319 -1.3729 38 1 4.4001 -2.5769 -2.3479 39 1 6.2813 -0.9645 -2.2516 40 1 7.2214 -2.1195 -1.2767 41 1 7.7280 -2.2991 -3.6046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545879.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:01 Heat of formation + Delta-G solvation = 12.066595 kcal Electronic energy + Delta-G solvation = -21188.664886 eV Core-core repulsion = 18104.777205 eV Total energy + Delta-G solvation = -3083.887682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.10420 -37.71767 -35.84367 -34.82096 -33.33266 -31.70132 -28.62081 -28.45505 -26.60683 -26.43886 -25.07509 -23.16283 -21.64325 -20.34727 -20.03239 -18.41435 -17.50003 -17.19813 -15.65098 -15.29639 -14.86271 -14.76840 -14.28890 -13.74234 -13.63592 -13.44168 -13.01527 -12.65097 -12.36690 -12.19601 -11.97325 -11.66327 -11.45052 -11.43984 -11.16910 -11.12356 -10.91144 -10.80238 -10.74397 -10.61686 -10.51210 -10.16300 -10.04692 -9.87156 -9.56719 -9.23974 -8.73938 -8.36040 -7.31815 -6.32051 -4.10368 2.86768 3.17176 3.22885 3.25784 3.60018 4.12952 4.17591 4.37021 4.80094 4.85674 5.10829 5.17360 5.35477 5.44925 5.55127 5.55784 5.58098 5.64554 5.65991 5.86598 5.93160 5.95513 6.02177 6.09705 6.19672 6.24028 6.39133 6.46077 6.56550 6.59298 6.60580 6.81293 6.98737 7.17706 7.20899 7.42968 7.46752 7.61995 8.21688 8.48762 8.89403 9.14664 10.28471 10.64918 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.027295 B = 0.005074 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.590468 B = 5517.131112 C = 5988.334215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.012 3.988 3 C -0.143 4.143 4 C -0.105 4.105 5 C 0.157 3.843 6 C -0.450 4.450 7 H 0.086 0.914 8 C 0.073 3.927 9 N -0.778 5.778 10 Si 0.900 3.100 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.278 1.278 14 N -0.231 5.231 15 N -0.134 5.134 16 N -0.374 5.374 17 C 0.144 3.856 18 C -0.102 4.102 19 H 0.076 0.924 20 C -0.146 4.146 21 C -0.111 4.111 22 C 0.075 3.925 23 O -0.578 6.578 24 H 0.042 0.958 25 H 0.077 0.923 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.270 0.730 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.049 0.951 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.533 -0.710 -13.074 14.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.009 4.009 3 C -0.200 4.200 4 C -0.237 4.237 5 C 0.026 3.974 6 C -0.486 4.486 7 H 0.104 0.896 8 C -0.146 4.146 9 N -0.404 5.404 10 Si 0.726 3.274 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.203 1.203 14 N -0.103 5.103 15 N -0.110 5.110 16 N -0.169 5.169 17 C 0.019 3.981 18 C -0.122 4.122 19 H 0.095 0.905 20 C -0.203 4.203 21 C -0.149 4.149 22 C -0.003 4.003 23 O -0.383 6.383 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.713 -2.124 -11.697 13.190 hybrid contribution -0.346 1.604 -0.537 1.726 sum 5.367 -0.521 -12.234 13.370 Atomic orbital electron populations 1.21857 0.95125 1.01261 1.01924 1.19036 0.95096 0.94635 0.92120 1.21841 1.00219 0.96061 1.01915 1.21414 1.09157 0.96027 0.97095 1.18905 0.97551 0.95506 0.85416 1.18637 1.28968 1.09339 0.91638 0.89628 1.25774 0.95163 0.96629 0.96998 1.70026 1.34876 1.33481 1.02041 0.86395 0.79966 0.81748 0.79308 1.18758 1.20339 1.20348 1.75084 1.08798 1.02424 1.23949 1.81490 1.24024 1.22867 0.82598 1.49449 1.38877 1.21710 1.06870 1.21364 0.94114 0.96088 0.86516 1.21452 0.95412 1.00810 0.94561 0.90546 1.21851 0.97508 1.01944 0.99024 1.21477 0.96226 1.00553 0.96674 1.22258 0.96393 0.95502 0.86120 1.86463 1.45839 1.62939 1.43049 0.93853 0.90432 0.93693 0.93085 0.90447 0.93759 0.93861 0.91977 0.89823 0.90298 0.91156 0.92630 0.93261 0.90987 0.91156 0.93666 0.93248 0.77620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.04 37.16 0.34 -2.16 16 2 C 0.01 0.22 3.03 -91.77 -0.28 -0.06 16 3 C -0.14 -2.45 9.04 37.15 0.34 -2.11 16 4 C -0.11 -2.38 5.80 -80.90 -0.47 -2.85 16 5 C 0.16 4.20 6.60 -85.02 -0.56 3.64 16 6 C -0.45 -11.87 7.69 -37.78 -0.29 -12.16 16 7 H 0.09 2.09 4.66 -52.49 -0.24 1.84 16 8 C 0.07 1.92 5.49 -17.35 -0.10 1.82 16 9 N -0.78 -22.00 11.92 55.54 0.66 -21.33 16 10 Si 0.90 19.47 29.56 -169.99 -5.02 14.44 16 11 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 N -0.23 -6.65 10.55 32.05 0.34 -6.31 16 15 N -0.13 -3.45 12.83 60.35 0.77 -2.67 16 16 N -0.37 -8.05 3.23 -56.17 -0.18 -8.23 16 17 C 0.14 2.29 5.56 -4.04 -0.02 2.27 16 18 C -0.10 -1.41 2.59 -90.62 -0.24 -1.65 16 19 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 20 C -0.15 -2.16 8.81 37.16 0.33 -1.83 16 21 C -0.11 -1.27 5.05 -26.73 -0.14 -1.40 16 22 C 0.07 0.77 6.80 37.16 0.25 1.03 16 23 O -0.58 -5.96 13.66 -35.23 -0.48 -6.44 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 1.50 5.74 -51.93 -0.30 1.20 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.82 6.88 -51.93 -0.36 0.47 16 28 H 0.08 1.49 5.74 -51.93 -0.30 1.19 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.27 7.03 8.30 -40.82 -0.34 6.69 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.12 7.16 -51.93 -0.37 0.75 16 34 H 0.07 1.32 6.96 -51.93 -0.36 0.96 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.62 6.56 -51.93 -0.34 0.28 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 41 H 0.38 2.12 9.12 45.56 0.42 2.53 16 LS Contribution 327.69 15.07 4.94 4.94 Total: -1.00 -32.11 327.69 -5.37 -37.48 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.56 Total: 3.57 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -0.83 Total: -15.45 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 1.59 Total: -38.54 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.48 Total: -6.44 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.11 -5.37 -37.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545879.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.549 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds